BAC Information

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BAC

Clone NameB6Ng01-102J20
Chromosome6 (Build37)
Map Location 50,819,932 - 50,967,168
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041653, LOC624524, Mpp6, Dfna5h, LOC100041681, Osbpl3, Cycs, 4921507P07Rik, LOC213320, EG666302, EG666308, EG666310, Npvf, LOC100040877
Downstream geneEG625167, Nfe2l3, Hnrpa2b1, Cbx3, Snx10, LOC100041820, Skap2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-102J20.bB6Ng01-102J20.g
ACCDH911452DH911453
length1,136400
definitionDH911452|Mus musculus domesticus DNA, BAC clone: B6Ng01-102J20, 5' end.DH911453|Mus musculus domesticus DNA, BAC clone: B6Ng01-102J20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,966,027 - 50,967,168)(50,819,932 - 50,820,337)
sequence
gaattctttggagcacctagcatgtctttattcaaatgaattgatttgaa
caaatttctgttaatgagaaagaagcaactgtacttaaagtggaactaat
ctcacagtttcaaacactcagacaattaagtcactaaacccattgggcat
cccctggtcatacttccctgactaatcctgctgtcccaggcagagctggg
caaggccagagaacagtgtgtgctgtgttcgccctgtcacttagcattag
agtcaaagaggccaagtgtaaaagggagctgcttgccagtgctcaggaca
gaagtgaggggacaggcacttgctctgaactgtgagtctggggagcccct
gaaaagttatgagaagtgaatgggctgtctgtgcatggctgaggaaatgt
ctttctcagatgttttcagccagtgacttgattgagagatgaccagggga
ggagaaaggattacgccaatgagcttggagtcttataaatcagcagtgta
gacgagctcaagaggaactgtcaaactctgcaaaaacatgctgttgtgca
agcttccgtgtcctctaagaaacaaagcctagccttgccttgctctctag
atgagagaaggcttagctgaagctcacagagaactgagcaccggaagaaa
actatggccagctaagaaatggaaaagaatagattcaaagtaacacacac
acacacacacacacacacacacacacacacacacacgcacacaccacttc
tcagttgtgatcttggtgcaagcatcaaactacaaatagggtcaagaaac
agagtcaaaaaaatgtcatgagtaaagcctgactagaaatccagtaacat
acttgactctcataagcctgctctcaaccaatgtcttgatttctatctga
tgactgaggaaaccgaagagcagagatgggtaggagtgaacctgtgaagt
atggtacaaaaaatctatatcacatggttccccattgatctcccttttag
taatgacctgcataactagcggcagggatttgtgtgatattgacatttca
cattccaagagtcattctgtgccttgatgcatctgtcttctgcttgtgcc
atggcattggatcatcccataaatcaacggtgtctg
ttagggaaaccatcagtgacaaagtgaactttgttggtactatgggtcag
aatgagaatctcacagacacatctatgaactagagaaaaggtttcaagtg
aaccagagaggctctgaggtcataaaagactaactttagatgaggcttca
tgacattttctgtttggggaaactttaacatctccatgcctcatcttcta
ttgctgatgactgaatacaaagagaaagttccatatgctttttgaagatg
aatggaaaaaaaaaaacaaaaacaaatgaactcaagcacagcacacacct
gatgaatgtcttcaaaggtagcagcataaaaggtgttagggctcaactga
gaattagaacaaattgtaagtataatacctgcagaaggtgtgtgtgtggg

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_50966027_50967168
seq2: B6Ng01-102J20.b_45_1180 (reverse)

seq1  CAGACACCGTTGA-TTATGGGATGATCCAATGCCATGGGCACAAAGCAGA  49
      ||||||||||||| |||||||||||||||||||||| ||||| |||||||
seq2  CAGACACCGTTGATTTATGGGATGATCCAATGCCAT-GGCAC-AAGCAGA  48

seq1  AGACAGATGCATTCAAGGCACAGAATGACTCTTGGAATGTGAAATGTCAA  99
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AGACAGATGCA-TCAAGGCACAGAATGACTCTTGGAATGTGAAATGTCAA  97

seq1  TATCACACAAATCCCTGCCGCCTAG-TATGCAGGTCATTAACTAAAAAGG  148
      |||||||||||||||||||| |||| ||||||||||||| ||| ||||||
seq2  TATCACACAAATCCCTGCCG-CTAGTTATGCAGGTCATT-ACT-AAAAGG  144

seq1  GAGATCAATGGGGAACCATGTGAATATAGATTTTTTGTACCATACTTCAC  198
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GAGATCAATGGGGAACCATGTG-ATATAGATTTTTTGTACCATACTTCAC  193

seq1  AGGTTCACCTCCTACCCATCTCTGCTCTTCGGTTTCCTCAGTCATCAGAT  248
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCA-CTCCTACCCATCTCTGCTCTTCGGTTTCCTCAGTCATCAGAT  242

seq1  AGAAATCAAGACATTGGTTGAGAGCAGGCTTATGAGAGTCAAGTATGTTA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATCAAGACATTGGTTGAGAGCAGGCTTATGAGAGTCAAGTATGTTA  292

seq1  CTGGATTTCTAGTCAGGCTTTACTCATGACATTTTTTTGACTCTGTTTCT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATTTCTAGTCAGGCTTTACTCATGACATTTTTTTGACTCTGTTTCT  342

