BAC Information

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BAC

Clone NameB6Ng01-106I10
Chromosome6 (Build37)
Map Location 15,282,544 - 15,437,440
singlet/doubletdoublet
Overlap geneFoxp2
Upstream geneLOC667797, Ppp1r3a, LOC100040568
Downstream geneMdfic, LOC100041116
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-106I10.bB6Ng01-106I10.g
ACCDH914240DH914241
length1,2051,137
definitionDH914240|Mus musculus domesticus DNA, BAC clone: B6Ng01-106I10, 5' end.DH914241|Mus musculus domesticus DNA, BAC clone: B6Ng01-106I10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,282,544 - 15,283,778)(15,436,277 - 15,437,440)
sequence
gaattctcaactgaggaataatgaatggctgagaaacacctgaaaaaaat
gttcaacatccttaatcatcagggaaatgcaaatcaaaaccaccattgtt
aaattagtaagactgttttattatgataccactataagataaatgatcat
tcctattgatctttctctgacttgtacagtctttcacggctgattggtgt
tttttgcatgaagcatcaacaacttgtaattataggtagtctcctaaaca
gcaacaactgatatcttttttattacccaataatatctgttattatttca
caaacattggatgcagacaaatatatttttatcttcaaaatccatattcc
ttttctgtcttttgcttacttccttgtttatcctacttattaacctacac
atattataaaggtcaaactcagttactatctcaccttacccaactttcac
taacatggtaattaatttgatattatgtgtctatacttatttttggaagt
attctacttccacttaactcatgtttgtcaaatatgaatatcttgacaat
ccaggcaaacttttcaataaaatactaatcattacatacatatgataaat
ttagactgagaagatgtaaaacagtatttgggatttggaaatccatagat
ctgtaagagaaatttcaccattttactgtttgatgagaaataatttcatt
ggagatgtcttatgaggaagtcttttttttaagtagcttacataagggaa
gtctttgagaacatggaaataaaatttgaaattttgaatacttgtttaaa
aattgaattgaaagattctctaaacttttgaacaaagaagtggatatacc
atacccaaaccatcctgtttaaagacgtccttgggaaaaatgggaagata
ttgtttaaaaaaattgaagtctcggtgtccatgataaatgatattgtcaa
caaaaaatataccattaaaatgtcacaacatatttccactgagaggacat
ggtagaaataggtgcacatacagaagaagcataagttttgaacattaggg
aataatgaattgagatcactgaattggtacttggtgtttgctgactgtgt
gaactagtggggatctagcactcagaagaatagtagggtgatgtaggcag
tggggctggattggtaggttattggaaagaggaattctactcgccagctg
actga
gaattccagcacacaatgtcacctgctctgtaatctgattactttatgga
ggaattagtatgtatatttaatgtagaagggttttaatcttgatgaaaac
aatcctaaggaactctgatagggctgctcatatgtctggcagatatgcca
gtaacatgctaatagatgacagctgatttatgtatctggattcttttatt
tataaaaatagcaagtggactgatttttgatattaataatacaagtgaat
ccactttgattagacttctgtggagagctgtgcatatccggcattacaat
taaatcttgtgatgtggaatgggaatgacatgctaatgaagcaagccagt
gagcccgaaccaggagtgtccaacatcattatgggatatcttagatgaag
agtaattataagaggaacactgaaatgtcattaaaaatcttcactaagag
atttaacctactatttcatattagtgctggattttttcttttcttttctt
tctttctcttttttttctttcttccttccttttttttttttttttcttgg
tagcactgtagctgaacacaaagttctttttcagaatttacaggggaagg
tttttttttttttaggtaggtctggatttaagaaaagaaacaatctagta
tcttaatttaatttgctacatcaaaaattcaatggtagtatgtaattgaa
atctctttttaataatttcagatgaattagcaattaggacttgatccgat
ttccatgaaatttattaaaattgagggttggagcccttgaaaatttttta
ttcttttcactccattagcacagaacatctcgtctaagtgactctgtcag
ttagtatgtgctgtccttgtttatttatgaaaatttgtttcaaggaggtt
caaaagaggtaactaatgcatatttcatagatttgagtttataataatat
gaatcgaggcaacccttccagcttaactatccttcctttttttggaaaga
tgtgcttacactcacctttcatgaacagacgtctttggccagcttcccta
gacctacccttgtgtgatcctgtacctgacctcaatgaaaggaagcttct
tctgtcacttgcactgggactgttcgagaaacaggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_15282544_15283778
seq2: B6Ng01-106I10.b_45_1249

