BAC Information

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BAC

Clone NameB6Ng01-106F01
Chromosome12 (Build37)6 (Build37)
Map Location 6,467,993 - 6,469,11818,835,963 - 18,836,455
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC435292, LOC100042095, LOC672098, LOC100043137, LOC238049
Downstream geneLOC100042118, LOC668380
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-106F01.bB6Ng01-106F01.g
ACCDH914090DH914091
length1,1141,014
definitionDH914090|Mus musculus domesticus DNA, BAC clone: B6Ng01-106F01, 5' end.DH914091|Mus musculus domesticus DNA, BAC clone: B6Ng01-106F01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(6,467,993 - 6,469,118)(18,835,963 - 18,836,455)
sequence
gaattcatggtgctatattgtctctaattaatctctagaactttcatctc
aacttagtccatgtgaatctgttgtgcaagcctgaatccgagttacagga
accatcatcctagttctatgtactcactgttaattataaagcacgcatca
ctggttcattccccaaatagccagtaaatccatcccctctacatatctac
tttctttgttttgaataaggtttctattacagtgtatacccccaccctaa
ccattagaatactctcttagctgaagaaaccaattcaagtaattgcttca
tataagtcaacttttctcagttctgaattgcatgctgtgtcatgtgactt
cctggctgctggctgaggactggcaactagtattaaatatggcaaaattg
acaagtgacaacgaatacaagagtattgttagcctctgtgactcttagcc
tctgtgactatttttgatctcatctttcttcctttccaacttttcatgct
tagcttctcaacttaaaattcctcctttttttcttttctagaatatcacc
tccatctagaacactgtcgataagtagtttaagatttccaagatccagtc
caaatggtcctgtctacaattccttctcatacagcatattgatcttcctc
taatttgttcccttttgatggtgttgaaattactttttccacacatacca
ccatccatagactataatgcattaatattctacaagataaaatgaaacac
actcatgtgcattcactcaaacaaatttaagctcaaaggtttatgtgata
aaatagattccttttggcatatattgcatgaatggttctactataataaa
tatgtgaaatttatggaaattagtactttactaattttagaatattatca
ctttcattatataaaattaattaaaagatggttctgtatctagaaggaac
aaatacttgattccaattccagcagaaatatttttaattttaatttattt
attttatttcttttaggcagtcatgtgaaccctagactttgttatgtggc
aaagttactgtaaattatattctttggccacttaccaatgtgaatatagc
taagaccaccatgt
gaattctcacctgaggaatactgaatggcagagaagcacctgaataccga
atggcagagaagcacctgaaaaaatgttcaacatccttaatcatcaggga
attgcaaatcaaaacaaccctgagattccacctcacaccagtcagaatgg
ctaagatcaaaaattcaggtgacagcagatgctggcgtggatgtggagaa
agaggaacactcttccactgttggtgggagtgcaggcttgtacaaccact
ctggaaatcagtctggcggttcctcagaaaactggacatagtactaccgg
aggatccagcaatacctctcctgggcatatatccagaagatgccccaact
ggtaagaaggacacatgctccactatgttcatagcagccttatttataat
agccagaagctggaaagaacctagatgcccctcaacagaggaatggatac
agaaaatgtggtacatctacacaatggagtactactcagctattaaaaag
aatgaatttatgaaattcctagccaaatggatggacctggagggcatcat
cctgagtgaggtaacacattcacaaagaaactcacacaatatgtactcac
tgataagtggatattagccccaaacctaggatacccaagatataagatat
aatttgctaaacacatgaaactcaataagaatgaagactgaagtgtggac
actatgcccctccttagatttgggaacaaaacacccatggaaggagttac
agagacaaagtttggagctgagatgaaaggatggaccatgtagagactgc
catatccagggatccaccccataatcagcatccaaacgctgacaccattg
catacaccagcaagattttatcgaaaggacccagatatagctgtctcttg
ggagactatgccggggcctagcaaacacagaagtggatgctcacagtcag
ctaatggatggatcatagggcctcccaatggaggagctagagaaagtagc
caaggagctaaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_6467993_6469118
seq2: B6Ng01-106F01.b_43_1156

seq1  GAATTCATGGTGCTATATTGTCTCTAATTAATCTCTAGAACTTTCATCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGGTGCTATATTGTCTCTAATTAATCTCTAGAACTTTCATCTC  50

seq1  AACTTAGTCCATGTGAATCTGTTGTGCAAGCCTGAATCCGAGTTACAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAGTCCATGTGAATCTGTTGTGCAAGCCTGAATCCGAGTTACAGGA  100

seq1  ACCATCATCCTAGTTCTATGTACTCACTGTTAATTATAAAGCACGCATCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCATCCTAGTTCTATGTACTCACTGTTAATTATAAAGCACGCATCA  150

seq1  CTGGTTCATTCCCCAAATAGCCAGTAAATCCATCCCCTCTACATATCTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTCATTCCCCAAATAGCCAGTAAATCCATCCCCTCTACATATCTAC  200

seq1  TTTCTTTGTTTTGAATAAGGTTTCTATTACAGTGTATACCCCCACCCTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTGTTTTGAATAAGGTTTCTATTACAGTGTATACCCCCACCCTAA  250

seq1  CCATTAGAATACTCTCTTAGCTGAAGAAACCAATTCAAGTAATTGCTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTAGAATACTCTCTTAGCTGAAGAAACCAATTCAAGTAATTGCTTCA  300

