BAC Information

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BAC

Clone NameB6Ng01-105P01
Chromosome6 (Build37)
Map Location 101,185,922 - 101,289,160
singlet/doubletdoublet
Overlap genePdzrn3
Upstream geneRybp, Shq1, LOC625221, BC049816, Ppp4r2, EG545870, LOC100043321
Downstream geneEG666084, Cntn3, EG666123
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-105P01.bB6Ng01-105P01.g
ACCDH913826DH913827
length800814
definitionDH913826|Mus musculus domesticus DNA, BAC clone: B6Ng01-105P01, 5' end.DH913827|Mus musculus domesticus DNA, BAC clone: B6Ng01-105P01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,185,922 - 101,186,721)(101,288,352 - 101,289,160)
sequence
gaattcatctaaaggcagacacagctgttctggacaaaccacaggtgatg
gctgttaccccaaccaaggccctcaatacagcctcaatgggtccctgcaa
cagaatcactcgagccatatatgccattcttggtacctgacatttagcaa
ctaggaggcataataattggtggttgtctgaagccactaggggctgcaac
agcttactatgcagcaatagataaatgatataatggtcatacatgtctga
aaagctaaaaccatgaacttaaccctaacctagctgactgtagggcccac
aacgatactctgcctgcttagtgatgttaattcactcctttctccctctt
cataagggcaagcacactgtaatcccgctcccggtactgccttgctaggg
actttcagaagtagctatgctctttatcagtctgtcagtcaccaaagaaa
aggtcaggggtagcccgcttattctccacgcagatgggagaaatcccagc
atgtagcaggtgtgccgtcttctcgccttgatcattttaggagggctcta
ttacacaggctgcctctgtacagcaaacagctccaataagcaaatataat
cacatttcctaattaacttatttattaaaaaaggtggagcagattcagct
caacaaataccatctcccaccaagaggttcacacattagagcaaatcaca
gaataataagatcaccatcatcatcatgtattctgtcttcatttaaaaac
tgactctggtcaggagacggagaaggaggaggaggaggaggaggaggagg

gaattctcttcaatgcaagctcagcttccgctgtcactgcagaattttca
tacacgttccgagaaacaagaccattgccggtgtcacttaattaaaccga
gttctcagtaaagtgatgtatcaacagtggaaagtgagttcaggggccag
ggatgcagttgagagcattaagcgagaagtttgagaaagttctccatggc
ttccagctaccatacccaacacaggatggattcagtgagcagtgatgtta
aatgtcagctgcaataaagagacctggtgtcaccttcttccttctgtcta
ctacgatgtttgagatttctgttctgtgggataaaaagtaatggcacgta
caggaatcgcatcatagactgttaactagaatgcgaggtccatggaaaga
cgaagcagaaaaggcctcgcaaatgttttcagacttgtttcctagcagca
tttgctaacagaaactttacaacttgaatccctatgcttccgaataataa
gcctaaaagagaacaacgatataatctaatcactcctgtatatacctcgg
gcacccatctgcttgcaggtttttgtggggattggggaggtggaataaag
ctgtcttaaatgataaaatcactagaaaaggtaaaattgtttgcatatcg
ttgtctctttgagacttacagataaacttttcagatgatcttctggtcgt
ttatggtgacacctcagtgtcagaaatggaaaagatgctgggcgctcctc
tacctaatcagccccgcttgccatcgttcatgtctgaagccaagtgtgcc
aaatgtgggctttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_101185922_101186721
seq2: B6Ng01-105P01.b_41_840

seq1  GAATTCATCTAAAGGCAGACACAGCTGTTCTGGACAAACCACAGGTGATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTAAAGGCAGACACAGCTGTTCTGGACAAACCACAGGTGATG  50

seq1  GCTGTTACCCCAACCAAGGCCCTCAATACAGCCTCAATGGGTCCCTGCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTACCCCAACCAAGGCCCTCAATACAGCCTCAATGGGTCCCTGCAA  100

seq1  CAGAATCACTCGAGCCATATATGCCATTCTTGGTACCTGACATTTAGCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATCACTCGAGCCATATATGCCATTCTTGGTACCTGACATTTAGCAA  150

seq1  CTAGGAGGCATAATAATTGGTGGTTGTCTGAAGCCACTAGGGGCTGCAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGAGGCATAATAATTGGTGGTTGTCTGAAGCCACTAGGGGCTGCAAC  200

seq1  AGCTTACTATGCAGCAATAGATAAATGATATAATGGTCATACATGTCTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTACTATGCAGCAATAGATAAATGATATAATGGTCATACATGTCTGA  250

seq1  AAAGCTAAAACCATGAACTTAACCCTAACCTAGCTGACTGTAGGGCCCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTAAAACCATGAACTTAACCCTAACCTAGCTGACTGTAGGGCCCAC  300

seq1  AACGATACTCTGCCTGCTTAGTGATGTTAATTCACTCCTTTCTCCCTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGATACTCTGCCTGCTTAGTGATGTTAATTCACTCCTTTCTCCCTCTT  350

seq1  CATAAGGGCAAGCACACTGTAATCCCGCTCCCGGTACTGCCTTGCTAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGGGCAAGCACACTGTAATCCCGCTCCCGGTACTGCCTTGCTAGGG  400

seq1  ACTTTCAGAAGTAGCTATGCTCTTTATCAGTCTGTCAGTCACCAAAGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCAGAAGTAGCTATGCTCTTTATCAGTCTGTCAGTCACCAAAGAAA  450

