BAC Information

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BAC

Clone NameB6Ng01-103M16
Chromosome6 (Build37)
Map Location 53,927,782 - 54,048,586
singlet/doubletdoublet
Overlap geneCpvl
Upstream geneJazf1, LOC666259, LOC666516, D430007I03, Creb5, LOC384386, 1200009O22Rik
Downstream geneLOC666305, Chn2, LOC100042056, Prr15, EG640926, Wipf3, Scrn1, Fkbp14, Plekha8, LOC100041292, 2410066E13Rik, Znrf2, Nod1, A030007L17Rik, Gars, Crhr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-103M16.bB6Ng01-103M16.g
ACCDH912274DH912275
length1,1471,201
definitionDH912274|Mus musculus domesticus DNA, BAC clone: B6Ng01-103M16, 5' end.DH912275|Mus musculus domesticus DNA, BAC clone: B6Ng01-103M16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,927,782 - 53,928,941)(54,047,381 - 54,048,586)
sequence
gaattccacaactgctcagctgtcatctctcctaaggggaatgaaagcca
ttagcatgaatggaggagtgtgacttaaaaaaaaagaaaaaggaaaaaga
gacctgtgttgcttttgctgatccgaaattggactaaatctctcatctat
taaacattgagttctctctgaatgaataaacctatactacagagaagttg
tgactcacagatgtaagaagagggggagagagagagagagagaagcaaag
gaaaaaaatgtctactgaccacacattcctacttgaatgaatacgaaggg
cacatagaaagctccagtctaaaccatcataacaacaggtttgaggaaga
gagtcctcttggtgttcaggaacacaaacatgagctgtgctccagccaaa
gtagtaaatcatcaaggctgttcaccagtatgtgtcagataacgaccacc
actaaataaaccaccactaagttaccattggagcccatgtgtcatacatt
atgttaaaccaagctcttcaactccatggcctttaggataagaacacaac
acaccccatctgcagcagcacgccagattaataagttaccactcaataaa
gtgattgagggaagcacgtggaaaagatgacaaagctttgggtaaacaag
agtaaacccctggagcggatatagttatttcctccttgctttatacttca
tataaaattctaagtttccaacaacaattaatcttgtaaatacaaaagag
tagtttttctgatattttgattttccttcaaacaaaacaaagcaactgat
agccacaacaaaaagcagggggcttgttccttattcctcatagctacctg
gttatgacctctggcgtttcctaggaataaggttctgtttgttctttttt
ctcgaaattctattgggatgtatcccgacctaacagccacagaacttcag
aggctcaacgtggggttttccttggtaacttagaagcttgggataaaagt
gagatggtgagtccagttatccttatagtattttgtatctgttctgctag
catctatgacaaatacacatgtagcataactaagcaacgtgtggtgccaa
tgatgatataaatgagacagcagtagaactaagaagaactagtgttc
gaattccagtctctcttctggatgtcccaccttctaatcctgcctcagct
aatcggccaatcagctttttattgacaggtgatgcgtccacacagagatt
attcctacatcccagctaacttagcttctgttaaactgctttcgcgcaca
aaacctcctccagtagctacaaactgagataccaggatggggttttttta
ccttgaaaagtctcttgctttaaatgcttgggactagacttgggtccaga
atagctgagtataatctcagccagctggaataaagactttcaattggcta
tgaactgggtgtgagtggttatctctgatggcctccctgtaacattttca
acacgtgagcgtttgggggatacttcacgtggaaaaccataatagccagt
aacagtcaaggtgtgttagaaagaaagcagaataaactgcaaagtagcgt
tttaactggagattattactaacaacaaagcaagtgtcgttttttcaatg
tgaataaaaactttaggaaggaattctttaggtctaagaggaagcagtta
attgttcactacaatcataaccactttgagatgatatgtgctcagtattg
cccctttcataccatactctatgaaacaactttcttgggctcctggtatg
tgttaccactactgactgagcccatgaccaccattagagcagactgacag
gctcgaaagcaccctggaacttgcagagatgctgtccacgcctcgctgtg
cactgagagcactatcctggccagttttatttggtttcccacagaaatgt
actcacaaactgcaccaaaccaagtcagtcacccatcacgtccttcattc
ctctctcgcaggatctcatcacaaatggaagtgcatgtgattcctaacaa
gcacttctgggagggcgacgtcctgatgaatctcacctgcaaatcagttc
cctctagaaaggtcttccattagttgaccaaagtgctgtttattggggct
aactgtcaccgtgtttctgctaaacatttctgtggtcaaagtaaataagt
gaactgtagttctgtttaagacaaaagaacttcacaagaatgcaagctaa
agcaagttccaagtcctgagcaacttgttttccaaagccaacgtatatgc
actgggtaaggccagcaacagagagagtgcggatgaaccggagagaagga
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_53927782_53928941
seq2: B6Ng01-103M16.b_52_1198

