BAC Information

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BAC

Clone NameB6Ng01-103I16
Chromosome6 (Build37)
Map Location 98,270,645 - 98,419,257
singlet/doubletdoublet
Overlap geneGm765
Upstream geneFrmd4b, LOC641241, LOC100043692, Mitf, LOC666019
Downstream geneLOC665963, LOC665979, Foxp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-103I16.bB6Ng01-103I16.g
ACCDH912097DH912098
length1,20289
definitionDH912097|Mus musculus domesticus DNA, BAC clone: B6Ng01-103I16, 5' end.DH912098|Mus musculus domesticus DNA, BAC clone: B6Ng01-103I16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,418,016 - 98,419,257)(98,270,645 - 98,270,729)
sequence
gaattcttaaaatatttctggaaagcccaaatttcataaagcatgttgtg
ttttaaatgtattagaggaactcaatattgaatgaaaaacttgtgaaata
cttagtaaagtgaagatgctataaatatttaaacatatcagttttgtcaa
tacatatctctatagctcttctattatcatcaacaaatctgttcgaagcg
cctctcagttaatgaagtactgttgttgggactatagaaaaacaatttta
gatttgttttctgatttgaaggtttataggatacatacagtctgtaggat
ctttggtgaagcaacttaatatctctgaatctttgctaccctttctgtga
catataccaacccctcttttttattttttccttgttgtaatatattcctc
actgatagtttaaatatgcttttggaaatttgatttctagccttcattct
gttctactgataagaatgggtcatctgtggagctcctccaatgttttttg
tgaatgacattgcccatgtaactataataatattaggaaacactgagact
atcatatatgtaagaagtcagataggaataacaagtagggagttcacatc
tatggaacttgtagagtggtagatattgtctatggaatgtggcggtagat
attgtcctctcaaagacacaggtgggttctagaatatcatggagccacac
acctaatggctgactagcatccatatgcacaagtcaaattctaaccacaa
cttacattctcagagagcttggctgcaaggagatactggactgagtagaa
tgttttacctggctgacaagtttcatagtataattcaagaagttggcatt
ctggaaagcagtctttgggtcatggttaatatgagctttttttttttttc
tttgtaaggggtcctcaatattagggcatagagttgagtttgtgcttctc
aggaaatagcctgatcctattcactcatcagagaacccacattgtggctt
agcaagtacccagcatcatttcttcaaacatctactacattcaaatgtat
agttttgtatctacaatatgactacagtaccccccaagctcatttctctg
ctgctatgtgcaaaagatgctagtcagcatcattggaacgagtcctttgt
ctgcacttattgtcccattcgccaaacagccaaaagagagtgggtggata
gg
atcctgtagaagtctcgtgaaaacatctggcagctgctgggtgacttggg
ttgttctatgtgggttgttggtggtggtggtggtggtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_98418016_98419257
seq2: B6Ng01-103I16.b_49_1250 (reverse)

seq1  CCTATCCACCCACTCTCCTTCTTGGCCCTGGTGTTTGCCCTGTACTGGGG  50
      |||||||||||||||||  | |||||     |||||| |    | |||| 
seq2  CCTATCCACCCACTCTC--TTTTGGC-----TGTTTGGC---GAATGGGA  40

seq1  CATATAAAGTTTGCAAGACCAAGGGGCCTCTGTTCCCAATGATGGCTGAC  100
      || ||||    ||| |||| ||  || ||| ||| |||||||| ||||||
seq2  CA-ATAA---GTGC-AGACAAA--GGACTC-GTT-CCAATGAT-GCTGAC  80

seq1  TAGGCCATCTTCTGCTACATATGCAGCAAGAGATATGAGCTCTGGGGGGT  150
      |||  |||||| ||| ||||| ||||| ||||| ||||||| ||||||||
seq2  TAG--CATCTTTTGC-ACATA-GCAGC-AGAGAAATGAGCT-TGGGGGGT  124

seq1  ACTGTTAGTTCATATTGTTAAGATTACAAAACTTAATACATTTGAAATGT  200
      |||| ||| |||||||||  ||| |||||||||  ||||||||| |||||
seq2  ACTG-TAG-TCATATTGT--AGA-TACAAAACT--ATACATTTG-AATGT  166

seq1  AGTAGATGTTTGAAAGAAAATGATGCTGGGTACTTGCTAAGCCACAATGT  250
      ||||||||||||||   |||||||||||||||||||||||||||||||||
seq2  AGTAGATGTTTGAA--GAAATGATGCTGGGTACTTGCTAAGCCACAATGT  214

seq1  GGGTTCTCCTGATGAGTTGAATAGGATCAGGCTATTTCCCTGAGAAATCA  300
      ||||||| |||||||| |||||||||||||||||||| |||||| || ||
seq2  GGGTTCT-CTGATGAG-TGAATAGGATCAGGCTATTT-CCTGAG-AAGCA  260