seq1  TGACCCTATTTGTAGTTTGATGCTTGCACCAAGATCACAACTGAGAAGTG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCCTATTTGTAGTTTGATGCTTGCACCAAGATCACAACTGAGAAGTG  392

seq1  GTGTGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  442

seq1  GTTACTTTGAATCTATTCTTTTCCATTTCTTAGCTGGCCATAGTTTTCTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTTTGAATCTATTCTTTTCCATTTCTTAGCTGGCCATAGTTTTCTT  492

seq1  CCGGTGCTCAGTTCTCTGTGAGCTTCAGCTAAGCCTTCTCTCATCTAGAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGTGCTCAGTTCTCTGTGAGCTTCAGCTAAGCCTTCTCTCATCTAGAG  542

seq1  AGCAAGGCAAGGCTAGGCTTTGTTTCTTAGAGGACACGGAAGCTTGCACA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGGCAAGGCTAGGCTTTGTTTCTTAGAGGACACGGAAGCTTGCACA  592

seq1  ACAGCATGTTTTTGCAGAGTTTGACAGTTCCTCTTGAGCTCGTCTACACT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCATGTTTTTGCAGAGTTTGACAGTTCCTCTTGAGCTCGTCTACACT  642

seq1  GCTGATTTATAAGACTCCAAGCTCATTGGCGTAATCCTTTCTCCTCCCCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATTTATAAGACTCCAAGCTCATTGGCGTAATCCTTTCTCCTCCCCT  692

seq1  GGTCATCTCTCAATCAAGTCACTGGCTGAAAACATCTGAGAAAGACATTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATCTCTCAATCAAGTCACTGGCTGAAAACATCTGAGAAAGACATTT  742

seq1  CCTCAGCCATGCACAGACAGCCCATTCACTTCTCATAACTTTTCAGGGGC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGCCATGCACAGACAGCCCATTCACTTCTCATAACTTTTCAGGGGC  792

seq1  TCCCCAGACTCACAGTTCAGAGCAAGTGCCTGTCCCCTCACTTCTGTCCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAGACTCACAGTTCAGAGCAAGTGCCTGTCCCCTCACTTCTGTCCT  842

seq1  GAGCACTGGCAAGCAGCTCCCTTTTACACTTGGCCTCTTTGACTCTAATG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACTGGCAAGCAGCTCCCTTTTACACTTGGCCTCTTTGACTCTAATG  892

seq1  CTAAGTGACAGGGCGAACACAGCACACACTGTTCTCTGGCCTTGCCCAGC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTGACAGGGCGAACACAGCACACACTGTTCTCTGGCCTTGCCCAGC  942

seq1  TCTGCCTGGGACAGCAGGATTAGTCAGGGAAGTATGACCAGGGGATGCCC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTGGGACAGCAGGATTAGTCAGGGAAGTATGACCAGGGGATGCCC  992

seq1  AATGGGTTTAGTGACTTAATTGTCTGAGTGTTTGAAACTGTGAGATTAGT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGTTTAGTGACTTAATTGTCTGAGTGTTTGAAACTGTGAGATTAGT  1042

seq1  TCCACTTTAAGTACAGTTGCTTCTTTCTCATTAACAGAAATTTGTTCAAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTTTAAGTACAGTTGCTTCTTTCTCATTAACAGAAATTTGTTCAAA  1092

seq1  TCAATTCATTTGAATAAAGACATGCTAGGTGCTCCAAAGAATTC  1142
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTCATTTGAATAAAGACATGCTAGGTGCTCCAAAGAATTC  1136

seq1: chr6_50819932_50820337
seq2: B6Ng01-102J20.g_66_471

seq1  GAATTCTTAGGGAAACCATCAGTGACAAAGTGAACTTTGTTGGTACTATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGGGAAACCATCAGTGACAAAGTGAACTTTGTTGGTACTATG  50

seq1  GGTCAGAATGAGAATCTCACAGACACATCTATGAACTAGAGAAAAGGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGAATGAGAATCTCACAGACACATCTATGAACTAGAGAAAAGGTTT  100

seq1  CAAGTGAACCAGAGAGGCTCTGAGGTCATAAAAGACTAACTTTAGATGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGAACCAGAGAGGCTCTGAGGTCATAAAAGACTAACTTTAGATGAG  150

seq1  GCTTCATGACATTTTCTGTTTGGGGAAACTTTAACATCTCCATGCCTCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCATGACATTTTCTGTTTGGGGAAACTTTAACATCTCCATGCCTCAT  200

seq1  CTTCTATTGCTGATGACTGAATACAAAGAGAAAGTTCCATATGCTTTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTATTGCTGATGACTGAATACAAAGAGAAAGTTCCATATGCTTTTTG  250

seq1  AAGATGAATGGAAAAAAAAAAACAAAAACAAATGAACTCAAGCACAGCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGAATGGAAAAAAAAAAACAAAAACAAATGAACTCAAGCACAGCAC  300

seq1  ACACCTGATGAATGTCTTCAAAGGTAGCAGCATAAAAGGTGTTAGGGCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTGATGAATGTCTTCAAAGGTAGCAGCATAAAAGGTGTTAGGGCTC  350

seq1  AACTGAGAATTAGAACAAATTGTAAGTATAATACCTGCAGAAGGTGTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAGAATTAGAACAAATTGTAAGTATAATACCTGCAGAAGGTGTGTG  400

seq1  TGTGTG  406
      |||| |
seq2  TGTGGG  406