BAC Information

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BAC

Clone NameB6Ng01-106L08
Chromosome6 (Build37)
Map Location 12,417,399 - 12,517,810
singlet/doubletdoublet
Overlap geneThsd7a
Upstream geneNdufa4, Phf14, LOC100040844, EG625347, LOC435879
Downstream geneLOC667735, LOC384350, Tmem106b, Gm467, Gm725, 1700016P04Rik, LOC100040478
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-106L08.bB6Ng01-106L08.g
ACCDH914369DH914370
length1,1911,026
definitionDH914369|Mus musculus domesticus DNA, BAC clone: B6Ng01-106L08, 5' end.DH914370|Mus musculus domesticus DNA, BAC clone: B6Ng01-106L08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,516,602 - 12,517,810)(12,417,399 - 12,418,421)
sequence
gaattcatgtgagagtaaaaacatatgacaatgggcaatgacagtgaaaa
agccactagtattcctactcatctcattatctaaaaatagatatcctaat
tataatagtaatataacttattaaagaaataagtttagaaaatttgtaca
actggagacacacaggatacattgaacaaaatgatgtttcactatttttt
taactttaaacaaaatcttattacacaaaggttgtcacataattggataa
ttctctacttggtacacaatcattcccaccctccacagaacttctaattt
ggtgacccagcactacagtcctgatgctaacagaacagtagagatgcctc
agtgatataaattgaaagcatgacagtgataatagggctcttgcacccag
catcaggattatacaaatgtcagtagtaaaccattatacattgtcaatgg
aaaccagtaactgagagttacagtgatcagccagccttctcttcagtcat
tttctcaggagttatcagtgaggaacctgccttgagcttactgtcacagt
tcattgataagggcaaagcactattctaggagttagaacatgccacctcc
cgtacctgttcccattgaacccattgcacacatttcagggtccttatttt
ctttagggatttctgtcactacagctttggctgcaattagcaaggaagcc
accccagcagcacccagtaaggcagttttgttttttgtttgtttggtttt
tttgttttgttgttttttgttttttgagacaaggtttttctgtgtagccc
tggctgtcctggagctcacttttgtagaccaggctagcctcgaactcaga
aatcctcctgcctctgcctcccaagtgctgggattaaaggtgtgcaccac
cactgcccagctcagtaaggcatttcttacaccttagttgaatcaatgat
tccattttccaccacgttcacaaatctccagcatggcgtcataaccaact
tctgagactctgcagaattttctcaactatgaaagtccttcaacacctgc
attcttagcattgtcattgcagggatttgagtatcctttatattctatag
ctattttctgatctcatattcaggctttattgattcaagttaggtgcaca
gaagcaaaaccaaccctcttagaacatgcttcgtctactgc
gaattcttcttactattgagcagcgaccgagccacaggaggaaacaattt
tgcttgctggaagaaagtaagagggaaggaattatgccggctgccagatg
ttgcagtgcctctaaggaggcactaggatgtttctgcatatgctgcagac
agcataaactgtcagaccatgggaccctggggttcaatgctcatacttca
gtgagatgcagagtcataggatttgagagtgagcaggacccttagagatg
atccatcaagagggcttagtctgtggcagtgagaatgtggctcaagaatt
gctgagcatacatagaggggtctcccaaatgggagtgcatttcttaggaa
gaatgtccaattcttatatcagataacacatcaggacatggtatcttact
aaacaaaaatgaaatgtaaagtacaagattttactatggttgatgaaaag
aactttgaggacaacaactctctactgggtcaggtacatctcgggatggg
aggagacgctgacttcagccctctgtgctatataataggccttttaatgg
gggtgggggtaggggcgcgaggctcagtaaataacatcactcagacagat
caaggaggaatgaaagagttctggagtcatgccaacaaccctttggctta
ttttacatttaatagtcaagggagtgaaacaatattacaaagaaaaattg
tcctctccttgttatttctgaatgtttgcttaattgtcctccttttgtta
tttctgaatgtttgcttcaaaacattctcctgcttgatgctagtttatct
gagcacacctcatctctttttactttcaaagttaaaaggactctctgctc
atccaccatgtgaatgggcaaagattatatatgttccagatacacatgat
gactactagattatcgttgtttttatgaaattgcatacaactgaagatta
attgttgttgatgaagtaaggtcaatcacagggagaataagatcaattgt
ttatttatttggaattctacttttta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_12516602_12517810
seq2: B6Ng01-106L08.b_44_1234 (reverse)

