BAC Information

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BAC

Clone NameB6Ng01-102G18
Chromosome6 (Build37)Y (Build37)
Map Location 18,835,427 - 18,835,9681,342,771 - 1,342,828
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSt7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7
Downstream geneLOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-102G18.bB6Ng01-102G18.g
ACCDH911321DH911322
length953955
definitionDH911321|Mus musculus domesticus DNA, BAC clone: B6Ng01-102G18, 5' end.DH911322|Mus musculus domesticus DNA, BAC clone: B6Ng01-102G18, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,835,427 - 18,835,968)(1,342,771 - 1,342,828)
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtttctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaaga
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctactggtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtcaggcatggtgattccaccagaggttcttt
tacccttgagaagactttttgctatcctaggttttttgttattccagatg
aatttgcaaattgctccttctaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttaatttctttcttcagagatttgaagtttttatcata
tagatctttcacttcctagttagagtcacgccagatatttatatatttgt
gac
gaattcatactatatttgtctttctggttctgagttactttattcaagat
tatctttcctccttttcattcactttcctatgtatttcatgatttcactt
ttttaaaagctgaatatgcagggtggtggtggtgcacgcctttgatccca
gcacttggaaggcagagacaggcagatttttgagttcgagaccagcctgg
tctacaaagtgagttccaggatagccagggctatacagagaaatcctgtc
tcaaaaacaaaaacaaaaacaaaaacaaaacaacaacaaaaaacaaaaac
aaaaaagcaaaacaaacaaacaaacaaacaaagctgaatacttctccatt
gtgtaaatatgtcccattttctttaactatctaggttgtttccagtttct
ggctattatgaataaggcagcaatgcatgtcattaagcaagtgtctctgt
ggtaggatagagtatcctctgcatatatgcccaggagtggtatagctgaa
tcttgaagcagatcaactcccaatcttctgaggaagagttacattgatgt
aactcaatgatggctacacaagcttacatccccaccagcaaatggaggaa
tattcccttagctccacatcatcgccggcatgagttgtcacttgtagtat
tgctcgtagcatatctgacaatgtaagaatctcagagttgtttttatttg
catttttctgatggttaaggacattgaacatttctttgtgcgtgccaccc
atttgagagtcttctattgaaaatcctctgtttagatttgtaacccattt
ttattgatttgtttgggtttttatatatcttgttttcttgagttcttaat
atatttttgggatattaggcctccataagaagtggagataggaaaaaaaa
ttcctgttctcagtgaaattgataagtgtttcttttgcctttcagaagct
tttca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_18835427_18835968
seq2: B6Ng01-102G18.b_47_589 (reverse)

seq1  AATAGAATTGAAGACCCAGAGATGAACCCACACACCTATGGTCACTTGAT  50
      |||||||||||||||||||| |||||||||||||||||||||| ||||||
seq2  AATAGAATTGAAGACCCAGAAATGAACCCACACACCTATGGTCTCTTGAT  50

seq1  CTTCGACAAGGGAGCTAAAACCATCCAGTGGAAGAAAGACAGCATTTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCGACAAGGGAGCTAAAACCATCCAGTGGAAGAAAGACAGCATTTTCA  100

seq1  ACAATTGGTGCTGGCACAACTGGTTGTTATCTTGTAGAAGAATGTGAATC  150
      ||||||||||||||||||||||||||||||| |||||||||||| |||||
seq2  ACAATTGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGAATGCGAATC  150

seq1  GATCCATACTTATCTCCATGTACTAAGGTCAAATCTAAGTGGATCAAGGA  200
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GATCCATACTTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGA  200

seq1  ACTTCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGA  250
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ACTTCACATAAAACCAGAAACACTGAAACTTATAGAGGAGAAAGTGGGGA  250

seq1  AAAGCCTTGAAGATATGGGCAGAGGGGAAAAGTTCCTGAACAGAACAGCA  300
      ||||||||||||||||||||| ||||||||| ||||||||||||||||||
seq2  AAAGCCTTGAAGATATGGGCACAGGGGAAAAATTCCTGAACAGAACAGCA  300

seq1  ATGGC-TGTGCTGTGAGGTAGAGAATCGACAAATGGGACCTAATGAAACT  349
      ||||| |||||||| || | |||||| |||||||||||||||||||||||
seq2  ATGGCTTGTGCTGTAAGATCGAGAATTGACAAATGGGACCTAATGAAACT  350

seq1  CCAAAGTTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAGACCAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGTTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAGACCAC  400

seq1  CAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTA  450

seq1  ATATCCAACATATATAAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCAACATATATAAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAA  500

seq1  TAACCCCATTAATAAATGGGGCTCAGAACTGAACAAAGAATTC  542
      |||||||||||| ||||||||||||||||||||||||||||||
seq2  TAACCCCATTAAAAAATGGGGCTCAGAACTGAACAAAGAATTC  543

seq1: chrY_1342771_1342828
seq2: B6Ng01-102G18.g_332_399

seq1  ------AAAACAAAGCAAAATAAAACAACAACAACAACAAAACAAAACAA  44
            |||||||| ||| |  ||| ||||| ||||| ||| ||||||||
seq2  AAAACAAAAACAAAACAACAACAAAAAACAAAAACAAAAAAGCAAAACAA  50

seq1  TCAAACAAACAAAG----  58
       ||||||||||||     
seq2  ACAAACAAACAAACAAAG  68