BAC Information

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BAC

Clone NameB6Ng01-104C13
Chromosome6 (Build37)
Map Location 11,311,643 - 11,312,755
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040285, LOC667650, AA545190
Downstream geneNdufa4, Phf14, LOC100040844, EG625347, LOC435879, Thsd7a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-104C13.bB6Ng01-104C13.g
ACCDH912540DH912541
length1,1111,162
definitionDH912540|Mus musculus domesticus DNA, BAC clone: B6Ng01-104C13, 5' end.DH912541|Mus musculus domesticus DNA, BAC clone: B6Ng01-104C13, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaagaagttctgagaaaccctgtctcgaaaaaccaaccccccccc
aaaaggaagttctgacaatgtattttaaacatattcatccttgtagctcc
tacaagatctatgcccatttccccaccctttcacagcttcatagcctcca
ttttgttatttttttaataaccccaaatccaagctgatctcctcctacac
tcctaggtttagagctactcctggagaatggttaccatatcagaagccac
actctgaagactaccaccaccaacaccaccaccgccaccataaccaaacc
aaactaaactaaagcactaccttctcttagaattatcaaaagtaaatagc
actctggtactcacaacctcccttgcatccatgttggaatgttgaacatc
atgatcttgtacaatcagagacactgtgagttcatgagtgaaatggttct
gtcatgtcaaaaatctactgttttacctggttctcctcaaattctgattc
ttacaatctttccacccttctatgcacaatccattgaccttggggggggg
aggtcattgtaatgtagatgtctcttttgtggctcagcactttactgatt
cttattctcagtagttagattggtggtgagatcttggatagatgttgcca
ctgtacaaagaaatttctctgataatgtttattaatctttaggtatgaag
atatgagtttagagagcagtttgatattttgcccatatagcagaatagta
ctagtactttcactcttggggattgtgaaagccacaagtatgggtttctg
gccatggtattgggtatgagtttcctactatggagtagactttacatcca
ttcagaaagtggtttgttacctcataacatccatgccactgtggcatcca
tgagcatatttttgtcatgctagtcatttctatagctagaagtatatatg
gttgaataagattgcttatgaagttttcttccagcacatacgtaacaatt
tccagtactattgaaagcagcaggtcaaagaaggtctctaatactaagtt
aatttctccatacattggaaagatggtggggtttcttcagtgagccattt
taactgtaaaa
gaattctcacctgaggagtaaggaatggctgagaagcacctaaaaatttt
tcaacatccttaaccatcagggaaatgcaaataaaagcaaccctgagatt
ccacctaacaccagtcagaatggctaagatcaaaaattcaggtgacagca
gatgctggcaaggaagtggagaaggaggaacactcctccattgttggtgg
gattgcaagcttgtacaaccactctgtaaatcagtctggcggttcctcag
aaaactggacatagtactacctgaggatccagcaatacctcttctgggta
tatatccagaagatgttccaactggtaagaagggcacacgctccactatg
ttcatagcagccttatttataatagccagaagctggaaagaacccagatg
cccctcaacagaggaatggatacagaaaatgtggtacatttacacaatgg
agtactactcagctattaaaaacaatgaattcatgaaatttctaggcaaa
tggatggacctggaaggcatcatcctgagtgaggtaacccaatcacaaaa
gaactcacatgatatatactcactgataagtggatattatcccagaaatg
tagaatacccaagatacaagatacaatttgaaaacacatgaaactcaaga
agagcgaagaccaaagtgtggacatgttgccccttgttagaattgggaac
aaaatacccatggaaggagttacagagacaaagtttggagctgagacaaa
aggatggaccatctagagactgccatacgccggtatccatcccataatca
gcctccaaacgctaacaccattgcatgcactagcaagattttgctgaaag
gaccagatatagctttctcttgtgaggctatgccggggcctagcaaacac
ataactggatgctcacagtcagctattgatggatcacagggccccagtgg
aggagctagagaaagacccaagagctaaagggtctgcaccctataagtgg
aacaacaatatgactaacgtgtacctccaagcttttgtctcctagcctgc
tatgtatcgaagtagcttagtcgcatcaatggaagaagccattggcttgt
aaaatttattgcctcattcaggaatgccagggcaaaatgaattgggtggt
aggagatggtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_11311643_11312755
seq2: B6Ng01-104C13.b_46_1156 (reverse)

seq1  TTTTACCTGTTAAAATGGCTCACTGAGAAAACACCA-CATTTTTCCATGG  49
      ||||| | ||||||||||||||||||  |||| ||| ||| ||||||  |
seq2  TTTTA-CAGTTAAAATGGCTCACTGAAGAAACCCCACCATCTTTCCAATG  49

seq1  TATGGAGAAATTAACTTTGTATTAGAGAACTTCTTTTGACCTGGCTGGCT  99
      ||||||||||||||||| |||||||||| |||| |||||||| ||| |||
seq2  TATGGAGAAATTAACTTAGTATTAGAGACCTTC-TTTGACCT-GCT-GCT  96

