BAC Information

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BAC

Clone NameB6Ng01-106L22
Chromosome6 (Build37)
Map Location 45,917,261 - 46,048,849
singlet/doubletdoublet
Overlap geneCntnap2
Upstream genenone
Downstream geneRbpsuh-rs3, LOC622745
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-106L22.bB6Ng01-106L22.g
ACCDH914397DH914398
length1,1011,138
definitionDH914397|Mus musculus domesticus DNA, BAC clone: B6Ng01-106L22, 5' end.DH914398|Mus musculus domesticus DNA, BAC clone: B6Ng01-106L22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,917,261 - 45,918,371)(46,047,692 - 46,048,849)
sequence
gaattcaacgtcatcatgtttgagtccatgagagtgatggcattacaaac
attaacctatggattctcttaattaaagacagttttacactgtgtcatct
gactagattttaaagatgatcagaaagtcattttaaatccctttttatgt
ttaatcatttcattggtgtgttacttcttgtatgtgactcctgaaaactc
ttatagaagctattctgtgacctagagatcgagatggaattgattgatag
aaattagcagctcatttgcagctagaacccagatatcccgtttttttgga
gaaattacacagcagatacacacacacacacacacacacacacacacaca
cacacacacacacgacactttctaaactattttgcttttcaagaaaatat
gaacacagatttataactcaatactactgatcagccctgagtacatacat
acaagtagtattatacagacggatcaggttgtacttaaatattcaggtaa
cactgattaatgaaaagggagccataaatttgaaagggcacaagaattgg
tatgtgttagatcttggagagaggaaagggagagggggaaatggtgtaat
tttatggtaatcttaaaaaaaattaaaagaaatcatttttaaaagaaaat
gtgttctcagaccccagagtctcattacaacacaattagaaatggaagaa
catccactgaggcatggcaccaaaaagcagtttcttactggacattctga
gaaaacttcattaaaagccttttcaactctaatactaatcaatagagtaa
actcaatggggcaaaaaagaaaggcaatagggatattattaaagggctat
tttaatgagatactatgaaaataccaaattacttttgaccagaaagaaag
gccttttttagggctcaatagtttggaagaacagaattttgaaccatgag
aataggttaaaggaatcagcaaagttagaagaggtgagcactgatgcatt
cagcatggaaaaacagtgaaatgaatcagaagacagcacgcaaatgcaac
tcctcacaaacttgccttgacaagaccagtaaatattccccattgacctt
c
gaattcacaatcttccatttgaggcaagtagagaattaaatattgatgca
aatgtctgggttgtcactacccatttatttgtgaacagattgcacctatt
cttcctggctgcctgtagagagaaccctgagataggaagccacagcaatg
aacacacctagccctcattgcctgacttctgtcaatcttgctccaccaca
aggagccaagactccttggagtagagtgattctactctatgagaggaata
aaaatgattggaggaaaatgcctctgtgtcaaaaatcaggaaagctctca
ggagagtttggcactgtcgtgaaaagatacaaaccagatatacactcatc
caaaacagagcttcagcacaaaatagctgaacatatcattggatgtttga
aggacacaggaatccattaatccccagtggtacaagtaaaatcaaacaat
tggatgaatagaagatttttttagaaaaggctacttttctgtgtgtttca
aagcacttaactaattagacaaaatatttactttatacaaatgaaaactc
attttcttactgaacaagtttggtggtcaatacctgtgttagtattctct
ggaaaacacaaaggatagtgtgcatatatatgaggacacatatatacata
tacatacatttacaatttaaaagcatattttattttatctgtatgcaagc
atgcgtggagatcaaaagtcaacttttcaagtcagatcctttttctcttc
catcatatggtcctaagcattgaacttaggtcaatgtcattacctttggt
cacctctcactgattctagaaatgactcgaatataaatatatctttaaca
cgtgtacatctatgtgtgttcatacacacacaaataaacaatgatagaag
ctcagagggagacagagatacacacatagagagatagatagaggcagaga
gacatgacagagccagaaaggagacttggttttaaagaacaggcttctga
gatggaggcagcattctgaccctgggaggtgactggtaactggaacagaa
gtttgaagtttatttcagttgcagaagcagcaatagtctattcaatagcc
ttaggagcaccctgcttccaattcagttaagggacagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_45917261_45918371
seq2: B6Ng01-106L22.b_45_1145

