BAC Information

Click to search

BAC

Clone NameB6Ng01-106N09
Chromosome6 (Build37)
Map Location 10,629,963 - 10,783,116
singlet/doubletdoublet
Overlap geneLOC100040285
Upstream geneLOC330264
Downstream geneLOC667650, AA545190
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-106N09.bB6Ng01-106N09.g
ACCDH914463DH914464
length1,199989
definitionDH914463|Mus musculus domesticus DNA, BAC clone: B6Ng01-106N09, 5' end.DH914464|Mus musculus domesticus DNA, BAC clone: B6Ng01-106N09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,782,017 - 10,783,116)(10,629,963 - 10,630,950)
sequence
gaattcatagaactggtcttgaatagttcctggacctttaggaaattaag
ttctagtgattttcataatttttttcaatacttagtgctttctgtatgag
ttttttgggatttgctgtgcaatcatactagagtaaacagaagctcgagt
tgaagtctcactattatctattaactttaaaagtcactgtattttctcca
ccattgccaagataaccatatacattatggtgacaaatggcaaagaaaat
tgttttagtgcatattttatttgagaaggttctatttagttcactgggcc
gtttattaatcaaatttcttgtgttttcagtacttaacttttgcacattt
aaaaaatattttcctatattccatatatgttaatcccctccaaaatttat
atttttgaaataatttacaactctgtaggcttttttaaccttggtatggt
tttactgttgttgtttgcttgtttgttttttacattactccgcagaagcc
tttgattttatgtaacatcaattgtcagtttttaatcttacctctgatgc
tattggagtctttacagaaatttttcctatgcttctattatgacgtattt
tgttagaaaaagtacagtctattaaatacatgaggaccagaatttaataa
aataaggttgggtagggtagtgaaatgacattgcagagaaaatagtcggt
taatgaatatctaacatttaggattctctggactttactaaatgttctta
gaccttactcattatggttttctagcagtttgatttacaagttttacaaa
tcatgcttaaactgatttgcgtagagaataaaatatgtagacctagtttc
atcatttatttcaagaactatttgttgaagaaatactgttttgtactgaa
ttctttttatatctctgtcaaatattagacattggagtcacataagataa
tttttcagatttctattctttacattggtctacattgtgattttagagag
taatgtacagtgttgttaatatggctccaaaatataatataagatcttag
tattgtgacatcacttttctttttctggacaggaatgagttgggttattc
aagttttaaagatttggtatgtaagattattctttactagtctgtgacga
gctaatgcaaatttgatggggaagtgctttgaatattaactcatatttg
gaattcaaaggcaggcaacaaattcagggacaaccccaactccagttttt
ggaagacctgcatgaagaacaagttgtacatctgctacatatgtgaaggg
attctaggtccagtccatggcatgctctttgattggcagttcagtctctg
ggtgcaaccaaaggtccaggttagttgactcagttgttccttctgtggag
tccctgtctgtgttgcattgctcagtccatctcccattctcttctacaaa
actccagccaatgtttagctgtgggtttctgcacctgttttggttagatg
gtggtaggagcctttcagaccacagttatgttaggctcctctatacaagc
ataatagaataccattaatagtgtcagggattggttcttgcccatgggct
gagtcttaatttgggccagtcaatggttggctattccctctctctctgct
ctacctttgtagacatgaccatgccccacccactccaaatttctgttgtc
tttctcctgcttttcctacaggagattctcattcccctgccatgtttccc
tcaccatcccttgtcccatccagtttcctcatttgttccacttctgatat
ctattttatttcccctctatgaaggattcaaccatcctcccttggaccct
tcttgttatttggcttcttgtgtctgtggattgtagtctgattctgctgt
actttattgctgatatctacttataagtattcacttaacatacatgtcct
gttgggtctggattagctacctcacttaggacaatactttcttgttctat
gaatttgctttgcaaaattcatgatatccttggttttaatactcattgtg
aaaatgaaccacattttttgtattcattcttcaattgagtgtcatctagg
ttgttttcagtttctggctatgatgaataaagcttctatgaaagagctga
gtgtctgtacccagtgagaggatacccctggttttggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_10782017_10783116
seq2: B6Ng01-106N09.b_146_1243 (reverse)

seq1  CAAATATGATGTAGTAATTCAAAGCA-GTCCCCATCAAA-TTGCATTAGC  48
      |||||||||  || | ||||||||||  ||||||||||| ||||||||||
seq2  CAAATATGAGTTAAT-ATTCAAAGCACTTCCCCATCAAATTTGCATTAGC  49

seq1  ATCCTTCACAGAACTAGT-AAGAATAATCTTACATACCAAATCTTTAAAA  97
         | |||||| |||||| |||||||||||||||||||||||||||||||
seq2  --TCGTCACAG-ACTAGTAAAGAATAATCTTACATACCAAATCTTTAAAA  96

