BAC Information

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BAC

Clone NameB6Ng01-104L02
Chromosome6 (Build37)
Map Location 79,884,832 - 79,886,028
singlet/doubletsinglet
Overlap geneLOC100043392
Upstream geneLOC384440, LOC621815
Downstream geneLrrtm4, LOC100043390
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-104L02.bB6Ng01-104L02.g
ACCDH912914DH912915
length1,1611,170
definitionDH912914|Mus musculus domesticus DNA, BAC clone: B6Ng01-104L02, 5' end.DH912915|Mus musculus domesticus DNA, BAC clone: B6Ng01-104L02, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctcattcccatcactgatccccactgtctcagatctactctactc
tgtgagatggtccagtaagttgtcagaattctttgaaatctcttccaggc
agataaattcctcttcagtctttcccttcttccaaaatgaagttacttag
aaaattttaattctctgaggtctacagtttcaacagtctcataataatga
aatggaagggttcaagtttctttctttctaacatattctctcatgaaaga
ttggtgataatcctagttgagtaagcttaaagcttatcatgaaaaatcta
ttttctctggttcatatatatcactttaaacttttataagcaagtataag
agatgataaaatgttaataatgatggaaagcaaactcaactatcaaaaat
tgacttcgaaatggcagaaatgctggtatcatggtatttatcattagact
ataaatttttgattaccatgctgaaaatggtaatgaacaattgaacaaca
tgtaagaacagatataaaatataagagagagagatcaggctgaaaagatg
gattagcagttaggataacactggctcatacagaggtcaattcccagcat
ccaggtagggtgactcacaaccacctgtaactctggcctcagatgattgt
aactctggcttctgcaagcatgcacccaatatacatacctacacacagac
acatatatacataattaaaactaaaaataatatgcaatgatatttgaaat
atttaaagttaatagaaacaaatacgtcttttaaaggggaataggagcca
ggcatggtagcacatgcctttaatcccagcacttgggaggcagaagaagg
ctgatttctgagttcgaggccagcctggtctacaaagtgtgtttcaggac
agccagggctacacagagaaaccctgttttgaaaaaaaaaaagtcattaa
aagtgaatagggatataaactcaaaaaggatctaagatactttcaaacaa
tatatcactacagaagaaacctagaagactagaagagttagatcatgact
ggaaaatctatgtattttctactaaacataatgaaaaaagagtgagtgaa
gttttggttgactgattttttttccttctgggtatacaaccacattacct
atccatgagtg
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
cttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatgaatacagaaaatgtggtacatctacacaatg
tagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagccccaaacc
taggattcccaagatataagatccaatttgctaaacacatgaaactcaag
aagaatgaagaatgaagtgtggacactatgcccgttcttagaattgggaa
caaaacacccatggaaggagttacagagacaaaatttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttattgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaac
acagaagtggatgctcacagtcagctaatggatggatcacagtctcccaa
tggagagctagagaaagaactcagagctaaagggatctgcaaccgtatag
tggaacaacatatgactacagtacccggagcctctgactcttagctgcat
atgtatcaaagattgctagtcgtccatcactggaaagagaggcccatgga
cacgcaatttaaatggctcagttacaggacgccatgcaaaatgggagagt
ggatgggttaatgagaatct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_79884832_79886028
seq2: B6Ng01-104L02.b_44_1204

seq1  GAATTCTCATTCCCATCACTGATCCCCACTGTCTCAGATCTACTCTACTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATTCCCATCACTGATCCCCACTGTCTCAGATCTACTCTACTC  50

seq1  TGTGAGATGGTCCAGTAAGTTGTCAGAATTCTTTGAAATCTCTTCCAGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGATGGTCCAGTAAGTTGTCAGAATTCTTTGAAATCTCTTCCAGGC  100

seq1  AGATAAATTCCTCTTCAGTCTTTCCCTTCTTCCAAAATGAAGTTACTTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAATTCCTCTTCAGTCTTTCCCTTCTTCCAAAATGAAGTTACTTAG  150

seq1  AAAATTTTAATTCTCTGAGGTCTACAGTTTCAACAGTCTCATAATAATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTTAATTCTCTGAGGTCTACAGTTTCAACAGTCTCATAATAATGA  200

seq1  AATGGAAGGGTTCAAGTTTCTTTCTTTCTAACATATTCTCTCATGAAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAAGGGTTCAAGTTTCTTTCTTTCTAACATATTCTCTCATGAAAGA  250