seq1  GAATTCAACGTCATCATGTTTGAGTCCATGAGAGTGATGGCATTACAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACGTCATCATGTTTGAGTCCATGAGAGTGATGGCATTACAAAC  50

seq1  ATTAACCTATGGATTCTCTTAATTAAAGACAGTTTTACACTGTGTCATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACCTATGGATTCTCTTAATTAAAGACAGTTTTACACTGTGTCATCT  100

seq1  GACTAGATTTTAAAGATGATCAGAAAGTCATTTTAAATCCCTTTTTATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAGATTTTAAAGATGATCAGAAAGTCATTTTAAATCCCTTTTTATGT  150

seq1  TTAATCATTTCATTGGTGTGTTACTTCTTGTATGTGACTCCTGAAAACTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCATTTCATTGGTGTGTTACTTCTTGTATGTGACTCCTGAAAACTC  200

seq1  TTATAGAAGCTATTCTGTGACCTAGAGATCGAGATGGAATTGATTGATAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGAAGCTATTCTGTGACCTAGAGATCGAGATGGAATTGATTGATAG  250

seq1  AAATTAGCAGCTCATTTGCAGCTAGAACCCAGATATCCCGTTTTTTTGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAGCAGCTCATTTGCAGCTAGAACCCAGATATCCCGTTTTTTTGGA  300

seq1  GAAATTACACAGCAGATACACACACACACACACACACACACACACACACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTACACAGCAGATACACACACACACACACACACACACACACACACA  350

seq1  CACACACACACACGACACTTTCTAAACTATTTTGCTTTTCAAGAAAATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACGACACTTTCTAAACTATTTTGCTTTTCAAGAAAATAT  400

seq1  GAACACAGATTTATAACTCAATACTACTGATCAGCCCTGAGTACATACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACAGATTTATAACTCAATACTACTGATCAGCCCTGAGTACATACAT  450

seq1  ACAAGTAGTATTATACAGACGGATCAGGTTGTACTTAAATATTCAGGTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTAGTATTATACAGACGGATCAGGTTGTACTTAAATATTCAGGTAA  500

seq1  CACTGATTAATGAAAAGGGAGCCATAAATTTGAAAGGGCACAAGAATTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGATTAATGAAAAGGGAGCCATAAATTTGAAAGGGCACAAGAATTGG  550

seq1  TATGTGTTAGATCTTGGAGAGAGGAAAGGGAGAGGGGGAAATGGTGTAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGTTAGATCTTGGAGAGAGGAAAGGGAGAGGGGGAAATGGTGTAAT  600

seq1  TTTATGGTAATCTTAAAAAAAATTAAAAGAAATCATTTTTAAAAGAAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGGTAATCTTAAAAAAAATTAAAAGAAATCATTTTTAAAAGAAAAT  650

seq1  GTGTTCTCAGACCCCAGAGTCTCATTACAACACAATTAGAAATGGAAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCTCAGACCCCAGAGTCTCATTACAACACAATTAGAAATGGAAGAA  700

seq1  CATCCACTGAGGCATGGCACC-AAAAGCAGTTTCTTACTGGACATTCTGA  749
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CATCCACTGAGGCATGGCACCAAAAAGCAGTTTCTTACTGGACATTCTGA  750

seq1  GAAAACTTCATT-AAAGCCTTTTCAACTCTAATACTAATCAATAGAGTAA  798
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GAAAACTTCATTAAAAGCCTTTTCAACTCTAATACTAATCAATAGAGTAA  800

