BAC Information

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BAC

Clone NameB6Ng01-104P01
Chromosome6 (Build37)
Map Location 145,328,981 - 145,466,082
singlet/doubletdoublet
Overlap gene1700073E17Rik, Ifltd1
Upstream gene4933425H06Rik, EG665149, Bcat1, Lrmp, Casc1, Lyrm5, Kras, LOC100039495, LOC100042866, LOC546917
Downstream geneLOC100042879, Tuba3b, Rassf8, Bhlhb3, Sspn, Itpr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-104P01.bB6Ng01-104P01.g
ACCDH913096DH913097
length1,214609
definitionDH913096|Mus musculus domesticus DNA, BAC clone: B6Ng01-104P01, 5' end.DH913097|Mus musculus domesticus DNA, BAC clone: B6Ng01-104P01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(145,464,886 - 145,466,082)(145,328,981 - 145,329,590)
sequence
gaattctttacaaagctttattcaccctcaaggaaaactcaaggaactga
aactgctttattatatcaaagcaagcagtcagcagagagaaaaaaaatgg
tcttacatcctaagggagaaagagaattttctagaatcgaagactgttga
catgaagcatctgtccaacatcaaagccgtgggttataaatgttatagat
aaccaatcatcccaaatccacaaaggcgggagctgagaggcattagaaca
tcagaaatggcaaaggaacccgcagcccggaaggagctggagccgagcag
agcaccatccagcctgagggtccggagacttgctgtcctcatgaatagta
atgagcaggcccagcgcaggcactgatgggctgaggctgcagcagctcag
gacattgcaacattgttgcatatgcagtagttccgctaaagagctcagct
agagttttaaacgtcagaaccaaacacaactctcacttgtgtatgcccac
ttatggattctttggcgttgtcccactttttaaagaaaagatgaagtttt
aaatttccaagtgactttttactaagtcggcctgatgataaaaacaagag
gtcttcttgcacagtgctcacagagggcgtctacttagtggccatttgca
aagtcctgtgtggtcattttcttttggatgttaatcatcttcagttgcaa
gatatctgaaccctcccaggcattaaagaaatatcaaaattttgctgcac
attcttgctgtgtgcttctgtagcacgtccagggccgttactgcattggg
accagcagcaagcatacattatggggtagctgggaaagatcgaataatgg
cagagttaaacttcagttccaccagagcctagtttggtgaccaggcttgc
tgttaacaaaccacgggtgaggtgtgagtgacccccacatagctgcccca
ctgcacaatcccactgacatggagaactgacctccttgaatgctgcatca
acggagcccgctttccataaactccaccttcttgtgtgtggtgtagcatt
tgccatgatcccttgctgtttggtggaggcaacacctggaacttagctga
gggtctccctgaacctctgaccttcttgactgtctttctccatcacatgg
ggaaatgagggctctgtttggtcattgctacagacctgggtaaccactgg
gggtgtttttgctc
gaattcactcattagcagagatccaagaatgaggcatgacttggaagaca
cagatcagtctgagtgaatgtttgaagccggactaaggattatgaggtgg
taaggagagaagagtcagtaagcaatggcccacagccacaagcaggtctc
gtataaggggcacacgtgaaactgcagttgcaagataagctgagtgtatg
aaccttgatctgcacagaacctccctggaatcgtctttgcagaggtttgt
gcccccagtgactcataatctagtcaagttgacaatgacagtgaacctca
gctcataaagccactcttctgccctttagccaatgacactggctctctct
acccaacttttctttaaatgtgcttaagttcaaagatttgtaaaaaaata
aaaataaaaaaatgctttctgtacgccaactattgccaactgcctccttt
gtctgtcgttttcagcaaggaaactgacaagggaataaggttcccgaagc
ttagcagctcacccggggcccatgaaggaatccgtgcagctgcgtcacta
tggtccgcttttcctataacagattttttggtctccagtggtgcctgaga
gatgctgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_145464886_145466082
seq2: B6Ng01-104P01.b_42_1255 (reverse)

seq1  GAGCAAA---ACACCCAGTGGT--ACCAGGTCTGTAGCAATGAC--AACA  43
      |||||||   || |||||||||   |||||||||||||||||||  ||||
seq2  GAGCAAAAACACCCCCAGTGGTTACCCAGGTCTGTAGCAATGACCAAACA  50

seq1  GAGCCACTCATATCCCCA-GTGATGGGAGAAAG-CAGGTCAGGAGGTCAG  91
      ||||| ||||| |||||| ||||| |||||||| |||   || |||||||
seq2  GAGCC-CTCATTTCCCCATGTGAT-GGAGAAAGACAGTCAAGAAGGTCAG  98