seq1  GAATTCTCAACTGAGGAATAATGAATGGCTGAGAAACACCTGAAAAAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAACTGAGGAATAATGAATGGCTGAGAAACACCTGAAAAAAAT  50

seq1  GTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACCACCATTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACCACCATTGTT  100

seq1  AAATTAGTAAGACTGTTTTATTATGATACCACTATAAGATAAATGATCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAGTAAGACTGTTTTATTATGATACCACTATAAGATAAATGATCAT  150

seq1  TCCTATTGATCTTTCTCTGACTTGTACAGTCTTTCACGGCTGATTGGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATTGATCTTTCTCTGACTTGTACAGTCTTTCACGGCTGATTGGTGT  200

seq1  TTTTTGCATGAAGCATCAACAACTTGTAATTATAGGTAGTCTCCTAAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGCATGAAGCATCAACAACTTGTAATTATAGGTAGTCTCCTAAACA  250

seq1  GCAACAACTGATATCTTTTTTATTACCCAATAATATCTGTTATTATTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACAACTGATATCTTTTTTATTACCCAATAATATCTGTTATTATTTCA  300

seq1  CAAACATTGGATGCAGACAAATATATTTTTATCTTCAAAATCCATATTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACATTGGATGCAGACAAATATATTTTTATCTTCAAAATCCATATTCC  350

seq1  TTTTCTGTCTTTTGCTTACTTCCTTGTTTATCCTACTTATTAACCTACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGTCTTTTGCTTACTTCCTTGTTTATCCTACTTATTAACCTACAC  400

seq1  ATATTATAAAGGTCAAACTCAGTTACTATCTCACCTTACCCAACTTTCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTATAAAGGTCAAACTCAGTTACTATCTCACCTTACCCAACTTTCAC  450

seq1  TAACATGGTAATTAATTTGATATTATGTGTCTATACTTATTTTTGGAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATGGTAATTAATTTGATATTATGTGTCTATACTTATTTTTGGAAGT  500

seq1  ATTCTACTTCCACTTAACTCATGTTTGTCAAATATGAATATCTTGACAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTACTTCCACTTAACTCATGTTTGTCAAATATGAATATCTTGACAAT  550

seq1  CCAGGCAAACTTTTCAATAAAATACTAATCATTACATACATATGATAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCAAACTTTTCAATAAAATACTAATCATTACATACATATGATAAAT  600

seq1  TTAGACTGAGAAGATGTAAAACAGTATTTGGGATTTGGAAATCCATAGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACTGAGAAGATGTAAAACAGTATTTGGGATTTGGAAATCCATAGAT  650

seq1  CTGTAAGAGAAATTTCACCATTTTACTGTTTGATGAGAAATAATTTCATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAGAGAAATTTCACCATTTTACTGTTTGATGAGAAATAATTTCATT  700

seq1  GGAGATGTCTTATGAGGAAGTCTTTTTTTTAAGTAGCTTACATAAGGGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATGTCTTATGAGGAAGTCTTTTTTTTAAGTAGCTTACATAAGGGAA  750

seq1  GTCTTTGAGAACATGGAAATAAAATTTGAAATTTTGAATACTTGTTTAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTGAGAACATGGAAATAAAATTTGAAATTTTGAATACTTGTTTAAA  800

seq1  AATTGAATTGAAAGATTCTCTAAACTTTTGAACAAAGAAGTGGATATACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAATTGAAAGATTCTCTAAACTTTTGAACAAAGAAGTGGATATACC  850

seq1  ATACCCAAACCATCCTGTTTAAAGACGTCCTTGGGAAAAATGGGAAGATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCAAACCATCCTGTTTAAAGACGTCCTTGGGAAAAATGGGAAGATA  900

