BAC Information

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BAC

Clone NameB6Ng01-104L04
Chromosome6 (Build37)
Map Location 141,376,965 - 141,488,109
singlet/doubletdoublet
Overlap genePde3a, Slco1c1
Upstream genePlekha5, Aebp2, EG664868, LOC664875
Downstream geneSlco1b2, EG435927, Slco1a4, LOC100042750, EG664913, Slco1a1, EG625716, Slco1a6, Slco1a5, Iapp, BC027061, Recql, Golt1b, B230216G23Rik, Gys2, Ldhb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-104L04.bB6Ng01-104L04.g
ACCDH912918DH912919
length1,220908
definitionDH912918|Mus musculus domesticus DNA, BAC clone: B6Ng01-104L04, 5' end.DH912919|Mus musculus domesticus DNA, BAC clone: B6Ng01-104L04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(141,486,851 - 141,488,109)(141,376,965 - 141,377,867)
sequence
gaattcttactctggatttcccctctaggtaatgaagttggctggaaatt
attacacacacacacacacacacacacacacagaggagactgaagcagga
aggctgtgaatttaaggctatctgagctatctactaagctgaatatctga
caagctagagccacctagcacgatacctactttctgaaaacaagacaaaa
ttatactttttaagacaaggagaaggagagccgccattgatggggaagtt
ggggaagatggatgctttagacttacttctccatgaagaactggggtaca
gcaatgagcatagttccgaagcccatgaccaggcatcctgctccaattat
ttttggcctgtgaagtttggcaccaaagtagctaacaaacgttatgacca
ggagattccctttgggggcaagaagaagcattcttggtcagattagggag
cctaggaaacagcccacagcgaaagcaaacaaatgatgtacactgagcag
agcttcacttaaaagaagccccctgtcatgttgcttgctcccctgggagc
caaagtagctgctaattcatgactttaatcacctcatccttttttgtcaa
aatattccagttaccatccctctcccattttgctttaccacgactgacca
tttgttcctttaaaagcctgttatcagaaaactagattgtagacagaggg
ctgtagagatggctgcttggtggagagagcctactgctcttacagaggac
aaggttttgttcccagcacccaaactgggtaactccctgctccctgtagc
cctggctgtagggggtctgacaccctcctctgaacttcaaggacacccac
attcgtatgcacacacctacacacataattaaaacttaaaaataaatcta
aattatataaagcttctttgggttgatatttaaatttttttcatgacttt
gcagcaaatttcattagtttcttcattaactaatgctttgggattaaagc
ttccgttagtttcccagtttttttttttttgaatatagatctatatttat
ctttacagctatttcccaagaaagtatacaaaacaggtgaatactcactt
atgaaacaaaaatagactccaatacaaatgaaatcttgattgtccaagac
ttcttcaagaactcaataggaattgttccgacacatagcctcgaaggcaa
cttgaatacaatatttttac
gaattccacagaaactgttggtttcgaaggattagttgactgggataata
gaaagaaaggaccattccagagataacgcggcagccacacgggtgttatt
atagatacccaaggtccagaactgtttagtgaatttagacctgtgatcac
agcagccattaaccagaatgtgttttgacaagcctaggactttttggttc
ttttctgttgctgtttctattgatcacagggatagggaaattgctgcaaa
ttgttttgccatttacttttgtaacactgagagcaactgcgtatgctaag
tcagaggaataaatgcacacactactattaaagcaatactccctcgcccc
ttgactgtgcgctcacatgctaggtttctgtcaaatatgcaaatatacca
catttcctaacagccacagttaatggcataaattaatctctcaaattcag
tttggctttaacaaaacgactgtaacccataaagaaacagtttcacaatg
tagtcaatagaaggaagacagccttgacccccccactcctgcctcagagg
caaatggagggtttcgctatcaagaaaattatagcttttaggtttgttta
tcactgaaatttttaaacaaccttccttataatgagctaatttgggcttg
ggaaaactagtgtaaaactgttctttctaaatttccttttaaaattatgt
aaagcgctctcaaaatttggactttaatccccaattagaaccaaggaaag
ctagaaatagttcctcaccgtgacaaatctattaaatgtagctatcatgg
ggaggaagcaatgtaaagccaattgaaattcttctccttggaatttattc
gaatttgaagaaaagtcttaggattttattttttcttaccgtctcccttt
ggtttttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_141486851_141488109
seq2: B6Ng01-104L04.b_46_1265 (reverse)