seq1  GCAGTAGACGAAGGCATTGTTCTAGGAGGGGTTGTGTCTGCTTCTGTGCA  50
      |||||||||||| ||| ||||||| || ||||||  | ||||||||||||
seq2  GCAGTAGACGAA-GCA-TGTTCTAAGA-GGGTTGGTTTTGCTTCTGTGCA  47

seq1  CCCTACCCTTGGATTCATTAAAGCCTGATAATGAAGATCAGAAAATAGGT  100
      ||  ||   | || ||| ||||||||||  ||| |||||||||||||| |
seq2  CCTAAC---TTGAATCAATAAAGCCTGAATATG-AGATCAGAAAATAGCT  93

seq1  ATAGAAATTATTAAAAGGATACTCAAAATCCCTGCAATGACAATTGCTAA  150
      ||||||  |||  ||||||||||| |||||||||||||||||| ||||||
seq2  ATAGAA--TAT--AAAGGATACTC-AAATCCCTGCAATGACAA-TGCTAA  137

seq1  GAATGCAGGTGTTGAAGGACCTTTCATAGTTGAGAAAATTCTGCAGAGTT  200
      ||||||||||||||||||| ||||||||||||||||||||||||||||| 
seq2  GAATGCAGGTGTTGAAGGA-CTTTCATAGTTGAGAAAATTCTGCAGAGT-  185

seq1  CCTCAGAAGTTGGTTATGACGCCATGCTTGGAGATTTTGTGAACGTGGTG  250
       |||||||||||||||||||||||||| |||||| |||||||||||||||
seq2  -CTCAGAAGTTGGTTATGACGCCATGC-TGGAGA-TTTGTGAACGTGGTG  232

seq1  GAAAATGGAATCATTGATTCAACTAAGGTTGTAAGAATTGCCTTACTGAG  300
      |||||||||||||||||||||||||||| |||||||| ||||||||||||
seq2  GAAAATGGAATCATTGATTCAACTAAGG-TGTAAGAAATGCCTTACTGAG  281

seq1  CTGGGCAGTGGTGGTGCACACCTTTAATCCCAGCACTTGGGAGGCAGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCAGTGGTGGTGCACACCTTTAATCCCAGCACTTGGGAGGCAGAGG  331

seq1  CAGGAGGATTTCTGAGTTCGAGGCTAGCCTGGTCTAC-AAAGTGAGCTCC  399
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CAGGAGGATTTCTGAGTTCGAGGCTAGCCTGGTCTACAAAAGTGAGCTCC  381

seq1  AGGACAGCCAGGGCTACACAGAAAAACCTTGTCTCAAAAAACAAAAAACA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAGCCAGGGCTACACAGAAAAACCTTGTCTCAAAAAACAAAAAACA  431

seq1  ACAAAACAAAAAAACCAAACAAACAAAAAACAAAACTGCCTTACTGGGTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACAAAAAAACCAAACAAACAAAAAACAAAACTGCCTTACTGGGTG  481

seq1  CTGCTGGGGTGGCTTCCTTGCTAATTGCAGCCAAAGCTGTAGTGACAGAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGGGGTGGCTTCCTTGCTAATTGCAGCCAAAGCTGTAGTGACAGAA  531

seq1  ATCCCTAAAGAAAATAAGGACCCTGAAATGTGTGCAATGGGTTCAATGGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTAAAGAAAATAAGGACCCTGAAATGTGTGCAATGGGTTCAATGGG  581