seq1  GAATTCCACAACTGCTCAGCTGTCATCTCTCCTAAGGGGAATGAAAGCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACAACTGCTCAGCTGTCATCTCTCCTAAGGGGAATGAAAGCCA  50

seq1  TTAGCATGAATGGAGGAGTGTGACTTAAAAAAAAAGAAAAAGGAAAAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCATGAATGGAGGAGTGTGACTTAAAAAAAAAGAAAAAGGAAAAAGA  100

seq1  GACCTGTGTTGCTTTTGCTGATCCGAAATTGGACTAAATCTCTCATCTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGTGTTGCTTTTGCTGATCCGAAATTGGACTAAATCTCTCATCTAT  150

seq1  TAAACATTGAGTTCTCTCTGAATGAATAAACCTATACTACAGAGAAGTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACATTGAGTTCTCTCTGAATGAATAAACCTATACTACAGAGAAGTTG  200

seq1  TGACTCACAGATGTAAGAAGAGGGGGAGAGAGAGAGAGAGAGAAGCAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCACAGATGTAAGAAGAGGGGGAGAGAGAGAGAGAGAGAAGCAAAG  250

seq1  GAAAAAAATGTCTACTGACCACACATTCCTACTTGAATGAATACGAAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAATGTCTACTGACCACACATTCCTACTTGAATGAATACGAAGGG  300

seq1  CACATAGAAAGCTCCAGTCTAAACCATCATAACAACAGGTTTGAGGAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAGAAAGCTCCAGTCTAAACCATCATAACAACAGGTTTGAGGAAGA  350

seq1  GAGTCCTCTTGGTGTTCAGGAACACAAACATGAGCTGTGCTCCAGCCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCTCTTGGTGTTCAGGAACACAAACATGAGCTGTGCTCCAGCCAAA  400

seq1  GTAGTAAATCATCAAGGCTGTTCACCAGTATGTGTCAGATAACGACCACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTAAATCATCAAGGCTGTTCACCAGTATGTGTCAGATAACGACCACC  450

seq1  ACTAAATAAACCACCACTAAGTTACCATTGGAGCCCATGTGTCATACATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAATAAACCACCACTAAGTTACCATTGGAGCCCATGTGTCATACATT  500

seq1  ATGTTAAACCAAGCTCTTCAACTCCATGGCCTTTAGGATAAGAACACAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTAAACCAAGCTCTTCAACTCCATGGCCTTTAGGATAAGAACACAAC  550

seq1  ACACCCCATCTGCAGCAGCACGCCAGATTAATAAGTTACCACTCAATAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCCATCTGCAGCAGCACGCCAGATTAATAAGTTACCACTCAATAAA  600

seq1  GTGATTGAGGGAAGCACGTGGAAAAGATGACAAAGCTTTGGGTAAACAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTGAGGGAAGCACGTGGAAAAGATGACAAAGCTTTGGGTAAACAAG  650

seq1  AGTAAACCCCTGGAGCGGATATAGTTATTTCCTCCTTGCTTTATACTTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAACCCCTGGAGCGGATATAGTTATTTCCTCCTTGCTTTATACTTCA  700

seq1  TATAAAATTCTAAGTTTCCAACAACAATTAATCTTGTAAATACAAAAGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAATTCTAAGTTTCCAACAACAATTAATCTTGTAAATACAAAAGAG  750

seq1  TAGTTTTTCTGATATTTTGATTTTCCTTCAAACAAAACAAAGCAACTGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTTTCTGATATTTTGATTTTCCTTCAAACAAAACAAAGCAACTGAT  800