seq1  GTAAAAATATTGTATTCATGGTTTTTGTGCCTTGAGGGTTAGTTGTTTGT  50
      |||||||||||||||||| |       ||||||   || ||    | |||
seq2  GTAAAAATATTGTATTCAAG------TTGCCTTCGAGGCTA----TGTGT  40

seq1  GGGGACAAATTTTCTATATTGAGTCTCTTTGTAAAGAAGTCTTTGAACAA  100
       || ||||   |||  |||||||| |||   | |||||||| ||| ||||
seq2  CGGAACAA---TTC-CTATTGAGT-TCT---TGAAGAAGTC-TTGGACAA  81

seq1  TTACAAAGTATCATTTGTGTAATTGTGGGTCTAATTTTTTGTTTCATTTA  150
      |  |||  | ||||||||   |||| | |||||  ||||||||||||   
seq2  T--CAAGATTTCATTTGT---ATTG-GAGTCTA--TTTTTGTTTCAT---  120

seq1  AAGTGAGTTATTCACCTGTTTTTGTAATACCTTTCTTTGGGGAATATTAG  200
      ||||||| |||||||||| |||||| ||| |||||||  ||||  | |||
seq2  AAGTGAG-TATTCACCTG-TTTTGT-ATA-CTTTCTT--GGGA--AATAG  162

seq1  CTGTAGAGAT-AATATAGGATCTATATTTCAAAAAAAAAAAAAACTGGGA  249
      ||||| |||| |||||| ||||||||||   |||||||||||||||||||
seq2  CTGTAAAGATAAATATA-GATCTATATT--CAAAAAAAAAAAAACTGGGA  209

seq1  AACTAACGGAAGCTTTAAT-CCAAAGCATTAGTTAATGAAGAAACTAATG  298
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AACTAACGGAAGCTTTAATCCCAAAGCATTAGTTAATGAAGAAACTAATG  259

seq1  AAATTTGCTGCAAAGTCATGAAAAAAATTTAAATATCAACCCAAAGAAGC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTGCTGCAAAGTCATGAAAAAAATTTAAATATCAACCCAAAGAAGC  309

seq1  TTTATATAATTTAGATTTATTTTTAAGTTTTAATTATGTGTGTAGGTGTG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATAATTTAGATTTATTTTTAAGTTTTAATTATGTGTGTAGGTGTG  359

seq1  TGCATACGAATGTGGGTGTCCTTGAAGTTCAGAGGAGGGTGTCAGACCCC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATACGAATGTGGGTGTCCTTGAAGTTCAGAGGAGGGTGTCAGACCCC  409

seq1  CTACAGCCAGGGCTACAGGGAGCAGGGAGTTACCCAGTTTGGGTGCTGGG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGCCAGGGCTACAGGGAGCAGGGAGTTACCCAGTTTGGGTGCTGGG  459

seq1  AACAAAACCTTGTCCTCTGTAAGAGCAGTAGGCTCTCTCCACCAAGCAGC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAACCTTGTCCTCTGTAAGAGCAGTAGGCTCTCTCCACCAAGCAGC  509

seq1  CATCTCTACAGCCCTCTGTCTACAATCTAGTTTTCTGATAACAGGCTTTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCTACAGCCCTCTGTCTACAATCTAGTTTTCTGATAACAGGCTTTT  559

