BAC Information

Click to search

BAC

Clone NameB6Ng01-104B20
Chromosome6 (Build37)
Map Location 81,742,634 - 81,861,273
singlet/doubletdoublet
Overlap geneLOC232143, 1700009C05Rik
Upstream geneLOC100042991
Downstream geneAW146020, Mrpl19, Tmem166, EG622198, Tacr1, Pole4, LOC100043412, Hk2, EG622318
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-104B20.bB6Ng01-104B20.g
ACCDH912508DH912509
length1,184322
definitionDH912508|Mus musculus domesticus DNA, BAC clone: B6Ng01-104B20, 5' end.DH912509|Mus musculus domesticus DNA, BAC clone: B6Ng01-104B20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,742,634 - 81,743,809)(81,860,952 - 81,861,273)
sequence
gaattccaggcaactgagagaaactgttacagaaaccaaggtggaatgtg
agggtaatatactaccacaatacaatatgtacatgtatgataatgtcata
atgaaatctattgctctgcatattatgtatattgttattaatatatgcta
ataaataatatgtgctaatctaaatggtgactgaggaatgacaccaaagg
ttgcctctgacctctaaatgagtgtgcacacatgtatacacacacacaca
cacacagagctatttgagagtcctgtttgggctgagccccacctctgcat
taggagcaccaccggaggtctctgagcagcaggattagcccaaactagta
gttgcaaagtactgatggttgcagataatgatgcaatcaatcagcagata
tctggtacatgagactgttcacagcaatacatgtgtgatattgtttttcc
cctgaataaaataacctcattgcattaaaaattatcactatagacctgct
ttgaagcacatatgagtagtggaaatacacattttcttttgtgactttat
aataaataataataaagtacaacttcaaagaaagctgatatttcagggta
ggggagttctgaaaatttctcaccaagtccccaagctaactttctttctc
tgaaagaagtgcaaacttgaaatctaaagactttagaacttcagggctca
tgtgtcatgtgactgttcctcgcccccttattttactctgcgcacgatat
tctttaagtcctcgttttttaaggacccatgcatattttatgaattgagc
ctaaatgtctcatcatcacacatcccagagactctctgcccagaaactga
tcattagcgggttcattttgtatgctagtggttgtcaaaggccgttctga
agggttacattgagttttgacattaattgatgaacacttaagctcatcat
aactctgctgagattcggagcagcagaaattagaaagatgaatctcatga
gatgaatccattgaaaaggaatgtgactccgcaagtcatactgctcatgc
ctggggacttcgtgacagccaacacagaatgcagtaaggcctcccaagct
gggtgttcaggctgaggctctgcggagagaaaaaaaaaaaagttatttct
ctcccttttagaggaggaggctgtgttacagata
gaattccatatttagcaatttagatatagtcttcacttacgatgatgtgc
acgcagcactttctgtagcagaaaatgaaaatcacaaccgaagcaaatag
aaacctctaaattaggtataggtatgtcaatattgtacaggttaaactat
agcacctttaggtatgttgattatagttagcaaagtgttctgtggctttt
aaaactaaagtgaataaaagtatacacatatacacacacatatggagaaa
tgtgtatatgtatgtatatatatatatatatatatatatatatatatata
tatatatatatatatatatata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_81742634_81743809
seq2: B6Ng01-104B20.b_38_1221

seq1  GAATTCCAGGCAACTGAGAGAAACTGTTACAGAAACCAAGGTGGAATGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGCAACTGAGAGAAACTGTTACAGAAACCAAGGTGGAATGTG  50

seq1  AGGGTAATATACTACCACAATACAATATGTACATGTATGATAATGTCATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTAATATACTACCACAATACAATATGTACATGTATGATAATGTCATA  100

seq1  ATGAAATCTATTGCTCTGCATATTATGTATATTGTTATTAATATATGCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATCTATTGCTCTGCATATTATGTATATTGTTATTAATATATGCTA  150

seq1  ATAAATAATATGTGCTAATCTAAATGGTGACTGAGGAATGACACCAAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAATATGTGCTAATCTAAATGGTGACTGAGGAATGACACCAAAGG  200

seq1  TTGCCTCTGACCTCTAAATGAGTGTGCACACATGTATACACACACACACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTCTGACCTCTAAATGAGTGTGCACACATGTATACACACACACACA  250

seq1  CACACAGAGCTATTTGAGAGTCCTGTTTGGGCTGAGCCCCACCTCTGCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGAGCTATTTGAGAGTCCTGTTTGGGCTGAGCCCCACCTCTGCAT  300

seq1  TAGGAGCACCACCGGAGGTCTCTGAGCAGCAGGATTAGCCCAAACTAGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGCACCACCGGAGGTCTCTGAGCAGCAGGATTAGCCCAAACTAGTA  350

seq1  GTTGCAAAGTACTGATGGTTGCAGATAATGATGCAATCAATCAGCAGATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCAAAGTACTGATGGTTGCAGATAATGATGCAATCAATCAGCAGATA  400

seq1  TCTGGTACATGAGACTGTTCACAGCAATACATGTGTGATATTGTTTTTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTACATGAGACTGTTCACAGCAATACATGTGTGATATTGTTTTTCC  450

