BAC Information

Click to search

BAC

Clone NameB6Ng01-105M01
Chromosome6 (Build37)
Map Location 14,968,348 - 15,121,528
singlet/doubletdoublet
Overlap geneFoxp2
Upstream geneLOC100040513, LOC667797, Ppp1r3a, LOC100040568
Downstream geneMdfic
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-105M01.bB6Ng01-105M01.g
ACCDH913687DH913688
length1,0671,131
definitionDH913687|Mus musculus domesticus DNA, BAC clone: B6Ng01-105M01, 5' end.DH913688|Mus musculus domesticus DNA, BAC clone: B6Ng01-105M01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(14,968,348 - 14,969,420)(15,120,399 - 15,121,528)
sequence
gaattcctggaatttctgctgatcaactacttgcatcctatctggtttcc
aagactaaattgcagagtctctgtcaaataaactttattttctcatttca
tattaatttataagcaatgattactaaacagatagtgcaggtaaaattct
tttttttattattattagatattttctttatttacatttcaaatgttatc
cctgttcctggtctccctctgacagcccccttcccttatctcctgtcccc
tcccccgctcaccaacccacccaattctgctttctggccctggcattccc
ctatgctgggccacagaaccttcacaggacaaatggcctctcctcccatt
gatgaccaactaggccatcctctgatgcatatgtagctggagccatgagt
cccaccatgtgtttttattggttggtggtttagtccctgggacctctggg
gggtgctggctagttcatattgttgttcctcctgtggagctgtaaactcc
ttcaactccttgggtcctttctctgactccttcattggggactctgtgct
cagtccaatggatgtctgtatctggtttccttctttgtccctcctaggct
cttccttccttaatttatagaattgtgtacagtccggtggaaagtttctg
aatcaaccgttccttaaagtaataaaatctcactatattcaacttattaa
aagaaatcatgctggcttaggatctttaagatttttagccatgatgatta
accctgtgtctctaggtgtgtagcaaaatagctttaccatctttcaatag
agccattttccatagtaccaggtttttaacatatagatatttggagacat
ttaagtgccaaactattacacgttagtttagaagttcaagaacaaatttt
atgtgtgacatcttttgaataagacacaacctatcatttggcttgcaaac
tttagagtatatttacttttctattatttttttctgctctgactcaactt
ttagttcattgccctattcctagttctttgcctagtgccactgggaaata
acctccccaatttaaaa
gaattccaaatgaggaagtgtcttcccaaaggtgttaagtaagaaatttt
gaatcaatagatgctaaggattgtgaacatgaagaaaaaggagtagaggc
aaaaggaaattgggcgaaacgcgctgcaggcttttgtacagtaaaatgcg
tttgagcaggtatagctttcaagtcagcttattattacctggcacacagt
atgtcatatacaaatacctattcaaagaagtgttgaatgaagtctagtgt
taacttcagcaggtaattatgacaagtaacacggatgttcacatgttcca
gatacaaatcctttgaggtgaggactatagagacctgttccatgttcaac
acttcaaattcactcaaagtcgttcattatgattgtgtgtgcatgctggc
atgttgcatgcaagtgtgtgtacacacgcatgtgtacatatccagactgt
acttgtagagatctgtgtacatatccggattgtacttgtagagatctgat
gacaactttgcaggaatcgattttctcaacatgatagtttcctgagatga
aactggggctgtcaagtttgtgtgaaaagcacattttctttgattggtgg
tttagttccaaggagctaacacatggtggaacttgtggctctagctgtat
atcaagcagagaatggcctagactgttatcaatgggaggagaggtccttg
ggcctgtgaaggttctatgctccagtagaggggaatgccagaaccaggaa
tgtctaggttggggagcacgaggaggggggacatcagtagggaagaggat
tgggaacgacatcatcgtttcagccctagcgcttcaagtcaatacaaatt
atgcctaggacacaagtctatgttaaagtttgcaataaggtaagacatga
aaaaaataagcaagagttttggtgcaaactttggtaaagaatattgcatt
gaaatcttaatggaaaattttataaaataatagtaaaacatattcatttg
gtttctttaaggtcttcacatttttagacgggaacaaattattcttccat
caaatcgaggtttgtgtggcccgaaccttccttggtttgtaacccctctg
aaaaaggttgctttctgcaagagccctgctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_14968348_14969420
seq2: B6Ng01-105M01.b_43_1109

seq1  GAATTCCTGGAATTTCTGCTGATCAACTACTTGCATCCTATCTGGTTTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGAATTTCTGCTGATCAACTACTTGCATCCTATCTGGTTTCC  50

seq1  AAGACTAAATTGCAGAGTCTCTGTCAAATAAACTTTATTTTCTCATTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTAAATTGCAGAGTCTCTGTCAAATAAACTTTATTTTCTCATTTCA  100

seq1  TATTAATTTATAAGCAATGATTACTAAACAGATAGTGCAGGTAAAATTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAATTTATAAGCAATGATTACTAAACAGATAGTGCAGGTAAAATTCT  150