seq1  AAAGGAACAAATGGTCAGTCGTGGTAAAGCAAAATGGGAGAGGGATGGTA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAACAAATGGTCAGTCGTGGTAAAGCAAAATGGGAGAGGGATGGTA  609

seq1  ACTGGAATATTTTGACAAAAAAGGATGAGGTGATTAAAGTCATGAATTAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAATATTTTGACAAAAAAGGATGAGGTGATTAAAGTCATGAATTAG  659

seq1  CAGCTACTTTGGCTCCCAGGGGAGCAAGCAACATGACAGGGGGCTTCTTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTACTTTGGCTCCCAGGGGAGCAAGCAACATGACAGGGGGCTTCTTT  709

seq1  TAAGTGAAGCTCTGCTCAGTGTACATCATTTGTTTGCTTTCGCTGTGGGC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGAAGCTCTGCTCAGTGTACATCATTTGTTTGCTTTCGCTGTGGGC  759

seq1  TGTTTCCTAGGCTCCCTAATCTGACCAAGAATGCTTCTTCTTGCCCCCAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCCTAGGCTCCCTAATCTGACCAAGAATGCTTCTTCTTGCCCCCAA  809

seq1  AGGGAATCTCCTGGTCATAACGTTTGTTAGCTACTTTGGTGCCAAACTTC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAATCTCCTGGTCATAACGTTTGTTAGCTACTTTGGTGCCAAACTTC  859

seq1  ACAGGCCAAAAATAATTGGAGCAGGATGCCTGGTCATGGGCTTCGGAACT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCCAAAAATAATTGGAGCAGGATGCCTGGTCATGGGCTTCGGAACT  909

seq1  ATGCTCATTGCTGTACCCCAGTTCTTCATGGAGAAGTAAGTCTAAAGCAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCATTGCTGTACCCCAGTTCTTCATGGAGAAGTAAGTCTAAAGCAT  959

seq1  CCATCTTCCCCAACTTCCCCATCAATGGCGGCTCTCCTTCTCCTTGTCTT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTTCCCCAACTTCCCCATCAATGGCGGCTCTCCTTCTCCTTGTCTT  1009

seq1  AAAAAGTATAATTTTGTCTTGTTTTCAGAAAGTAGGTATCGTGCTAGGTG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTATAATTTTGTCTTGTTTTCAGAAAGTAGGTATCGTGCTAGGTG  1059

seq1  GCTCTAGCTTGTCAGATATTCAGCTTAGTAGATAGCTCAGATAGCCTTAA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTAGCTTGTCAGATATTCAGCTTAGTAGATAGCTCAGATAGCCTTAA  1109

seq1  ATTCACAGCCTTCCTGCTTCAGTCTCCTCTGTGTGTGTGTGTGTGTGTGT  1198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACAGCCTTCCTGCTTCAGTCTCCTCTGTGTGTGTGTGTGTGTGTGT  1159

seq1  GTGTGTGTAATAATTTCCAGCCAACTTCATTACCTAGAGGGGAAATCCAG  1248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTAATAATTTCCAGCCAACTTCATTACCTAGAGGGGAAATCCAG  1209

seq1  AGTAAGAATTC  1259
      |||||||||||
seq2  AGTAAGAATTC  1220

seq1: chr6_141376965_141377867
seq2: B6Ng01-104L04.g_70_977

seq1  GAATTCCACAGAAACTGTTGGTTTCGAAGGATTAGTTGACTGGGATAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACAGAAACTGTTGGTTTCGAAGGATTAGTTGACTGGGATAATA  50

seq1  GAAAGAAAGGACCATTCCAGAGATAACGCGGCAGCCACACGGGTGTTATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAAGGACCATTCCAGAGATAACGCGGCAGCCACACGGGTGTTATT  100

seq1  ATAGATACCCAAGGTCCAGAACTGTTTAGTGAATTTAGACCTGTGATCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATACCCAAGGTCCAGAACTGTTTAGTGAATTTAGACCTGTGATCAC  150