seq1  ACTCAAT-GGGCAAAAAAG-AAGGCAATAGGGATATTATTAAAGGGCTAT  846
      ||||||| ||||||||||| ||||||||||||||||||||||||||||||
seq2  ACTCAATGGGGCAAAAAAGAAAGGCAATAGGGATATTATTAAAGGGCTAT  850

seq1  TTTAATGAGAATACTATGAAAATACCAAATTACATTTGACAGGAAAGAAA  896
      ||||||||| ||||||||||||||||||||||| ||||||  ||||||||
seq2  TTTAATGAG-ATACTATGAAAATACCAAATTACTTTTGACCAGAAAGAAA  899

seq1  GGCCTTTTTTAGGGCTCAATAAGTTTTGAAAGAACAGAATTTTGAACCAT  946
      |||||||||||||||||||||   |||| |||||||||||||||||||||
seq2  GGCCTTTTTTAGGGCTCAATA--GTTTGGAAGAACAGAATTTTGAACCAT  947

seq1  GAGAATAAGTTTAAAAGAAATCAGCAAAAGTTAGGAAAGAGG-GAGCAAC  995
      ||||||| |||  |||| ||||||| ||||||||  |||||| |||| ||
seq2  GAGAATAGGTT--AAAGGAATCAGC-AAAGTTAG--AAGAGGTGAGC-AC  991

seq1  AGATGCATTCAGCAAGGGAAAAACAGTGAAATGAATCAGGAAAGACAGCC  1045
       |||||||||||| | |||||||||||||||||||||||  ||||||| |
seq2  TGATGCATTCAGC-ATGGAAAAACAGTGAAATGAATCAG--AAGACAG-C  1037

seq1  ACGC-AATGCAACTCCCACACACACTGCCTTTGACACAGCCCCAGTTAAT  1094
      |||| ||||||||| || |||| |||  | |||||| ||  ||||| |||
seq2  ACGCAAATGCAACT-CCTCACAAACTTGCCTTGACA-AG-ACCAGTAAAT  1084

seq1  A-TCCCCATTGACTCTTC  1111
      | ||||||||||| ||||
seq2  ATTCCCCATTGAC-CTTC  1101

seq1: chr6_46047692_46048849
seq2: B6Ng01-106L22.g_66_1203 (reverse)

seq1  ACTGTCCCTTTACTGAATGGGAAAGCAGGGTGCTTCCCTAAGGCTATTGG  50
      |||||||||| ||||||| || ||||||||||||  ||||||||||||| 
seq2  ACTGTCCCTTAACTGAATTGG-AAGCAGGGTGCT--CCTAAGGCTATTGA  47

seq1  ATATGACTATTGCCTGCTTTCCTGCAAACTGAAAATAAACTTCAGACTTT  100
      ||| |||||||| ||||||  |||| ||||| |||||||||||| |||| 
seq2  ATA-GACTATTG-CTGCTT--CTGC-AACTG-AAATAAACTTCAAACTT-  90

seq1  CCTTGGTGTCCAGTTTACCAGTTCACCTCCCAGGGTCCAGAATTGCCTGC  150
       ||  || ||||| ||||||| |||||||||||||| ||||||   ||||
seq2  -CT--GT-TCCAG-TTACCAG-TCACCTCCCAGGGT-CAGAAT--GCTGC  131

seq1  CTCCATCTCAGAAGCCTGTTCTTTAAAACCAAGTCTCCTTTCTGGCTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATCTCAGAAGCCTGTTCTTTAAAACCAAGTCTCCTTTCTGGCTCTG  181

seq1  TCATTGTCTCTCTGCCTCTATCTATCTCTCTATGTGTGTATCTCTGTCTC  250
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCA-TGTCTCTCTGCCTCTATCTATCTCTCTATGTGTGTATCTCTGTCTC  230

seq1  CCTCTGAGCTTCTATCATTGTTTATTTGTGTGTGTATGAACACACATAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGAGCTTCTATCATTGTTTATTTGTGTGTGTATGAACACACATAGA  280