seq1  TTTTTTTATTATTATTAGATATTTTCTTTATTTACATTTCAAATGTTATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTATTATTATTAGATATTTTCTTTATTTACATTTCAAATGTTATC  200

seq1  CCTGTTCCTGGTCTCCCTCTGACAGCCCCCTTCCCTTATCTCCTGTCCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTCCTGGTCTCCCTCTGACAGCCCCCTTCCCTTATCTCCTGTCCCC  250

seq1  TCCCCCGCTCACCAACCCACCCAATTCTGCTTTCTGGCCCTGGCATTCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCGCTCACCAACCCACCCAATTCTGCTTTCTGGCCCTGGCATTCCC  300

seq1  CTATGCTGGGCCACAGAACCTTCACAGGACAAATGGCCTCTCCTCCCATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGCTGGGCCACAGAACCTTCACAGGACAAATGGCCTCTCCTCCCATT  350

seq1  GATGACCAACTAGGCCATCCTCTGATGCATATGTAGCTGGAGCCATGAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGACCAACTAGGCCATCCTCTGATGCATATGTAGCTGGAGCCATGAGT  400

seq1  CCCACCATGTGTTTTTATTGGTTGGTGGTTTAGTCCCTGGGACCTCTGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCATGTGTTTTTATTGGTTGGTGGTTTAGTCCCTGGGACCTCTGGG  450

seq1  GGGTGCTGGCTAGTTCATATTGTTGTTCCTCCTGTGGAGCTGTAAACTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGCTGGCTAGTTCATATTGTTGTTCCTCCTGTGGAGCTGTAAACTCC  500

seq1  TTCAACTCCTTGGGTCCTTTCTCTGACTCCTTCATTGGGGACTCTGTGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACTCCTTGGGTCCTTTCTCTGACTCCTTCATTGGGGACTCTGTGCT  550

seq1  CAGTCCAATGGATGTCTGTATCTGGTTTCCTTCTTTGTCCCTCCTAGGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCAATGGATGTCTGTATCTGGTTTCCTTCTTTGTCCCTCCTAGGCT  600

seq1  CTTCCTTCCTTAATTTATAGAATTGTGTACAGTCCGGTGGAAAGTTTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTCCTTAATTTATAGAATTGTGTACAGTCCGGTGGAAAGTTTCTG  650

seq1  AATCAACCGTTCCTTAAAGTAATAAAATCTCACTATATTCAACTTATTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAACCGTTCCTTAAAGTAATAAAATCTCACTATATTCAACTTATTAA  700

seq1  AAGAAATCATGCTGGCTTAGGATCTTTAAGATTTTTAGCCATGATGATTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATCATGCTGGCTTAGGATCTTTAAGATTTTTAGCCATGATGATTA  750

seq1  ACCCTGTGTCTCTAGGTGTGTAGCAAAATAGCTTTACCATCTTTCAATAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGTGTCTCTAGGTGTGTAGCAAAATAGCTTTACCATCTTTCAATAG  800

seq1  AGCCATTTTCCATAGTACCAGGTTTTTAACATATAGATATTTGGAGACAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATTTTCCATAGTACCAGGTTTTTAACATATAGATATTTGGAGACAT  850

seq1  TTAAGTGCCAAACTATTACACGTTAGTTTAGAAGTTCAAGAACAAATTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTGCCAAACTATTACACGTTAGTTTAGAAGTTCAAGAACAAATTTT  900

seq1  ATGTGTGACATCTTTTGAATAAGACACAACCTATCATTTGGCTTGCAAAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGACATCTTTTGAATAAGACACAACCTATCATTTGGCTTGCAAAC  950

seq1  TTTAGGAGTATATTTACTTTTCTATTATTTTTTTCTGCTCTGACTTCCAA  1000
      |||| ||||||||||||||||||||||||||||||||||||||||  |||
seq2  TTTA-GAGTATATTTACTTTTCTATTATTTTTTTCTGCTCTGACT--CAA  997

seq1  CTTTTTAGTTCATTGCCCCTATTCCTAGTTCTTTGCCCTAGTGCCACT-G  1049
      | ||||||||||||| ||||||||||||||||||| |||||||||||| |
seq2  C-TTTTAGTTCATTG-CCCTATTCCTAGTTCTTTG-CCTAGTGCCACTGG  1044

seq1  GAAATACACTTCCCCAATTTAAAA  1073
      |||||| || ||||||||||||||
seq2  GAAATA-ACCTCCCCAATTTAAAA  1067

seq1: chr6_15120399_15121528
seq2: B6Ng01-105M01.g_68_1198 (reverse)

seq1  GAGCAGGGCTC-TGCTGAAAGCAAACTTTATCAAGGAGTTTACAAAACAA  49
      ||||||||||| ||| |||||||| |||| |||  | | ||||||| |||
seq2  GAGCAGGGCTCTTGCAGAAAGCAACCTTTTTCAGAGGGGTTACAAACCAA  50

seq1  -GAAGGTTCAGAGCCCAACAAAACTTCGA-TTGATGGAAGAATAA-TTGT  96
       |||||||| | |||  || |||| |||| ||||||||||||||| ||||
seq2  GGAAGGTTC-GGGCCACAC-AAACCTCGATTTGATGGAAGAATAATTTGT  98

