BAC Information

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BAC

Clone NameB6Ng01-105K19
Chromosome16 (Build37)6 (Build37)
Map Location 60,775,888 - 60,776,400117,095,820 - 117,096,719
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEpha6, LOC100043804, EG668168, LOC668170
Downstream geneLOC100043524, LOC668183
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-105K19.bB6Ng01-105K19.g
ACCDH913630DH913631
length913905
definitionDH913630|Mus musculus domesticus DNA, BAC clone: B6Ng01-105K19, 5' end.DH913631|Mus musculus domesticus DNA, BAC clone: B6Ng01-105K19, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(60,775,888 - 60,776,400)(117,095,820 - 117,096,719)
sequence
gaattcctgatctttccaagacttttatcctgaatgggtgttggattttg
ttgaatgctttctccgcgtctaaggagatgatcatgtggtttttgtcttt
gagtttgcttataaaatggattacgttggtggatttccgtatattaaacc
atccctgcatccctggaataaaacctatttggtcaagatggatgattgtt
ttaatgtgaattttattgagtatttttgcatcgatattcataagggaaat
tggtctgaagttctctatctttgttggatctttctgttgtttaggtatca
gagtaattgtggcttcatagaatgagttgggtagagtaccttctacttct
attttgtggaatattttgtgcagaactggaattagatcttctttgaaggt
ctgatagaactctgcactaaacccaactggaccatggactttttttggtt
gggagactattaatgactgcttctatttctttaggggatatgggactgtt
tagattgttaacttgatcctgatttaactttggtacctggtatctgtcta
gaaatttgtccacttcgtccaggttttccagttttgttgagtatagcctt
ttgtagaaggatctgatggtgttttggatttcttcaggatctgttgttat
gtctcgcttttcatttctgattttgtttaattaggatgctgtacctgtgc
ccctcttagtgagtctggctaagggtttatctatcttgttgatttttctc
aagaaccagatctcttcgtttggttgattcttttgaatagttcttcttgt
tttccacttcgtgatttcgtccctgagtttgattatttccctgccatcaa
ctcctcttggtgatttgcatcctttttttttagagcctttaggagtgttg
tcaagctgctagt
gaattccaggccagaagtccactaggggacctgactgcaaaagctgaatc
aaggaccctgaaaccaggtgacctggataaggcttagtcaccaacattta
tttccttgtgtcaacatatgattggacgatgctgcagcccaccctgctcc
ctcttgcttaggggttccatcccttaaaagtgctgtacaacttctctttg
tggttgcagttcagctcccgagtctgttctgcagctctgatcagtcacta
gcagcctgtgtacagtaacattttgttgtctgcttaaatacttactaaga
catacgtacaaagacacagtaggctcccgcgtctatgctgttgtccctga
ctgatcagattttgctgcccagttcaaataaagatcttgctttgctggac
tcttgtgactgcttggggagttttggtttttcgaacccaacagtctcagc
tgcagtctacagctaatggttagtttttttacagacaatctaggatgttc
ctacttctacgtagaaagttattatttctatttgcagtgagaaccttggt
acatatgagaacttactgggtaggagcttgttaataattacttaaattaa
taattacttaaaataccatcttcccttacctccggtctgtctgtctgatc
caggaagtagctctttgaaacaggagtacatagactccctgctcttctgt
ggttttggcttttcaggtactttgtagtttaactgcagtccagagataca
aaggagaagattctgaaagtcaaggagcagaagggagtctcatgcaggtt
agcactgtcttactggggaagtgaaacatctacctgcctgttctccatgc
tgtgcacatgatctaactgtttagcactcagcatcttccttgtcatattg
aattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_60775888_60776400
seq2: B6Ng01-105K19.b_438_956 (reverse)

seq1  ACTAGCAGCTTGACAACACATCTAAAAGCCCTAGAAAAAAAGGAAGCAAA  50
      |||||||||||||||||||  ||||| || ||| |||||||||| |||||
seq2  ACTAGCAGCTTGACAACACTCCTAAAGGCTCTAAAAAAAAAGGATGCAAA  50

seq1  TTCACCCAAGAGGAGTAGACGGCA-GGAAATAATCAAACTCAGGGGTGAA  99
       ||| ||||||||||| || |||| ||||||||||||||||||||  |||
seq2  -TCA-CCAAGAGGAGTTGATGGCAGGGAAATAATCAAACTCAGGGACGAA  98

seq1  ATCAACCAAGTGG-AAACAAGAAGAACTATTC-AAAGAATTAACCAAACG  147
      ||| || |||||| |||||||||||||||||| ||||||| |||||||||
seq2  ATC-ACGAAGTGGAAAACAAGAAGAACTATTCAAAAGAATCAACCAAACG  147

seq1  AGGAG--TTGGTTCTTTGAG-AAAATCAACAAGATAGATAAACCCTTAGC  194
      | |||   |||||| ||||| |||||||||||||||||||||||||||||
seq2  AAGAGATCTGGTTC-TTGAGAAAAATCAACAAGATAGATAAACCCTTAGC  196

seq1  TAGACTCACTA--AAGGGCACAGGGACAAAATCCTAATT-AACAAAATCA  241
       ||||||||||  | ||||||||| |||  ||||||||| ||||||||||
seq2  CAGACTCACTAAGAGGGGCACAGGTACAGCATCCTAATTAAACAAAATCA  246

seq1  GAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACC  291
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GAAATGAAAAGCGAGACATAACAACAGATCCTGAAGAAATCCAAAACACC  296