seq1  AGGTCAGGGGTAGCCCGCTTATTCTCCACGCAGATGGGAGAAATCCCAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCAGGGGTAGCCCGCTTATTCTCCACGCAGATGGGAGAAATCCCAGC  500

seq1  ATGTAGCAGGTGTGCCGTCTTCTCGCCTTGATCATTTTAGGAGGGCTCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGCAGGTGTGCCGTCTTCTCGCCTTGATCATTTTAGGAGGGCTCTA  550

seq1  TTACACAGGCTGCCTCTGTACAGCAAACAGCTCCAATAAGCAAATATAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACAGGCTGCCTCTGTACAGCAAACAGCTCCAATAAGCAAATATAAT  600

seq1  CACATTTCCTAATTAACTTATTTATTAAAAAAGGTGGAGCAGATTCAGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTTCCTAATTAACTTATTTATTAAAAAAGGTGGAGCAGATTCAGCT  650

seq1  CAACAAATACCATCTCCCACCAAGAGGTTCACACATTAGAGCAAATCACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAATACCATCTCCCACCAAGAGGTTCACACATTAGAGCAAATCACA  700

seq1  GAATAATAAGATCACCATCATCATCATGTATTCTGTCTTCATTTAAAAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAATAAGATCACCATCATCATCATGTATTCTGTCTTCATTTAAAAAC  750

seq1  TGACTCTGGTCAGGAGACGGAGAAGGAGGAGGAGGAGGAGGAGGAGGAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCTGGTCAGGAGACGGAGAAGGAGGAGGAGGAGGAGGAGGAGGAGG  800

seq1: chr6_101288352_101289160
seq2: B6Ng01-105P01.g_66_879 (reverse)

seq1  AAAAGGCCACATTTGGCACACTTGGCTTCAG-CATGGACGATGGCAAGCG  49
      ||||| ||||||||||||||||||||||||| |||| |||||||||||||
seq2  AAAAGCCCACATTTGGCACACTTGGCTTCAGACATGAACGATGGCAAGCG  50

seq1  GGGCTGATTAGGTAGAGGAGCG-CCAGCATCTTTTCCATTTCTGACACTG  98
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GGGCTGATTAGGTAGAGGAGCGCCCAGCATCTTTTCCATTTCTGACACTG  100

seq1  AGGTGTCACCATAAACGACCAGAAGATCATCTGAAAAGTTTATCTGTAAG  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTCACCATAAACGACCAGAAGATCATCTGAAAAGTTTATCTGTAAG  150

seq1  TCTC-AAGAGACAACGATATGC-AACAATTTTACCTTTTCTAGTGATTTT  196
      |||| ||||||||||||||||| |||||||||||||||||||||||||||
seq2  TCTCAAAGAGACAACGATATGCAAACAATTTTACCTTTTCTAGTGATTTT  200

seq1  ATCA-TTAAGACAGCTTTATTCCACCTCCCCAATCCCCACAAAAACCTGC  245
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTTAAGACAGCTTTATTCCACCTCCCCAATCCCCACAAAAACCTGC  250

seq1  AAGCAGATGGGTGCCCGAGGTATATACAGGAGTGATTAGATTATATCGTT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGATGGGTGCCCGAGGTATATACAGGAGTGATTAGATTATATCGTT  300

seq1  GTTCTCTTTTAGGCTTATTATTCGGAAGCATAGGGATTCAAGTTGTAAAG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCTTTTAGGCTTATTATTCGGAAGCATAGGGATTCAAGTTGTAAAG  350

seq1  TTTCTGTTAGCAAATGCTGCTAGGAAACAAGTCTGAAAACATTTGCGAGG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTTAGCAAATGCTGCTAGGAAACAAGTCTGAAAACATTTGCGAGG  400

seq1  CCTTTTCTGCTTCGTCTTTCCATGGACCTCGCATTCTAGTTAACAGTCTA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTCTGCTTCGTCTTTCCATGGACCTCGCATTCTAGTTAACAGTCTA  450

seq1  TGATGCGATTCCTGTACGTGCCATTACTTTTTATCCCACAGAACAGAAAT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCGATTCCTGTACGTGCCATTACTTTTTATCCCACAGAACAGAAAT  500

seq1  CTCAAACATCGTAGTAGACAGAAGGAAGAAGGTGACACCAGGTCTCTTTA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAACATCGTAGTAGACAGAAGGAAGAAGGTGACACCAGGTCTCTTTA  550

seq1  TTGCAGCTGACATTTAACATCACTGCTCACTGAATCCATCCTGTGTTGGG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGCTGACATTTAACATCACTGCTCACTGAATCCATCCTGTGTTGGG  600

seq1  TATGGTAGCTGGAAGCCATGGAGAACTTTCTCAAACTTCTCGCTTAATGC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTAGCTGGAAGCCATGGAGAACTTTCTCAAACTTCTCGCTTAATGC  650

seq1  TCTCAACTGCATCCCTGGCCCCTGAACTCACTTTCCACTGTTGATACATC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAACTGCATCCCTGGCCCCTGAACTCACTTTCCACTGTTGATACATC  700

seq1  ACTTTACTGAGAACTCGGTTTAATTAAGTGACACCGGCAATGGTCTTGTT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTACTGAGAACTCGGTTTAATTAAGTGACACCGGCAATGGTCTTGTT  750

seq1  TCTCGGAACGTGTATGAAAATTCTGCAGTGACAGCGGAAGCTGAGCTTGC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGGAACGTGTATGAAAATTCTGCAGTGACAGCGGAAGCTGAGCTTGC  800

seq1  ATTGAAGAGAATTC  809
      ||||||||||||||
seq2  ATTGAAGAGAATTC  814