seq1  TGTACACGTGTTAAAGATATATTTATATTCGAGTCATTTCTAGAATCAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACACGTGTTAAAGATATATTTATATTCGAGTCATTTCTAGAATCAGT  330

seq1  GAGAGGTGACCAAAGGTAATGACATTGACCTAAGTTCAATGCTTAGGACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGTGACCAAAGGTAATGACATTGACCTAAGTTCAATGCTTAGGACC  380

seq1  ATATGATGGAAGAGAAAAAGGATCTGACTTGAAAAGTTGACTTTTGATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGATGGAAGAGAAAAAGGATCTGACTTGAAAAGTTGACTTTTGATCT  430

seq1  CCACGCATGCTTGCATACAGATAAAATAAAATATGCTTTTAAATTGTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGCATGCTTGCATACAGATAAAATAAAATATGCTTTTAAATTGTAAA  480

seq1  TGTATGTATATGTATATATGTGTCCTCATATATATGCACACTATCCTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTATATGTATATATGTGTCCTCATATATATGCACACTATCCTTTG  530

seq1  TGTTTTCCAGAGAATACTAACACAGGTATTGACCACCAAACTTGTTCAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCCAGAGAATACTAACACAGGTATTGACCACCAAACTTGTTCAGT  580

seq1  AAGAAAATGAGTTTTCATTTGTATAAAGTAAATATTTTGTCTAATTAGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAATGAGTTTTCATTTGTATAAAGTAAATATTTTGTCTAATTAGTT  630

seq1  AAGTGCTTTGAAACACACAGAAAAGTAGCCTTTTCTAAAAAAATCTTCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCTTTGAAACACACAGAAAAGTAGCCTTTTCTAAAAAAATCTTCTA  680

seq1  TTCATCCAATTGTTTGATTTTACTTGTACCACTGGGGATTAATGGATTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCCAATTGTTTGATTTTACTTGTACCACTGGGGATTAATGGATTCC  730

seq1  TGTGTCCTTCAAACATCCAATGATATGTTCAGCTATTTTGTGCTGAAGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCCTTCAAACATCCAATGATATGTTCAGCTATTTTGTGCTGAAGCT  780

seq1  CTGTTTTGGATGAGTGTATATCTGGTTTGTATCTTTTCACGACAGTGCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTGGATGAGTGTATATCTGGTTTGTATCTTTTCACGACAGTGCCA  830

seq1  AACTCTCCTGAGAGCTTTCCTGATTTTTGACACAGAGGCATTTTCCTCCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTCCTGAGAGCTTTCCTGATTTTTGACACAGAGGCATTTTCCTCCA  880

seq1  ATCATTTTTATTCCTCTCATAGAGTAGAATCACTCTACTCCAAGGAGTCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTTTTATTCCTCTCATAGAGTAGAATCACTCTACTCCAAGGAGTCT  930

seq1  TGGCTCCTTGTGGTGGAGCAAGATTGACAGAAGTCAGGCAATGAGGGCTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCCTTGTGGTGGAGCAAGATTGACAGAAGTCAGGCAATGAGGGCTA  980

seq1  GGTGTGTTCATTGCTGTGGCTTCCTATCTCAGGGTTCTCTCTACAGGCAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGTTCATTGCTGTGGCTTCCTATCTCAGGGTTCTCTCTACAGGCAG  1030

seq1  CCAGGAAGAATAGGTGCAATCTGTTCACAAATAAATGGGTAGTGACAACC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAAGAATAGGTGCAATCTGTTCACAAATAAATGGGTAGTGACAACC  1080

seq1  CAGACATTTGCATCAATATTTAATTCTCTACTTGCCTCAAATGGAAGATT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACATTTGCATCAATATTTAATTCTCTACTTGCCTCAAATGGAAGATT  1130

seq1  GTGAATTC  1158
      ||||||||
seq2  GTGAATTC  1138