seq1  AGCCACAACAAAAAGCAGGGGGCTTGTTCCTTATTCCTCATAGCTACCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACAACAAAAAGCAGGGGGCTTGTTCCTTATTCCTCATAGCTACCTG  850

seq1  GTTATGACCTCTGGCGTTTCCTAGGAATAAGGTTCTGTTTGTTCTTTTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGACCTCTGGCGTTTCCTAGGAATAAGGTTCTGTTTGTTCTTTTTT  900

seq1  CTCGAAAATTCTATTGGGATGTATCCCGACCT-ACAGCCACAGAACTTCA  949
      |||| ||||||||||||||||||||||||||| |||||||||||||||||
seq2  CTCG-AAATTCTATTGGGATGTATCCCGACCTAACAGCCACAGAACTTCA  949

seq1  GAGGCTCAACGTGGGGTTTTCCTTGGTAACTTAGAAGGCTTGGGATAAAA  999
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GAGGCTCAACGTGGGGTTTTCCTTGGTAACTTAGAA-GCTTGGGATAAAA  998

seq1  GTGAGGATGGTGAGTCCAGTTATCCTTATAGTA-TTTGTATCTGGTTCTG  1048
      |||| |||||||||||||||||||||||||||| ||||||||| ||||||
seq2  GTGA-GATGGTGAGTCCAGTTATCCTTATAGTATTTTGTATCT-GTTCTG  1046

seq1  CTTAGCATCTATGACAAATACACATGTAAGCATTACTAAGCAAACGTGT-  1097
      | ||||||||||||||||||||||||| ||||| ||||||| ||||||| 
seq2  C-TAGCATCTATGACAAATACACATGT-AGCATAACTAAGC-AACGTGTG  1093

seq1  GTGCCATTGATGGATATAAATGAGAAGGAGCCAAGGTAGAACTACAGAAG  1147
      |||||| |||| |||||||||||||   |||    ||||||||| |||||
seq2  GTGCCAATGAT-GATATAAATGAGA--CAGC---AGTAGAACTA-AGAAG  1136

seq1  ACATTAAGTGTTC  1160
      |  |  |||||||
seq2  AACT--AGTGTTC  1147

seq1: chr6_54047381_54048586
seq2: B6Ng01-103M16.g_70_1270 (reverse)

seq1  CTCCTTC-CTCCGGTTCATCCGCATCCTC-CTGTGTGCCTGCCTGTCCAC  48
      ||||||| ||||||||||||||||  ||| |||| |||  |||| | | |
seq2  CTCCTTCTCTCCGGTTCATCCGCACTCTCTCTGT-TGCTGGCCT-TACCC  48

seq1  AGGTGCAT-TACTGTTGCCTTTGGAAACACCAGTTGCTCAGGACTTGGGA  97
      | |||||| ||| |||| ||||||||| || ||||||||||||||||| |
seq2  A-GTGCATATAC-GTTGGCTTTGGAAA-ACAAGTTGCTCAGGACTTGGAA  95

seq1  CTTGCTCTCGGCTCTGCATCCTGGTGAAG-TCTTTTGTCTTAAACAGAAC  146
      |||||| |  ||| ||||| || |||||| ||||||||||||||||||||
seq2  CTTGCT-TTAGCT-TGCATTCTTGTGAAGTTCTTTTGTCTTAAACAGAAC  143

seq1  TACAGTTCACTTATTTACTTTGAACCACAGAAATGTTTAGCAGGAAACAC  196
      |||||||||||||||||||||| ||||||||||||||||||| |||||||
seq2  TACAGTTCACTTATTTACTTTG-ACCACAGAAATGTTTAGCA-GAAACAC  191

seq1  GGTGACAGTTAGCCCCAATAAACAGCACCTTTGGTCAACTAATGGAAGAC  246
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GGTGACAGTTAGCCCCAATAAACAGCA-CTTTGGTCAACTAATGGAAGAC  240

seq1  CTTTCTAGAGGGAACTGATTTGCAGGTGAGATTCATCAGGACGTCGCCCT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTAGAGGGAACTGATTTGCAGGTGAGATTCATCAGGACGTCGCCCT  290

seq1  CCCAGAAGTGCTTGTTAGGAATCACATGCACTTCCATTTGTGATGAGATC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAAGTGCTTGTTAGGAATCACATGCACTTCCATTTGTGATGAGATC  340