seq1  ATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGA  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGA  346

seq1  CGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGG  391
      |||| ||||||||||||| ||||||||||||||||||||||| |||||||
seq2  CGAAGTGGACAAATTTCTAGACAGATACCAGGTACCAAAGTTAAATCAGG  396

seq1  ATCAAGTTGACCATCTAAACAGTCCCATATCACCTAAAGAAATAGAAGCA  441
      |||||||| || ||||||||||||||||||| ||||||||||||||||||
seq2  ATCAAGTTAACAATCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCA  446

seq1  GTTATTAATAGTCTCCCAACCAAAAAAAGCCCA-GGACCAGATGGGTTTA  490
      || |||||||||||||||||||||||||| ||| || |||| ||||||||
seq2  GTCATTAATAGTCTCCCAACCAAAAAAAGTCCATGGTCCAGTTGGGTTTA  496

seq1  GTGCAGAGTTCTATCAGACCTTC  513
      |||||||||||||||||||||||
seq2  GTGCAGAGTTCTATCAGACCTTC  519

seq1: chr6_117095820_117096719
seq2: B6Ng01-105K19.g_70_974 (reverse)

seq1  AAAATCAATATGACAAGGAGGATGCTGAGTGCTAAACAGTTAGATCATGT  50
      ||| ||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AAATTCAATATGACAAGGAAGATGCTGAGTGCTAAACAGTTAGATCATGT  50

seq1  GCACAGCATGGAGAACAGGCAGGTAGATGTTTCACTTCCCCAGTAAGACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGCATGGAGAACAGGCAGGTAGATGTTTCACTTCCCCAGTAAGACA  100

seq1  GTGCTAACCTGCATGAGACTCCCTTCTGCTCC-TGACTTTCAGAATCTTC  149
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GTGCTAACCTGCATGAGACTCCCTTCTGCTCCTTGACTTTCAGAATCTTC  150

seq1  TCCTTTGTATCTCTGGACTGCAGTT-AACTAC-AAGTACCTG-AAAGCC-  195
      ||||||||||||||||||||||||| |||||| ||||||||| |||||| 
seq2  TCCTTTGTATCTCTGGACTGCAGTTAAACTACAAAGTACCTGAAAAGCCA  200

seq1  AAACCACAGAAGAGCAGGGAGTCTATGTACTCCTGTTTCAAAGAGCTACT  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCACAGAAGAGCAGGGAGTCTATGTACTCCTGTTTCAAAGAGCTACT  250

seq1  TCCTGGATCAGACAGACAGACCGGAGGTAAGGGAAGATGGTATTTTAAGT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGATCAGACAGACAGACCGGAGGTAAGGGAAGATGGTATTTTAAGT  300

seq1  AATTATTAATTTAAGTAATTATTAACAAGCTCCTACCCAGTAAGTTCTCA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTAATTTAAGTAATTATTAACAAGCTCCTACCCAGTAAGTTCTCA  350

seq1  TATGTACCAAGGTTCTCACTGCAAATAGAAATAATAACTTTCTACGTAGA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTACCAAGGTTCTCACTGCAAATAGAAATAATAACTTTCTACGTAGA  400

seq1  AGTAGGAACATCCTAGATTGTCTGTAAAAAAACTAACCATTAGCTGTAGA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGAACATCCTAGATTGTCTGTAAAAAAACTAACCATTAGCTGTAGA  450

seq1  CTGCAGCTGAGACTGTTGGGTTCGAAAAACCAAAACTCCCCAAGCAGTCA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGCTGAGACTGTTGGGTTCGAAAAACCAAAACTCCCCAAGCAGTCA  500

seq1  CAAGAGTCCAGCAAAGCAAGATCTTTATTTGAACTGGGCAGCAAAATCTG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGTCCAGCAAAGCAAGATCTTTATTTGAACTGGGCAGCAAAATCTG  550

seq1  ATCAGTCAGGGACAACAGCATAGACGCGGGAGCCTACTGTGTCTTTGTAC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTCAGGGACAACAGCATAGACGCGGGAGCCTACTGTGTCTTTGTAC  600

seq1  GTATGTCTTAGTAAGTATTTAAGCAGACAACAAAATGTTACTGTACACAG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTCTTAGTAAGTATTTAAGCAGACAACAAAATGTTACTGTACACAG  650

seq1  GCTGCTAGTGACTGATCAGAGCTGCAGAACAGACTCGGGAGCTGAACTGC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTAGTGACTGATCAGAGCTGCAGAACAGACTCGGGAGCTGAACTGC  700

seq1  AACCACAAAGAGAAGTTGTACAGCACTTTTAAGGGATGGAACCCCTAAGC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACAAAGAGAAGTTGTACAGCACTTTTAAGGGATGGAACCCCTAAGC  750

seq1  AAGAGGGAGCAGGGTGGGCTGCAGCATCGTCCAATCATATGTTGACACAA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGGAGCAGGGTGGGCTGCAGCATCGTCCAATCATATGTTGACACAA  800

seq1  GGAAATAAATGTTGGTGACTAAGCCTTATCCAGGTCACCTGGTTTCAGGG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATAAATGTTGGTGACTAAGCCTTATCCAGGTCACCTGGTTTCAGGG  850

seq1  TCCTTGATTCAGCTTTTGCAGTCAGGTCCCCTAGTGGACTTCTGGCCTGG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGATTCAGCTTTTGCAGTCAGGTCCCCTAGTGGACTTCTGGCCTGG  900

seq1  AATTC  900
      |||||
seq2  AATTC  905