seq1  TACCGATTCTAAAAATGTGAAGAACTATAAGAAAACACATGAATTATG-T  145
      | |||  |||||||||||||||| ||  |||||| || ||||| |||| |
seq2  TCCCG--TCTAAAAATGTGAAGACCTTAAAGAAACCAAATGAA-TATGTT  145

seq1  ATACTATTATTTAATAAAATTTTCCATTAAGATTTCAATGC-ATATTCTT  194
       ||||||||||| |||||||||||||||||||||||||||| ||||||||
seq2  TTACTATTATTTTATAAAATTTTCCATTAAGATTTCAATGCAATATTCTT  195

seq1  TACCAAAGTTTGCACCAAAACTCTTGCTTATTTTTTTCATGTCTTACCTT  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAAAGTTTGCACCAAAACTCTTGCTTATTTTTTTCATGTCTTACCTT  245

seq1  ATTGCAAACTTTAACATAGACTTGTGTCCTAGGCATAATTTGTATTGACT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCAAACTTTAACATAGACTTGTGTCCTAGGCATAATTTGTATTGACT  295

seq1  TGAAGCGCTAGGGCTGAAACGATGATGTCGTTCCCAATCCTCTTCCCTAC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCGCTAGGGCTGAAACGATGATGTCGTTCCCAATCCTCTTCCCTAC  345

seq1  TGATGTCCCCCCTCCTCGTGCTCCCCAACCTAGACATTCCTGGTTCTGGC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTCCCCCCTCCTCGTGCTCCCCAACCTAGACATTCCTGGTTCTGGC  395

seq1  ATTCCCCTCTACTGGAGCATAGAACCTTCACAGGCCCAAGGACCTCTCCT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCCTCTACTGGAGCATAGAACCTTCACAGGCCCAAGGACCTCTCCT  445

seq1  CCCATTGATAACAGTCTAGGCCATTCTCTGCTTGATATACAGCTAGAGCC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTGATAACAGTCTAGGCCATTCTCTGCTTGATATACAGCTAGAGCC  495

seq1  ACAAGTTCCACCATGTGTTAGCTCCTTGGAACTAAACCACCAATCAAAGA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTTCCACCATGTGTTAGCTCCTTGGAACTAAACCACCAATCAAAGA  545

seq1  AAATGTGCTTTTCACACAAACTTGACAGCCCCAGTTTCATCTCAGGAAAC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTGCTTTTCACACAAACTTGACAGCCCCAGTTTCATCTCAGGAAAC  595

seq1  TATCATGTTGAGAAAATCGATTCCTGCAAAGTTGTCATCAGATCTCTACA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATGTTGAGAAAATCGATTCCTGCAAAGTTGTCATCAGATCTCTACA  645

seq1  AGTACAATCCGGATATGTACACAGATCTCTACAAGTACAGTCTGGATATG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACAATCCGGATATGTACACAGATCTCTACAAGTACAGTCTGGATATG  695

seq1  TACACATGCGTGTGTACACACACTTGCATGCAACATGCCAGCATGCACAC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACATGCGTGTGTACACACACTTGCATGCAACATGCCAGCATGCACAC  745

seq1  ACAATCATAATGAACGACTTTGAGTGAATTTGAAGTGTTGAACATGGAAC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCATAATGAACGACTTTGAGTGAATTTGAAGTGTTGAACATGGAAC  795

seq1  AGGTCTCTATAGTCCTCACCTCAAAGGATTTGTATCTGGAACATGTGAAC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTCTATAGTCCTCACCTCAAAGGATTTGTATCTGGAACATGTGAAC  845

seq1  ATCCGTGTTACTTGTCATAATTACCTGCTGAAGTTAACACTAGACTTCAT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCGTGTTACTTGTCATAATTACCTGCTGAAGTTAACACTAGACTTCAT  895

seq1  TCAACACTTCTTTGAATAGGTATTTGTATATGACATACTGTGTGCCAGGT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACACTTCTTTGAATAGGTATTTGTATATGACATACTGTGTGCCAGGT  945

seq1  AATAATAAGCTGACTTGAAAGCTATACCTGCTCAAACGCATTTTACTGTA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATAAGCTGACTTGAAAGCTATACCTGCTCAAACGCATTTTACTGTA  995

seq1  CAAAAGCCTGCAGCGCGTTTCGCCCAATTTCCTTTTGCCTCTACTCCTTT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGCCTGCAGCGCGTTTCGCCCAATTTCCTTTTGCCTCTACTCCTTT  1045

seq1  TTCTTCATGTTCACAATCCTTAGCATCTATTGATTCAAAATTTCTTACTT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCATGTTCACAATCCTTAGCATCTATTGATTCAAAATTTCTTACTT  1095

seq1  AACACCTTTGGGAAGACACTTCCTCATTTGGAATTC  1130
      ||||||||||||||||||||||||||||||||||||
seq2  AACACCTTTGGGAAGACACTTCCTCATTTGGAATTC  1131