seq1  AACAGGTACGGGAGGTGGCATGTTCTAACTCCTAGAATAGTGCTTTGCCC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGTACGGGAGGTGGCATGTTCTAACTCCTAGAATAGTGCTTTGCCC  631

seq1  TTATCAATGAACTGTGACAGTAAGCTCAAGGCAGGTTCCTCACTGATAAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCAATGAACTGTGACAGTAAGCTCAAGGCAGGTTCCTCACTGATAAC  681

seq1  TCCTGAGAAAATGACTGAAGAGAAGGCTGGCTGATCACTGTAACTCTCAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAGAAAATGACTGAAGAGAAGGCTGGCTGATCACTGTAACTCTCAG  731

seq1  TTACTGGTTTCCATTGACAATGTATAATGGTTTACTACTGACATTTGTAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGGTTTCCATTGACAATGTATAATGGTTTACTACTGACATTTGTAT  781

seq1  AATCCTGATGCTGGGTGCAAGAGCCCTATTATCACTGTCATGCTTTCAAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTGATGCTGGGTGCAAGAGCCCTATTATCACTGTCATGCTTTCAAT  831

seq1  TTATATCACTGAGGCATCTCTACTGTTCTGTTAGCATCAGGACTGTAGTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATCACTGAGGCATCTCTACTGTTCTGTTAGCATCAGGACTGTAGTG  881

seq1  CTGGGTCACCAAATTAGAAGTTCTGTGGAGGGTGGGAATGATTGTGTACC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTCACCAAATTAGAAGTTCTGTGGAGGGTGGGAATGATTGTGTACC  931

seq1  AAGTAGAGAATTATCCAATTATGTGACAACCTTTGTGTAATAAGATTTTG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGAGAATTATCCAATTATGTGACAACCTTTGTGTAATAAGATTTTG  981

seq1  TTTAAAGTTAAAAAAATAGTGAAACATCATTTTGTTCAATGTATCCTGTG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGTTAAAAAAATAGTGAAACATCATTTTGTTCAATGTATCCTGTG  1031

seq1  TGTCTCCAGTTGTACAAATTTTCTAAACTTATTTCTTTAATAAGTTATAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCCAGTTGTACAAATTTTCTAAACTTATTTCTTTAATAAGTTATAT  1081

seq1  TACTATTATAATTAGGATATCTATTTTTAGATAATGAGATGAGTAGGAAT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATTATAATTAGGATATCTATTTTTAGATAATGAGATGAGTAGGAAT  1131

seq1  ACTAGTGGCTTTTTCACTGTCATTGCCCATTGTCATATGTTTTTACTCTC  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGTGGCTTTTTCACTGTCATTGCCCATTGTCATATGTTTTTACTCTC  1181

seq1  ACATGAATTC  1209
      ||||||||||
seq2  ACATGAATTC  1191

seq1: chr6_12417399_12418421
seq2: B6Ng01-106L08.g_68_1093

seq1  GAATTCTTCTTACTATTGAGCAGCGACCGAGCCACAGGAGGAAACAATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTTACTATTGAGCAGCGACCGAGCCACAGGAGGAAACAATTT  50

seq1  TGCTTGCTGGAAGAAAGTAAGAGGGAAGGAATTATGCCGGCTGCCAGATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGCTGGAAGAAAGTAAGAGGGAAGGAATTATGCCGGCTGCCAGATG  100

seq1  TTGCAGTGCCTCTAAGGAGGCACTAGGATGTTTCTGCATATGCTGCAGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGTGCCTCTAAGGAGGCACTAGGATGTTTCTGCATATGCTGCAGAC  150

seq1  AGCATAAACTGTCAGACCATGGGACCCTGGGGTTCAATGCTCATACTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATAAACTGTCAGACCATGGGACCCTGGGGTTCAATGCTCATACTTCA  200

seq1  GTGAGATGCAGAGTCATAGGATTTGAGAGTGAGCAGGACCCTTAGAGATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGATGCAGAGTCATAGGATTTGAGAGTGAGCAGGACCCTTAGAGATG  250