seq1  TTGTTTAAAAAAAATTGAAGTCTCGGTGTCCATGATAAATGATATTGTCA  950
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTT-AAAAAAATTGAAGTCTCGGTGTCCATGATAAATGATATTGTCA  949

seq1  AACAAAAAAATATAACCATTAAAAATGTCAACAACAATATTTCCACTGAG  1000
      |   ||||||||| |||||| |||||||| ||||| ||||||||||||||
seq2  A--CAAAAAATAT-ACCATT-AAAATGTC-ACAAC-ATATTTCCACTGAG  993

seq1  AAGGACATGGTAAGAAAATAAGGTGCACATACAGAAGAAGGCAATAAGGT  1050
       |||||||||| |||||   ||||||||||||||||||||   |||||  
seq2  -AGGACATGGT-AGAAA--TAGGTGCACATACAGAAGAAG--CATAAG--  1035

seq1  TTTTGAACATTAGGGAAATAAATGAAATTGAGATCACTGAAAATTGGTAC  1100
      |||||||||||||||||   |||| ||||||||||||||  |||||||||
seq2  TTTTGAACATTAGGGAA--TAATG-AATTGAGATCACTG--AATTGGTAC  1080

seq1  CTTGTGTTTGGCTGAC--TGTGAACTAGT-GAGATCTAGCACTCAGAAAG  1147
       | |||||| ||||||  ||||||||||| | |||||||||||||| |||
seq2  TTGGTGTTT-GCTGACTGTGTGAACTAGTGGGGATCTAGCACTCAG-AAG  1128

seq1  AATAGTAGGGTTGATGGTAGGCAGTGGGAGCTGGAATTGGTAAGTTTTAT  1197
      |||||||||| |||| |||||||||||| ||||| ||||||| |  ||||
seq2  AATAGTAGGG-TGAT-GTAGGCAGTGGG-GCTGG-ATTGGTAGG--TTAT  1172

seq1  TTGATAGAAGGATATTTCTACTCAGCCAGCTGAGCTGA  1235
      | || ||| |   | |||||||| ||||||||| ||||
seq2  TGGAAAGAGG---AATTCTACTC-GCCAGCTGA-CTGA  1205

seq1: chr6_15436277_15437440
seq2: B6Ng01-106I10.g_69_1205 (reverse)

seq1  TCCCTGTTTCATCTTCCCCTGTGTCTTCTTCGAACAGTGCCCAGTGGCCA  50
      ||||||||||                   ||||||||| |||||||  ||
seq2  TCCCTGTTTC-------------------TCGAACAGT-CCCAGTG--CA  28

seq1  GTTGACAGGAAGAAGTCTTCCTCTCATTGAGGTCAGGGGTACAGTGAATC  100
        ||||| ||||||| |||||| ||||||||||||  ||||||  | |||
seq2  AGTGACA-GAAGAAG-CTTCCTTTCATTGAGGTCA--GGTACA--GGATC  72

seq1  ACACAAGGGTAGGGCCCTAGGGAAAGCTGCGCAGAGGACGTCTGGTCATG  150
      |||||||||||||   |||||| |||||| ||  | |||||||| |||||
seq2  ACACAAGGGTAGG--TCTAGGG-AAGCTG-GCCAAAGACGTCTGTTCATG  118

seq1  -AAGGTGAGTGT-AGCACATCTTTTC-CAAAAAGGGAGGATAGTTAAGCT  197
       ||||||||||| ||||||||||| |  ||||||| ||||||||||||||
seq2  AAAGGTGAGTGTAAGCACATCTTTCCAAAAAAAGGAAGGATAGTTAAGCT  168

seq1  GTGAGGGTTGCCTCGATTCATA-TATTATAAACTCAAATCTATG-AATAT  245
      |  ||||||||||||||||||| ||||||||||||||||||||| |||||
seq2  GGAAGGGTTGCCTCGATTCATATTATTATAAACTCAAATCTATGAAATAT  218

seq1  GCATTAGTTACCTCTTTTGAACCTCCTTGAAACAAATTCTCATAAATAAA  295
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GCATTAGTTACCTCTTTTGAACCTCCTTGAAACAAATTTTCATAAATAAA  268