seq1  AGCAGCCATTAACCAGAATGTGTTTTGACAAGCCTAGGACTTTTTGGTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCCATTAACCAGAATGTGTTTTGACAAGCCTAGGACTTTTTGGTTC  200

seq1  TTTTCTGTTGCTGTTTCTATTGATCACAGGGATAGGGAAATTGCTGCAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGTTGCTGTTTCTATTGATCACAGGGATAGGGAAATTGCTGCAAA  250

seq1  TTGTTTTGCCATTTACTTTTGTAACACTGAGAGCAACTGCGTATGCTAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTGCCATTTACTTTTGTAACACTGAGAGCAACTGCGTATGCTAAG  300

seq1  TCAGAGGAATAAATGCACACACTACTATTAAAGCAATACTCCCTCGCCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGGAATAAATGCACACACTACTATTAAAGCAATACTCCCTCGCCCC  350

seq1  TTGACTGTGCGCTCACATGCTAGGTTTCTGTCAAATATGCAAATATACCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTGTGCGCTCACATGCTAGGTTTCTGTCAAATATGCAAATATACCA  400

seq1  CATTTCCTAACAGCCACAGTTAATGGCATAAATTAATCTCTCAAATTCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCCTAACAGCCACAGTTAATGGCATAAATTAATCTCTCAAATTCAG  450

seq1  TTTGGCTTTAACAAAACGACTGTAACCCATAAAGAAACAGTTTCACAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCTTTAACAAAACGACTGTAACCCATAAAGAAACAGTTTCACAATG  500

seq1  TAGTCAATAGAAGGAAGACAGCCTTGACCCCCCCACTCCTGCCTCAGAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCAATAGAAGGAAGACAGCCTTGACCCCCCCACTCCTGCCTCAGAGG  550

seq1  CAAATGGAGGGTTTCGCTATCAAGAAAATTATAGCTTTTAGGTTTGTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGGAGGGTTTCGCTATCAAGAAAATTATAGCTTTTAGGTTTGTTTA  600

seq1  TCACTGAAATTTTTAAACAACCTTCCTTATAATGAGCTAATTTGGGCTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGAAATTTTTAAACAACCTTCCTTATAATGAGCTAATTTGGGCTTG  650

seq1  GGAAAACTAGTGTAAAACTGTTCTTTCTAAATTTCCTTTTAAAATTATGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAACTAGTGTAAAACTGTTCTTTCTAAATTTCCTTTTAAAATTATGT  700

seq1  AAAGCGCTCTCAAAA-TTGGAC-TTAATCCCCAA-TAGAACCAAGGAAAG  747
      ||||||||||||||| |||||| ||||||||||| |||||||||||||||
seq2  AAAGCGCTCTCAAAATTTGGACTTTAATCCCCAATTAGAACCAAGGAAAG  750

seq1  CTAGAAATAGTTCCTCACCGTGACAAATCTATTAAATGTAGCTATCAT-G  796
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CTAGAAATAGTTCCTCACCGTGACAAATCTATTAAATGTAGCTATCATGG  800

seq1  GGAGGAAGCAATGTAAAGCCAAATGAAATTCTTCTCCATGGAAATTATCA  846
      |||||||||||||||||||||| |||||||||||||| ||||| ||||  
seq2  GGAGGAAGCAATGTAAAGCCAATTGAAATTCTTCTCCTTGGAATTTATTC  850

seq1  GAATTTGAAGAAAAG-CCTAGGATTTTA-TTTTTCTTAACGTCTCTCATT  894
      ||||||||||||||| | |||||||||| ||||||||| |||||| | ||
seq2  GAATTTGAAGAAAAGTCTTAGGATTTTATTTTTTCTTACCGTCTC-CCTT  899

seq1  TGGTTTTAC  903
      ||||||| |
seq2  TGGTTTTTC  908