seq1  ATCCATCAAGAGGGCTTAGTCTGTGGCAGTGAGAATGTGGCTCAAGAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATCAAGAGGGCTTAGTCTGTGGCAGTGAGAATGTGGCTCAAGAATT  300

seq1  GCTGAGCATACATAGAGGGGTCTCCCAAATGGGAGTGCATTTCTTAGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGCATACATAGAGGGGTCTCCCAAATGGGAGTGCATTTCTTAGGAA  350

seq1  GAATGTCCAATTCTTATATCAGATAACACATCAGGACATGGTATCTTACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTCCAATTCTTATATCAGATAACACATCAGGACATGGTATCTTACT  400

seq1  AAACAAAAATGAAATGTAAAGTACAAGATTTTACTATGGTTGATGAAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAAATGAAATGTAAAGTACAAGATTTTACTATGGTTGATGAAAAG  450

seq1  AACTTTGAGGACAACAACTCTCTACTGGGTCAGGTACATCTCGGGATGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTGAGGACAACAACTCTCTACTGGGTCAGGTACATCTCGGGATGGG  500

seq1  AGGAGACGCTGACTTCAGCCCTCTGTGCTATATAATAGGCCTTTTAATGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGACGCTGACTTCAGCCCTCTGTGCTATATAATAGGCCTTTTAATGG  550

seq1  GGGTGGGGGTAGGGGCGCGAGGCTCAGTAAATAACATCACTCAGACAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGGGGTAGGGGCGCGAGGCTCAGTAAATAACATCACTCAGACAGAT  600

seq1  CAAGGAGGAATGAAAGAGTTCTGGAGTCATGCCAACAACCCTTTGGCTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAGGAATGAAAGAGTTCTGGAGTCATGCCAACAACCCTTTGGCTTA  650

seq1  -TTTACATTTAATAGTCAAGGGAGTGAAACAATATTACAAAGAAAAATTG  699
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACATTTAATAGTCAAGGGAGTGAAACAATATTACAAAGAAAAATTG  700

seq1  TCCTCTCCTTGTTATTTCTGAATGTTTGCTT-ATTGTCCTCCTTTTGTTA  748
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TCCTCTCCTTGTTATTTCTGAATGTTTGCTTAATTGTCCTCCTTTTGTTA  750

seq1  TTTCTGAATGTTTGCTTCAAAACATTCTCCTGC-TGATGCTAGTTTATCT  797
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TTTCTGAATGTTTGCTTCAAAACATTCTCCTGCTTGATGCTAGTTTATCT  800

seq1  GAGCACACCTCATCTC-TTTTACTTTCAAAGTTAAAAGGACTCTCTGCTC  846
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GAGCACACCTCATCTCTTTTTACTTTCAAAGTTAAAAGGACTCTCTGCTC  850

seq1  ATCCACCATG-GAATGGGCAAAGAAGATAGATGTTCAAGACACACAATGA  895
      |||||||||| |||||||||||||  ||| |||||| ||| |||| ||||
seq2  ATCCACCATGTGAATGGGCAAAGATTATATATGTTCCAGATACAC-ATGA  899

seq1  TGACTACTAGAATTATCG-TGTTTTTATGAACATGCATACAACTGAAGA-  943
      |||||||||| ||||||| ||||||||||||  |||||||||||||||| 
seq2  TGACTACTAG-ATTATCGTTGTTTTTATGAAATTGCATACAACTGAAGAT  948

seq1  TAATTG-TGTTGTATG-AGTTAGGTCAATCACAGGAAGATAAAGATCACA  991
      |||||| ||||| ||| ||| |||||||||||||| |||  |||||||  
seq2  TAATTGTTGTTG-ATGAAGTAAGGTCAATCACAGGGAGAATAAGATCAAT  997

seq1  TGTTTTATTTTATTTGTGATTCTAACTTTTTA  1023
      |||||   ||||||||  ||||| ||||||||
seq2  TGTTT--ATTTATTTGGAATTCT-ACTTTTTA  1026