seq1  TATAAGTCAACTTTTCTCAGTTCTGAATTGCATGCTGTGTCATGTGACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGTCAACTTTTCTCAGTTCTGAATTGCATGCTGTGTCATGTGACTT  350

seq1  CCTGGCTGCTGGCTGAGGACTGGCAACTAGTATTAAATATGGCAAAATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCTGCTGGCTGAGGACTGGCAACTAGTATTAAATATGGCAAAATTG  400

seq1  ACAAGTGACAACGAATACAAGAGTATTGTTAGCCTCTGTGACTCTTAGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTGACAACGAATACAAGAGTATTGTTAGCCTCTGTGACTCTTAGCC  450

seq1  TCTGTGACTATTTTTGATCTCATCTTTCTTCCTTTCCAACTTTTCATGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGACTATTTTTGATCTCATCTTTCTTCCTTTCCAACTTTTCATGCT  500

seq1  TAGCTTCTCAACTTAAAATTCCTCCTTTTTTTCTTTTCTAGAATATCACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTCTCAACTTAAAATTCCTCCTTTTTTTCTTTTCTAGAATATCACC  550

seq1  TCCATCTAGAACACTGTCGATAAGTAGTTTAAGATTTCCAAGATCCAGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCTAGAACACTGTCGATAAGTAGTTTAAGATTTCCAAGATCCAGTC  600

seq1  CAAATGGTCCTGTCTACAATTCCTTCTCATACAGCATATTGATCTTCCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGGTCCTGTCTACAATTCCTTCTCATACAGCATATTGATCTTCCTC  650

seq1  TAATTTGTTCCCTTTTGATGGTGTTGAAATTACTTTTTCCACACATACCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTGTTCCCTTTTGATGGTGTTGAAATTACTTTTTCCACACATACCA  700

seq1  CCATCCATAGACTATAATGCATTAATATTCTACAAGATAAAATGAAACAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCATAGACTATAATGCATTAATATTCTACAAGATAAAATGAAACAC  750

seq1  ACTCATGTGCATTCACTC-AACAAATTTAAGCTCAAAGGTTTATGTGATA  799
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ACTCATGTGCATTCACTCAAACAAATTTAAGCTCAAAGGTTTATGTGATA  800

seq1  AAATAGATTCCTTTTGGCATATATTGCATGAATGGTTCTACTATAATAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGATTCCTTTTGGCATATATTGCATGAATGGTTCTACTATAATAAA  850

seq1  TATGTG-AATTTATGGAAATTAGTACTTTACTAATTTTAGAATATTATCA  898
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGAAATTTATGGAAATTAGTACTTTACTAATTTTAGAATATTATCA  900

seq1  CTTTCATTATATAAAATTAATTAAAAGATGGTTCTGTATCTAGAAGGAAC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCATTATATAAAATTAATTAAAAGATGGTTCTGTATCTAGAAGGAAC  950

seq1  AAATACTTGATTCAAATTCCAGCAGAAATATTTTTAATTTTAATTTAATT  998
      ||||||||||||| |||||||||||||||||||||||||||||||| |||
seq2  AAATACTTGATTCCAATTCCAGCAGAAATATTTTTAATTTTAATTT-ATT  999

seq1  TATTTTATTTC-TTTAGGCAAGGTCATGTGAACCCTAGACTTTGTTATGT  1047
      ||||||||||| ||||||||  ||||||||||||||||||||||||||||
seq2  TATTTTATTTCTTTTAGGCA--GTCATGTGAACCCTAGACTTTGTTATGT  1047

seq1  GGGCAAAAGTTACTGTAAATTTATTATCCTTTGGCCCCAACTTACCAAAT  1097
      ||   ||||||||||||||||   ||| ||||||||   ||||||| |||
seq2  GG--CAAAGTTACTGTAAATT--ATATTCTTTGGCC---ACTTACC-AAT  1089

seq1  GTTGAAATAATAGCTAAGACACACCATGT  1126
      | ||||   ||||||||||| ||||||||
seq2  G-TGAA--TATAGCTAAGAC-CACCATGT  1114

seq1: chr6_18835963_18836455
seq2: B6Ng01-106F01.g_64_582

seq1  GAATTCTCACCTGAG--------------------------GAATACCGA  24
      |||||||||||||||                          |||||||||
seq2  GAATTCTCACCTGAGGAATACTGAATGGCAGAGAAGCACCTGAATACCGA  50

seq1  ATGGCAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGA  74
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGA  100

seq1  AATGGAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGG  124
      | || |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGG  150

seq1  CTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAA  174
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAA  200

seq1  AGAGGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACT  224
      |||||||||||| |||| ||||||||||| ||||||||||||||||||||
seq2  AGAGGAACACTCTTCCACTGTTGGTGGGAGTGCAGGCTTGTACAACCACT  250

seq1  CTGGAAATCCGTCTGGCGGTTGCTCAGAAAATTGGACATAGTACTACTGG  274
      ||||||||| ||||||||||| ||||||||| ||||||||||||||| ||
seq2  CTGGAAATCAGTCTGGCGGTTCCTCAGAAAACTGGACATAGTACTACCGG  300

seq1  AGGATCCAGCATTACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACT  324
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AGGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACT  350

seq1  GGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAAT  374
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAAT  400

seq1  AGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATAC  424
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AGCCAGAAGCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATAC  450

seq1  AGAAAATGTGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAAG  474
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AGAAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAG  500

seq1  AATGAATTTATGAAATTCC  493
      |||||||||||||||||||
seq2  AATGAATTTATGAAATTCC  519