seq1  CAAACTCAACTCTATGCCCTAATATTGAGGACCCCTTACAAAG-AAAAAA  349
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CAAACTCAACTCTATGCCCTAATATTGAGGACCCCTTACAAAGAAAAAAA  310

seq1  AAAAAAGCTCATATTAACCATGACCCAAAGACCTGCTTTCCAGAATGCCA  399
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AAAAAAGCTCATATTAACCATGACCCAAAGA-CTGCTTTCCAGAATGCCA  359

seq1  ACTTCTTGAATTATACTATGAAACTTGTCAGCCAGGTAAAACATTCTACT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTTGAATTATACTATGAAACTTGTCAGCCAGGTAAAACATTCTACT  409

seq1  CAGTCCAGTATCTCCTTGCAGCCAAGCTCTCTGAGAATGTAAGTTGTGGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCAGTATCTCCTTGCAGCCAAGCTCTCTGAGAATGTAAGTTGTGGT  459

seq1  TAGAATTTGACTTGTGCATATGGATGCTAGTCAGCCATTAGGTGTGTGGC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATTTGACTTGTGCATATGGATGCTAGTCAGCCATTAGGTGTGTGGC  509

seq1  TCCATGATATTCTAGAACCCACCTGTGTCTTTGAGAGGACAATATCTACC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGATATTCTAGAACCCACCTGTGTCTTTGAGAGGACAATATCTACC  559

seq1  GCCACATTCCATAGACAATATCTACCACTCTACAAGTTCCATAGATGTGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACATTCCATAGACAATATCTACCACTCTACAAGTTCCATAGATGTGA  609

seq1  ACTCCCTACTTGTTATTCCTATCTGACTTCTTACATATATGATAGTCTCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCTACTTGTTATTCCTATCTGACTTCTTACATATATGATAGTCTCA  659

seq1  GTGTTTCCTAATATTATTATAGTTACATGGGCAATGTCATTCACAAAAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTCCTAATATTATTATAGTTACATGGGCAATGTCATTCACAAAAAA  709

seq1  CATTGGAGGAGCTCCACAGATGACCCATTCTTATCAGTAGAACAGAATGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGAGGAGCTCCACAGATGACCCATTCTTATCAGTAGAACAGAATGA  759

seq1  AGGCTAGAAATCAAATTTCCAAAAGCATATTTAAACTATCAGTGAGGAAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTAGAAATCAAATTTCCAAAAGCATATTTAAACTATCAGTGAGGAAT  809

seq1  ATATTACAACAAGGAAAAAATAAAAAAGAGGGGTTGGTATATGTCACAGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTACAACAAGGAAAAAATAAAAAAGAGGGGTTGGTATATGTCACAGA  859

seq1  AAGGGTAGCAAAGATTCAGAGATATTAAGTTGCTTCACCAAAGATCCTAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTAGCAAAGATTCAGAGATATTAAGTTGCTTCACCAAAGATCCTAC  909

seq1  AGACTGTATGTATCCTATAAACCTTCAAATCAGAAAACAAATCTAAAATT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGTATGTATCCTATAAACCTTCAAATCAGAAAACAAATCTAAAATT  959

seq1  GTTTTTCTATAGTCCCAACAACAGTACTTCATTAACTGAGAGGCGCTTCG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTCTATAGTCCCAACAACAGTACTTCATTAACTGAGAGGCGCTTCG  1009

seq1  AACAGATTTGTTGATGATAATAGAAGAGCTATAGAGATATGTATTGACAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGATTTGTTGATGATAATAGAAGAGCTATAGAGATATGTATTGACAA  1059

seq1  AACTGATATGTTTAAATATTTATAGCATCTTCACTTTACTAAGTATTTCA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGATATGTTTAAATATTTATAGCATCTTCACTTTACTAAGTATTTCA  1109

seq1  CAAGTTTTTCATTCAATATTGAGTTCCTCTAATACATTTAAAACACAACA  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTTTTCATTCAATATTGAGTTCCTCTAATACATTTAAAACACAACA  1159

seq1  TGCTTTATGAAATTTGGGCTTTCCAGAAATATTTTAAGAATTC  1242
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTATGAAATTTGGGCTTTCCAGAAATATTTTAAGAATTC  1202

seq1: chr6_98270645_98270729
seq2: B6Ng01-103I16.g_78_162

seq1  TGTAGAAGTCTCGTGAAAACATCTGGCAGCTGCTGGGTGACTTGGGTTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAAGTCTCGTGAAAACATCTGGCAGCTGCTGGGTGACTTGGGTTGT  50

seq1  TCTATGTGGGTTGTTGGTGGTGGTGGTGGTGGTGG  85
      |||||||||||||||||||||||||||||||||||
seq2  TCTATGTGGGTTGTTGGTGGTGGTGGTGGTGGTGG  85