seq1  CAAGGACAGCACATACTAACTGACAGAGTCACTTAGACGAGATGTTCTGT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGACAGCACATACTAACTGACAGAGTCACTTAGACGAGATGTTCTGT  318

seq1  GCTAATGGAGTGAAAAGAATAAAAAATTTTCAAGGGCTCCAACCCTCAAT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAATGGAGTGAAAAGAATAAAAAATTTTCAAGGGCTCCAACCCTCAAT  368

seq1  TTTAATAAATTTCATGGAAATCGGATCAAGTCCTAATTGCTAATTCATCT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATAAATTTCATGGAAATCGGATCAAGTCCTAATTGCTAATTCATCT  418

seq1  GAAATTATTAAAAAGAGATTTCAATTACATACTACCATTGAATTTTTGAT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTATTAAAAAGAGATTTCAATTACATACTACCATTGAATTTTTGAT  468

seq1  GTAGCAAATTAAATTAAGATACTAGATTGTTTCTTTTCTTAAATCCAGAC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCAAATTAAATTAAGATACTAGATTGTTTCTTTTCTTAAATCCAGAC  518

seq1  CTACCTAAAAAAAAAAAAACCTTCCCCTGTAAATTCTGAAAAAGAACTTT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTAAAAAAAAAAAAACCTTCCCCTGTAAATTCTGAAAAAGAACTTT  568

seq1  GTGTTCAGCTACAGTGCTACCAAGAAAAAAAAAAAAAAAAGGAAGGAAGA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCAGCTACAGTGCTACCAAGAAAAAAAAAAAAAAAAGGAAGGAAGA  618

seq1  AAGAAAAAAAAGAGAAAGAAAGAAAAGAAAAGAAAAAATCCAGCACTAAT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAAAAAGAGAAAGAAAGAAAAGAAAAGAAAAAATCCAGCACTAAT  668

seq1  ATGAAATAGTAGGTTAAATCTCTTAGTGAAGATTTTTAATGACATTTCAG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATAGTAGGTTAAATCTCTTAGTGAAGATTTTTAATGACATTTCAG  718

seq1  TGTTCCTCTTATAATTACTCTTCATCTAAGATATCCCATAATGATGTTGG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCTCTTATAATTACTCTTCATCTAAGATATCCCATAATGATGTTGG  768

seq1  ACACTCCTGGTTCGGGCTCACTGGCTTGCTTCATTAGCATGTCATTCCCA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCCTGGTTCGGGCTCACTGGCTTGCTTCATTAGCATGTCATTCCCA  818

seq1  TTCCACATCACAAGATTTAATTGTAATGCCGGATATGCACAGCTCTCCAC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACATCACAAGATTTAATTGTAATGCCGGATATGCACAGCTCTCCAC  868

seq1  AGAAGTCTAATCAAAGTGGATTCACTTGTATTATTAATATCAAAAATCAG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTCTAATCAAAGTGGATTCACTTGTATTATTAATATCAAAAATCAG  918

seq1  TCCACTTGCTATTTTTATAAATAAAAGAATCCAGATACATAAATCAGCTG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTTGCTATTTTTATAAATAAAAGAATCCAGATACATAAATCAGCTG  968

seq1  TCATCTATTAGCATGTTACTGGCATATCTGCCAGACATATGAGCAGCCCT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTATTAGCATGTTACTGGCATATCTGCCAGACATATGAGCAGCCCT  1018

seq1  ATCAGAGTTCCTTAGGATTGTTTTCATCAAGATTAAAACCCTTCTACATT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAGTTCCTTAGGATTGTTTTCATCAAGATTAAAACCCTTCTACATT  1068

seq1  AAATATACATACTAATTCCTCCATAAAGTAATCAGATTACAGAGCAGGTG  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATACATACTAATTCCTCCATAAAGTAATCAGATTACAGAGCAGGTG  1118

seq1  ACATTGTGTGCTGGAATTC  1164
      |||||||||||||||||||
seq2  ACATTGTGTGCTGGAATTC  1137