seq1  TTGGTGATAATCCTAGTTGAGTAAGCTTAAAGCTTATCATGAAAAATCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGATAATCCTAGTTGAGTAAGCTTAAAGCTTATCATGAAAAATCTA  300

seq1  TTTTCTCTGGTTCATATATATCACTTTAAACTTTTATAAGCAAGTATAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCTGGTTCATATATATCACTTTAAACTTTTATAAGCAAGTATAAG  350

seq1  AGATGATAAAATGTTAATAATGATGGAAAGCAAACTCAACTATCAAAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGATAAAATGTTAATAATGATGGAAAGCAAACTCAACTATCAAAAAT  400

seq1  TGACTTCGAAATGGCAGAAATGCTGGTATCATGGTATTTATCATTAGACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTCGAAATGGCAGAAATGCTGGTATCATGGTATTTATCATTAGACT  450

seq1  ATAAATTTTTGATTACCATGCTGAAAATGGTAATGAACAATTGAACAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATTTTTGATTACCATGCTGAAAATGGTAATGAACAATTGAACAACA  500

seq1  TGTAAGAACAGATATAAAATATAAGAGAGAGAGATCAGGCTGAAAAGATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGAACAGATATAAAATATAAGAGAGAGAGATCAGGCTGAAAAGATG  550

seq1  GATTAGCAGTTAGGATAACACTGGCTCATACAGAGGTCAATTCCCAGCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAGCAGTTAGGATAACACTGGCTCATACAGAGGTCAATTCCCAGCAT  600

seq1  CCAGGTAGGGTGACTCACAACCACCTGTAACTCTGGCCTCAGATGATTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTAGGGTGACTCACAACCACCTGTAACTCTGGCCTCAGATGATTGT  650

seq1  AACTCTGGCTTCTGCAAGCATGCACCCAATATACATACCTACACACAGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTGGCTTCTGCAAGCATGCACCCAATATACATACCTACACACAGAC  700

seq1  ACATATATACATAATTAAAACTAAAAATAATATGCAATGATATTTGAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATATACATAATTAAAACTAAAAATAATATGCAATGATATTTGAAAT  750

seq1  ATTTAAAGTTAATAGAAACAAATACGTCTTTTAAAGGGGAATAGGAGCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAAGTTAATAGAAACAAATACGTCTTTTAAAGGGGAATAGGAGCCA  800

seq1  GGCATGGTAGCACATGCCTTTAATCCCAGCACTTGGGAGGCAGAAGAAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGGTAGCACATGCCTTTAATCCCAGCACTTGGGAGGCAGAAGAAGG  850

seq1  CTGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGTGTTTCAGGAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGTGTTTCAGGAC  900

seq1  AGCCAGGGCTACACAGAGAAACCCTGTCTTGAAAAAAAAAAAAAGTCATT  950
      ||||||||||||||||||||||||||| |||  |||||||||||||||||
seq2  AGCCAGGGCTACACAGAGAAACCCTGTTTTG--AAAAAAAAAAAGTCATT  948

seq1  AAAAGTGAATAGGAATATAAACTCAAAAACAGAATCTAAAGATAACTTTC  1000
      ||||||||||||| ||||||||||||||  || |||| ||||| ||||||
seq2  AAAAGTGAATAGGGATATAAACTCAAAA--AGGATCT-AAGAT-ACTTTC  994

seq1  AAAACAAATAATACCACTACAGAAAGAAAACCTAGAAAGACTAGAAAGAG  1050
       ||||||   ||| ||||||||||   |||||||| |||||||| |||||
seq2  -AAACAA--TATATCACTACAGAA--GAAACCTAG-AAGACTAG-AAGAG  1037

seq1  TTAAGAATCAATGACTTGAAAAAATTCTAATGTAAATTTTCCAAACTAAA  1100
      |||   ||| |||||| |||||   ||| ||||  ||||||   ||| ||
seq2  TTA--GATC-ATGACTGGAAAA---TCT-ATGT--ATTTTC--TACT-AA  1075

seq1  ACATAAATGAAAAAAAGAGTAGAGTGGAGGTTTTTGTGTGACTGATTTTT  1150
      |||| |||| |||||||||| ||||| ||  |||||  ||||||||||||
seq2  ACAT-AATG-AAAAAAGAGT-GAGTGAAG--TTTTGGTTGACTGATTTTT  1120

seq1  TTTCCTCCTGGGGTATACAACACACAAATTTACTTATCCCATGAGTG  1197
      |||||| || ||||||||||| ||||   |||| ||| |||||||||
seq2  TTTCCTTCT-GGGTATACAAC-CACA---TTACCTAT-CCATGAGTG  1161