seq1  GAGGTCA-GGAGACCCTCAGCTAAAGTTCCAGGTGTTGCCTCCACC-AAC  139
        | ||| |||||||||||||| ||||||||||||||||||||||| |||
seq2  AGGTTCAGGGAGACCCTCAGCT-AAGTTCCAGGTGTTGCCTCCACCAAAC  147

seq1  AGCAAGGGATCATGGCAAATGCTACA-CACACACAGGAAGTGGGAGGTTA  188
      |||||||||||||||||||||||||| |||||||| ||||  ||| ||| 
seq2  AGCAAGGGATCATGGCAAATGCTACACCACACACAAGAAGGTGGA-GTTT  196

seq1  ATGGAAAGCGGGCTCCG-TGATGCAGCATTC-AGGAGGTCTG-TCTCCAT  235
      ||||||||||||||||| ||||||||||||| |||||||| | |||||||
seq2  ATGGAAAGCGGGCTCCGTTGATGCAGCATTCAAGGAGGTCAGTTCTCCAT  246

seq1  GTCAGTGGGATTGTGCAGTGGGGCAGCTATGTGGGGGTCACTCACACCTC  285
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTGGGATTGTGCAGTGGGGCAGCTATGTGGGGGTCACTCACACCTC  296

seq1  AACCGTGGTTTG-TAACAGCAAGCCTGGTCACCAAACTAGGCTCTGGTGG  334
      | |||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ACCCGTGGTTTGTTAACAGCAAGCCTGGTCACCAAACTAGGCTCTGGTGG  346

seq1  AACTGAAGTTTAACTCTGCCATTATTCGATC-TTCCCAGCTA-CCCATAA  382
      ||||||||||||||||||||||||||||||| |||||||||| |||||||
seq2  AACTGAAGTTTAACTCTGCCATTATTCGATCTTTCCCAGCTACCCCATAA  396

seq1  TGTATGCTTGCTGCTGGT-CCAATGCAGTAACGG-CCTGGACGTGCTACA  430
      |||||||||||||||||| ||||||||||||||| |||||||||||||||
seq2  TGTATGCTTGCTGCTGGTCCCAATGCAGTAACGGCCCTGGACGTGCTACA  446

seq1  GAAGCACACAGCAAGAATGTGCAGCAAAATTTTGATA-TTCTTTAATGCC  479
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GAAGCACACAGCAAGAATGTGCAGCAAAATTTTGATATTTCTTTAATGCC  496

seq1  TGGGAGGGTTCAGATATCTTGCAACTGAAGATGATTAACATCCAAAAGAA  529
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGGGTTCAGATATCTTGCAACTGAAGATGATTAACATCCAAAAGAA  546

seq1  AATGACCACACAGGACTTTGCAAATGGCCACTAAGTAGACGCCCTCTGTG  579
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACCACACAGGACTTTGCAAATGGCCACTAAGTAGACGCCCTCTGTG  596

seq1  AGCACTGTGCAAGAAGACCTCTTGTTTTTATCATCAGGCCGACTTAGTAA  629
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTGTGCAAGAAGACCTCTTGTTTTTATCATCAGGCCGACTTAGTAA  646

seq1  AAAGTCACTTGGAAATTTAAAACTTCATCTTTTCTTTAAAAAGTGGGACA  679
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCACTTGGAAATTTAAAACTTCATCTTTTCTTTAAAAAGTGGGACA  696

seq1  ACGCCAAAGAATCCATAAGTGGGCATACACAAGTGAGAGTTGTGTTTGGT  729
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCAAAGAATCCATAAGTGGGCATACACAAGTGAGAGTTGTGTTTGGT  746

seq1  TCTGACGTTTAAAACTCTAGCTGAGCTCTTTAGCGGAACTACTGCATATG  779
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACGTTTAAAACTCTAGCTGAGCTCTTTAGCGGAACTACTGCATATG  796

seq1  CAACAATGTTGCAATGTCCTGAGCTGCTGCAGCCTCAGCCCATCAGTGCC  829
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAATGTTGCAATGTCCTGAGCTGCTGCAGCCTCAGCCCATCAGTGCC  846

seq1  TGCGCTGGGCCTGCTCATTACTATTCATGAGGACAGCAAGTCTCCGGACC  879
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGCTGGGCCTGCTCATTACTATTCATGAGGACAGCAAGTCTCCGGACC  896