seq1  CTGCGAGAGAGGAATGAAGGACGTGATGGGTGACTGACTTGG-TTGGTGC  395
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CTGCGAGAGAGGAATGAAGGACGTGATGGGTGACTGACTTGGTTTGGTGC  390

seq1  AGTTTGTGAGTACATTTCTGTGGGAAACCAAATAAAACTGGCCAGGATAG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGTGAGTACATTTCTGTGGGAAACCAAATAAAACTGGCCAGGATAG  440

seq1  TGCTCTCAGTGCACAGCGAGGCGTGGACAGCATCTCTGCAAGTTCCAGGG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTCAGTGCACAGCGAGGCGTGGACAGCATCTCTGCAAGTTCCAGGG  490

seq1  TGCTTTCGAGCCTGTCAGTCTGCTCTAATGGTGGTCATGGGCTCAGTCAG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTCGAGCCTGTCAGTCTGCTCTAATGGTGGTCATGGGCTCAGTCAG  540

seq1  TAGTGGTAACACATACCAGGAGCCCAAGAAAGTTGTTTCATAGAGTATGG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGGTAACACATACCAGGAGCCCAAGAAAGTTGTTTCATAGAGTATGG  590

seq1  TATGAAAGGGGCAATACTGAGCACATATCATCTCAAAGTGGTTATGATTG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAAGGGGCAATACTGAGCACATATCATCTCAAAGTGGTTATGATTG  640

seq1  TAGTGAACAATTAACTGCTTCCTCTTAGACCTAAAGAATTCCTTCCTAAA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGAACAATTAACTGCTTCCTCTTAGACCTAAAGAATTCCTTCCTAAA  690

seq1  GTTTTTATTCACATTGAAAAAACGACACTTGCTTTGTTGTTAGTAATAAT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTATTCACATTGAAAAAACGACACTTGCTTTGTTGTTAGTAATAAT  740

seq1  CTCCAGTTAAAACGCTACTTTGCAGTTTATTCTGCTTTCTTTCTAACACA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGTTAAAACGCTACTTTGCAGTTTATTCTGCTTTCTTTCTAACACA  790

seq1  CCTTGACTGTTACTGGCTATTATGGTTTTCCACGTGAAGTATCCCCCAAA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGACTGTTACTGGCTATTATGGTTTTCCACGTGAAGTATCCCCCAAA  840

seq1  CGCTCACGTGTTGAAAATGTTACAGGGAGGCCATCAGAGATAACCACTCA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTCACGTGTTGAAAATGTTACAGGGAGGCCATCAGAGATAACCACTCA  890

seq1  CACCCAGTTCATAGCCAATTGAAAGTCTTTATTCCAGCTGGCTGAGATTA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCAGTTCATAGCCAATTGAAAGTCTTTATTCCAGCTGGCTGAGATTA  940

seq1  TACTCAGCTATTCTGGACCCAAGTCTAGTCCCAAGCATTTAAAGCAAGAG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCAGCTATTCTGGACCCAAGTCTAGTCCCAAGCATTTAAAGCAAGAG  990

seq1  ACTTTTCAAGGTAAAAAAACCCCATCCTGGTATCTCAGTTTGTAGCTACT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTCAAGGTAAAAAAACCCCATCCTGGTATCTCAGTTTGTAGCTACT  1040

seq1  GGAGGAGGTTTTGTGCGCGAAAGCAGTTTAACAGAAGCTAAGTTAGCTGG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGGTTTTGTGCGCGAAAGCAGTTTAACAGAAGCTAAGTTAGCTGG  1090

seq1  GATGTAGGAATAATCTCTGTGTGGACGCATCACCTGTCAATAAAAAGCTG  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTAGGAATAATCTCTGTGTGGACGCATCACCTGTCAATAAAAAGCTG  1140

seq1  ATTGGCCGATTAGCTGAGGCAGGATTAGAAGGTGGGACATCCAGAAGAGA  1195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGCCGATTAGCTGAGGCAGGATTAGAAGGTGGGACATCCAGAAGAGA  1190

seq1  GACTGGAATTC  1206
      |||||||||||
seq2  GACTGGAATTC  1201