seq1  CCTTGAATAA-CCAACTCATTCCTGTCCAGAAAAAGAAAAGTGATGTCAC  146
       ||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  -CTTGAATAACCCAACTCATTCCTGTCCAGAAAAAGAAAAGTGATGTCAC  145

seq1  AATACT-AGATCTTATATTATATTTTGGAGCCATATTAACAACACTGTAC  195
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTAAGATCTTATATTATATTTTGGAGCCATATTAACAACACTGTAC  195

seq1  ATTACTCTCTAAAAATCACAATGTAGACCAATGTAAAGAATAGAAATCTG  245
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ATTACTCTCT-AAAATCACAATGTAGACCAATGTAAAGAATAGAAATCTG  244

seq1  AAAAATTATCTTATGTGACTCCAATTGTCTAATATTTGACAGAGATATAA  295
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AAAAATTATCTTATGTGACTCCAA-TGTCTAATATTTGACAGAGATATAA  293

seq1  AAAGAATTCAGTACAAAACAGTATTTCTTCAACAAATAGTTCTTGAAATA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATTCAGTACAAAACAGTATTTCTTCAACAAATAGTTCTTGAAATA  343

seq1  AATGATGAAACTAGGTCTACATATTTTATTCTCTACGCAAATCAGTTTAA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATGAAACTAGGTCTACATATTTTATTCTCTACGCAAATCAGTTTAA  393

seq1  GCATGATTTGTAAAACTTGTAAATCAAACTGCTAGAAAACCATAATGAGT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGATTTGTAAAACTTGTAAATCAAACTGCTAGAAAACCATAATGAGT  443

seq1  AAGGTCTAAGAACATTTAGTAAAGTCCAGAGAATCCTAAATGTTAGATAT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCTAAGAACATTTAGTAAAGTCCAGAGAATCCTAAATGTTAGATAT  493

seq1  TCATTAACCGACTATTTTCTCTGCAATGTCATTTCACTACCCTACCCAAC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTAACCGACTATTTTCTCTGCAATGTCATTTCACTACCCTACCCAAC  543

seq1  CTTATTTTATTAAATTCTGGTCCTCATGTATTTAATAGACTGTACTTTTT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTTTATTAAATTCTGGTCCTCATGTATTTAATAGACTGTACTTTTT  593

seq1  CTAACAAAATACGTCATAATAGAAGCATAGGAAAAATTTCTGTAAAGACT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACAAAATACGTCATAATAGAAGCATAGGAAAAATTTCTGTAAAGACT  643

seq1  CCAATAGCATCAGAGGTAAGATTAAAAACTGACAATTGATGTTACATAAA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATAGCATCAGAGGTAAGATTAAAAACTGACAATTGATGTTACATAAA  693

seq1  ATCAAAGGCTTCTGCGGAGTAATGTAAAAAACAAACAAGCAAACAACAAC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAGGCTTCTGCGGAGTAATGTAAAAAACAAACAAGCAAACAACAAC  743

seq1  AGTAAAACCATACCAAGGTTAAAAAAGCCTACAGAGTTGTAAATTATTTC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAACCATACCAAGGTTAAAAAAGCCTACAGAGTTGTAAATTATTTC  793

seq1  AAAAATATAAATTTTGGAGGGGATTAACATATATGGAATATAGGAAAATA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATATAAATTTTGGAGGGGATTAACATATATGGAATATAGGAAAATA  843

seq1  TTTTTTAAATGTGCAAAAGTTAAGTACTGAAAACACAAGAAATTTGATTA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAAATGTGCAAAAGTTAAGTACTGAAAACACAAGAAATTTGATTA  893

seq1  ATAAACGGCCCAGTGAACTAAATAGAACCTTCTCAAATAAAATATGCACT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACGGCCCAGTGAACTAAATAGAACCTTCTCAAATAAAATATGCACT  943

seq1  AAAACAATTTTCTTTGCCATTTGTCACCATAATGTATATGGTTATCTTGG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAATTTTCTTTGCCATTTGTCACCATAATGTATATGGTTATCTTGG  993

seq1  CAATGGTGGAGAAAATACAGTGACTTTTAAAGTTAATAGATAATAGTGAG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGTGGAGAAAATACAGTGACTTTTAAAGTTAATAGATAATAGTGAG  1043

seq1  ACTTCAACTCGAGCTTCTGTTTACTCTAGTATGATTGCACAGCAAATCCC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAACTCGAGCTTCTGTTTACTCTAGTATGATTGCACAGCAAATCCC  1093