seq1  CTCAGGCTGGATGGTGCTCTGCTCGGCTCCAGCTCCTTCCGGGCTGCGGG  929
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGCTGGATGGTGCTCTGCTCGGCTCCAGCTCCTTCCGGGCTGCGGG  946

seq1  TTCCTTTGCCATTTCTGATGTTCTAATGCCTCTCAGCTCCCGCCTTTGTG  979
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTGCCATTTCTGATGTTCTAATGCCTCTCAGCTCCCGCCTTTGTG  996

seq1  GATTTGGGATGATTGGTTATCTATAACATTTATAACCCACGGCTTTGATG  1029
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGGGATGATTGGTTATCTATAACATTTATAACCCACGGCTTTGATG  1046

seq1  TTGGACAGATGCTTCATGTCAACAGTCTTCGATTCTAGAAAATTCTCTTT  1079
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGACAGATGCTTCATGTCAACAGTCTTCGATTCTAGAAAATTCTCTTT  1096

seq1  CTCCCTTAGGATGTAAGACCATTTTTTTTCTCTCTGCTGACTGCTTGCTT  1129
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTTAGGATGTAAGACCATTTTTTTTCTCTCTGCTGACTGCTTGCTT  1146

seq1  TGATATAATAAAGCAGTTTCAGTTCCTTGAGTTTTCCTTGAGGGTGAATA  1179
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATAATAAAGCAGTTTCAGTTCCTTGAGTTTTCCTTGAGGGTGAATA  1196

seq1  AAGCTTTGTAAAGAATTC  1197
      ||||||||||||||||||
seq2  AAGCTTTGTAAAGAATTC  1214

seq1: chr6_145328981_145329590
seq2: B6Ng01-104P01.g_69_677

seq1  GAATTCACTCATTAGCAGAGATCCAAGAATGAGGCATGACTTGGAAGACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCATTAGCAGAGATCCAAGAATGAGGCATGACTTGGAAGACA  50

seq1  CAGATCAGTCTGAGTGAATGTTTGAAGCCGGACTAAGGATTATGAGGTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCAGTCTGAGTGAATGTTTGAAGCCGGACTAAGGATTATGAGGTGG  100

seq1  TAAGGAGAGAAGAGTCAGTAAGCAATGGCCCACAGCCACAAGCAGGTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAGAGAAGAGTCAGTAAGCAATGGCCCACAGCCACAAGCAGGTCTC  150

seq1  GTATAAGGGGCACACGTGAAACTGCAGTTGCAAGATAAGCTGAGTGTATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAAGGGGCACACGTGAAACTGCAGTTGCAAGATAAGCTGAGTGTATG  200

seq1  AACCTTGATCTGCACAGAACCTCCCTGGAATCGTCTTTGCAGAGGTTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTGATCTGCACAGAACCTCCCTGGAATCGTCTTTGCAGAGGTTTGT  250

seq1  GCCCCCAGTGACTCATAATCTAGTCAAGTTGACAATGACAGTGAACCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCCAGTGACTCATAATCTAGTCAAGTTGACAATGACAGTGAACCTCA  300

seq1  GCTCATAAAGCCACTCTTCTGCCCTTTAGCCAATGACACTGGCTCTCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATAAAGCCACTCTTCTGCCCTTTAGCCAATGACACTGGCTCTCTCT  350

seq1  ACCCAACTTTTCTTTAAATGTGCTTAAGTTCAAAGATTTGTAAAAAAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAACTTTTCTTTAAATGTGCTTAAGTTCAAAGATTTGTAAAAAAATA  400

seq1  AAAATAAAAAAATGCTTTCTGTACGCCAACTATTGCCAACTGCCTCCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAAAAAATGCTTTCTGTACGCCAACTATTGCCAACTGCCTCCTTT  450

seq1  GTCTGTCGTTTATCAGCAAGGAAACTGACAAGGGAATAAGGTTCCCGAAG  500
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTCGTTT-TCAGCAAGGAAACTGACAAGGGAATAAGGTTCCCGAAG  499

seq1  CTTAGCAGCTCACCCGGGGCCCATGAAGGAATCCGTGCAGCTGCGTCACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCAGCTCACCCGGGGCCCATGAAGGAATCCGTGCAGCTGCGTCACT  549

seq1  ATGGTCCGCTTTTCCTAGAACAGAGCTATGGGTCTCCAGTGGTGCCTGAG  600
      ||||||||||||||||| ||||||  | | ||||||||||||||||||||
seq2  ATGGTCCGCTTTTCCTATAACAGATTTTTTGGTCTCCAGTGGTGCCTGAG  599

seq1  AGATGCTGCT  610
      |||||||| |
seq2  AGATGCTGTT  609