seq1  TTC-ATAGTACTGGAAATTGTAACGTATGGTGCTGGAAGAAAACTTCATA  148
      ||| ||||||||||||||||| |||||| |||||||||||||||||||||
seq2  TTCAATAGTACTGGAAATTGTTACGTAT-GTGCTGGAAGAAAACTTCATA  145

seq1  AGCAATCTTATTCAACCATATATACTTCTAGCTATAGAAATGACTAGCAT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATCTTATTCAACCATATATACTTCTAGCTATAGAAATGACTAGCAT  195

seq1  GAC-AAAATATGCTCATGGATGCCACAGTGGCATGGATGTTATGAGGTAA  247
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAAATATGCTCATGGATGCCACAGTGGCATGGATGTTATGAGGTAA  245

seq1  CAAACCACTTTCTGAATGGATGTAAAGTCTACTCCATAGTAGGAAACTCA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCACTTTCTGAATGGATGTAAAGTCTACTCCATAGTAGGAAACTCA  295

seq1  TACCCAATACCATGGCCAGAAACCCATACTTGTGGCTTTCACAATCCCCA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCAATACCATGGCCAGAAACCCATACTTGTGGCTTTCACAATCCCCA  345

seq1  AGAGTGAAAGTACTAGTACTATTCTGCTATATGGGCAAAATATCAAACTG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGAAAGTACTAGTACTATTCTGCTATATGGGCAAAATATCAAACTG  395

seq1  CTCTCTAAACTCATATCTTCATACCTAAAGATTAATAAACATTATCAGAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTAAACTCATATCTTCATACCTAAAGATTAATAAACATTATCAGAG  445

seq1  AAATTTCTTTGTACAGTGGCAACATCTATCCAAGATCTCACCACCAATCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTCTTTGTACAGTGGCAACATCTATCCAAGATCTCACCACCAATCT  495

seq1  AACTACTGAGAATAAGAATCAGTAAAGTGCTGAGCCACAAAAGAGACATC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTACTGAGAATAAGAATCAGTAAAGTGCTGAGCCACAAAAGAGACATC  545

seq1  TACATTACAATGACCTCCCCCCCCCAAGGTCAATGGATTGTGCATAGAAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTACAATGACCTCCCCCCCCCAAGGTCAATGGATTGTGCATAGAAG  595

seq1  GGTGGAAAGATTGTAAGAATCAGAATTTGAGGAGAACCAGGTAAAACAGT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGAAAGATTGTAAGAATCAGAATTTGAGGAGAACCAGGTAAAACAGT  645

seq1  AGATTTTTGACATGACAGAACCATTTCACTCATGAACTCACAGTGTCTCT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTTGACATGACAGAACCATTTCACTCATGAACTCACAGTGTCTCT  695

seq1  GATTGTACAAGATCATGATGTTCAACATTCCAACATGGATGCAAGGGAGG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGTACAAGATCATGATGTTCAACATTCCAACATGGATGCAAGGGAGG  745

seq1  TTGTGAGTACCAGAGTGCTATTTACTTTTGATAATTCTAAGAGAAGGTAG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAGTACCAGAGTGCTATTTACTTTTGATAATTCTAAGAGAAGGTAG  795

seq1  TGCTTTAGTTTAGTTTGGTTTGGTTATGGTGGCGGTGGTGGTGTTGGTGG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTAGTTTAGTTTGGTTTGGTTATGGTGGCGGTGGTGGTGTTGGTGG  845

seq1  TGGTAGTCTTCAGAGTGTGGCTTCTGATATGGTAACCATTCTCCAGGAGT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGTCTTCAGAGTGTGGCTTCTGATATGGTAACCATTCTCCAGGAGT  895

seq1  AGCTCTAAACCTAGGAGTGTAGGAGGAGATCAGCTTGGATTTGGGGTTAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTAAACCTAGGAGTGTAGGAGGAGATCAGCTTGGATTTGGGGTTAT  945

seq1  TAAAAAAATAACAAAATGGAGGCTATGAAGCTGTGAAAGGGTGGGGAAAT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAATAACAAAATGGAGGCTATGAAGCTGTGAAAGGGTGGGGAAAT  995

seq1  GGGCATAGATCTTGTAGGAGCTACAAGGATGAATATGTTTAAAATACATT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATAGATCTTGTAGGAGCTACAAGGATGAATATGTTTAAAATACATT  1045

seq1  GTCAGAACTTCCTTTTGGGGGGGGGTTGGTTTTTCGAGACAGGGTTTCTC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAACTTCCTTTTGGGGGGGGGTTGGTTTTTCGAGACAGGGTTTCTC  1095

seq1  AGAACTTCTTGAATTC  1113
      ||||||||||||||||
seq2  AGAACTTCTTGAATTC  1111