seq1  AAAAA  1100
      |||||
seq2  AAAAA  1098

seq1: chr6_10629963_10630950
seq2: B6Ng01-106N09.g_68_1056

seq1  GAATTCAAAGGCAGGCAACAAATTCAGGGACAACCCCAACTCCAGTTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGGCAGGCAACAAATTCAGGGACAACCCCAACTCCAGTTTTT  50

seq1  GGAAGACCTGCATGAAGAACAAGTTGTACATCTGCTACATATGTGAAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGACCTGCATGAAGAACAAGTTGTACATCTGCTACATATGTGAAGGG  100

seq1  ATTCTAGGTCCAGTCCATGGCATGCTCTTTGATTGGCAGTTCAGTCTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAGGTCCAGTCCATGGCATGCTCTTTGATTGGCAGTTCAGTCTCTG  150

seq1  GGTGCAACCAAAGGTCCAGGTTAGTTGACTCAGTTGTTCCTTCTGTGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCAACCAAAGGTCCAGGTTAGTTGACTCAGTTGTTCCTTCTGTGGAG  200

seq1  TCCCTGTCTGTGTTGCATTGCTCAGTCCATCTCCCATTCTCTTCTACAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGTCTGTGTTGCATTGCTCAGTCCATCTCCCATTCTCTTCTACAAA  250

seq1  ACTCCAGCCAATGTTTAGCTGTGGGTTTCTGCACCTGTTTTGGTTAGATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCAGCCAATGTTTAGCTGTGGGTTTCTGCACCTGTTTTGGTTAGATG  300

seq1  GTGGTAGGAGCCTTTCAGACCACAGTTATGTTAGGCTCCTCTATACAAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTAGGAGCCTTTCAGACCACAGTTATGTTAGGCTCCTCTATACAAGC  350

seq1  ATAATAGAATACCATTAATAGTGTCAGGGATTGGTTCTTGCCCATGGGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAGAATACCATTAATAGTGTCAGGGATTGGTTCTTGCCCATGGGCT  400

seq1  GAGTCTTAATTTGGGCCAGTCAATGGTTGGCTATTCCCTCTCTCTCTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTTAATTTGGGCCAGTCAATGGTTGGCTATTCCCTCTCTCTCTGCT  450

seq1  CTACCTTTGTAGACATGACCATGCCCCACCCACTCCAAATTTCTGTTGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTTTGTAGACATGACCATGCCCCACCCACTCCAAATTTCTGTTGTC  500

seq1  TTTCTCCTGCTTTTCCTACAGGAGATTCTCATTCCCCTGCCATGTTTCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCCTGCTTTTCCTACAGGAGATTCTCATTCCCCTGCCATGTTTCCC  550

seq1  TCACCATCCCTTGTCCCATCCAGTTTCCTCATTTGTTCCACTTCTGATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCATCCCTTGTCCCATCCAGTTTCCTCATTTGTTCCACTTCTGATAT  600

seq1  CTATTTTATTTCCCCTCTATGAAGGATTCAACCATCCTCCCTTGGACCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTTATTTCCCCTCTATGAAGGATTCAACCATCCTCCCTTGGACCCT  650

seq1  TCTTGTTATTTGGCTTCTTGTGTCTGTGGATTGTAGTCTGATTCTGCTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTTATTTGGCTTCTTGTGTCTGTGGATTGTAGTCTGATTCTGCTGT  700

seq1  ACTTTATTGCTGATATCTACTTATAAGTATTCACTTAACATACATGTCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTATTGCTGATATCTACTTATAAGTATTCACTTAACATACATGTCCT  750

seq1  GTTGGGTCTGGATTAGCTACCTCACTTAGGACAATACTTTCTTGTTCTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGGTCTGGATTAGCTACCTCACTTAGGACAATACTTTCTTGTTCTAT  800

seq1  GAATTTGC-TTGCAAAATTCATGATATCCTTGGTTTTAATACTCATTGTG  849
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTGCTTTGCAAAATTCATGATATCCTTGGTTTTAATACTCATTGTG  850

seq1  AAAATGAACCACATTTTTTGTATTCATTCTTCAATTGAGTGTCATCTAGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGAACCACATTTTTTGTATTCATTCTTCAATTGAGTGTCATCTAGG  900

seq1  TTGTTTTCAGTTTCTGGCTATGATGAATAAAGCTTCTATGAACAGAGCTG  949
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TTGTTTTCAGTTTCTGGCTATGATGAATAAAGCTTCTATGAA-AGAGCTG  949

seq1  AGTGTCTGTACCCAG-GAGA-GATACACCTGGTTTTTGGTG  988
      ||||||||||||||| |||| ||||| ||||| ||||||||
seq2  AGTGTCTGTACCCAGTGAGAGGATACCCCTGG-TTTTGGTG  989