seq1  CCTGAATAAAATAACCTCATTGCATTAAAAATTATCACTATAGACCTGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAATAAAATAACCTCATTGCATTAAAAATTATCACTATAGACCTGCT  500

seq1  TTGAAGCACATATGAGTAGTGGAAATACACATTTTCTTTTGTGACTTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGCACATATGAGTAGTGGAAATACACATTTTCTTTTGTGACTTTAT  550

seq1  AATAAATAATAATAAAGTACAACTTCAAAGAAAGCTGATATTTCAGGGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATAATAATAAAGTACAACTTCAAAGAAAGCTGATATTTCAGGGTA  600

seq1  GGGGAGTTCTGAAAATTTCTCACCAAGTCCCCAAGCTAACTTTCTTTCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGTTCTGAAAATTTCTCACCAAGTCCCCAAGCTAACTTTCTTTCTC  650

seq1  TGAAAGAAGTGCAAACTTGAAATCTAAAGACTTTAGAACTTCAGGGCTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGAAGTGCAAACTTGAAATCTAAAGACTTTAGAACTTCAGGGCTCA  700

seq1  TGTGTCATGTGACTGTTCCTCGCCCCCTTATTTTACTCTGCGCACGATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCATGTGACTGTTCCTCGCCCCCTTATTTTACTCTGCGCACGATAT  750

seq1  TCTTTAAGTCCTCGTTTTTTAAGGACCCATGCATATTTTATGAATTGAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAAGTCCTCGTTTTTTAAGGACCCATGCATATTTTATGAATTGAGC  800

seq1  CTAAATGTCTCATCATCACACATCCCAGAGACTCTCTGCCCAGAAACTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATGTCTCATCATCACACATCCCAGAGACTCTCTGCCCAGAAACTGA  850

seq1  TCATTAGCGGGTTCATTTTGTATGCTAGTGGTTGTCAAAGGCCGTTCTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTAGCGGGTTCATTTTGTATGCTAGTGGTTGTCAAAGGCCGTTCTGA  900

seq1  AGGTGTTACATTGAGTTTTGACATTAATTGATGAACACTTAAGCTCATCA  950
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGG-GTTACATTGAGTTTTGACATTAATTGATGAACACTTAAGCTCATCA  949

seq1  TAACTCTGCTGAGATTCGGAGCAGCAGAAATTAGAAAGATGAATCTCAGG  1000
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TAACTCTGCTGAGATTCGGAGCAGCAGAAATTAGAAAGATGAATCTCATG  999

seq1  AGATGAATCCATTGAAAAGGAATGTGACTCCGC-AGTCATTACTGCTCAA  1049
      ||||||||||||||||||||||||||||||||| ||||| |||||||| |
seq2  AGATGAATCCATTGAAAAGGAATGTGACTCCGCAAGTCA-TACTGCTC-A  1047

seq1  TGCCT-GGGACTTCGTGACAGCC-ACACAGAATGCAGTAAAGGCTCCC-A  1096
      ||||| ||||||||||||||||| |||||||||||||||| | ||||| |
seq2  TGCCTGGGGACTTCGTGACAGCCAACACAGAATGCAGTAAGGCCTCCCAA  1097

seq1  GCT-GGTG-TCAGGCTGAAGGCTCCTGC-GAGAGAAAAAAAAAAGAGTTA  1143
      ||| |||| |||||||| ||||| |||| ||||||||||||||| |||||
seq2  GCTGGGTGTTCAGGCTG-AGGCT-CTGCGGAGAGAAAAAAAAAAAAGTTA  1145

seq1  -TTCTCCCCCTTAGAGAGGA----GCTGT-TCACAGATA  1176
       ||||| |||||  ||||||    ||||| | |||||||
seq2  TTTCTCTCCCTTTTAGAGGAGGAGGCTGTGTTACAGATA  1184

seq1: chr6_81860952_81861273
seq2: B6Ng01-104B20.g_65_386 (reverse)

seq1  TATATGTATATATATATATATATATATATATATATATATATATATATATA  50
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATATATATATATATATATATATATATATATATATATATA  50

seq1  TATATATACATACATATACACATTTCTCCATATGTGTGTGTATATGTGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATACATACATATACACATTTCTCCATATGTGTGTGTATATGTGTA  100

seq1  TACTTTTATTCACTTTAGTTTTAAAAGCCACAGAACACTTTGCTAACTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTATTCACTTTAGTTTTAAAAGCCACAGAACACTTTGCTAACTAT  150

seq1  AATCAACATACCTAAAGGTGCTATAGTTTAACCTGTACAATATTGACATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAACATACCTAAAGGTGCTATAGTTTAACCTGTACAATATTGACATA  200

seq1  CCTATACCTAATTTAGAGGTTTCTATTTGCTTCGGTTGTGATTTTCATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATACCTAATTTAGAGGTTTCTATTTGCTTCGGTTGTGATTTTCATTT  250

seq1  TCTGCTACAGAAAGTGCTGCGTGCACATCATCGTAAGTGAAGACTATATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTACAGAAAGTGCTGCGTGCACATCATCGTAAGTGAAGACTATATC  300

seq1  TAAATTGCTAAATATGGAATTC  322
      ||||||||||||||||||||||
seq2  TAAATTGCTAAATATGGAATTC  322