BAC Information

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BAC

Clone NameB6Ng01-106O04
Chromosome6 (Build37)13 (Build37)
Map Location 18,835,452 - 18,835,9685,736,182 - 5,737,377
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSt7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7
Downstream geneLOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-106O04.bB6Ng01-106O04.g
ACCDH914501DH914502
length1,0131,183
definitionDH914501|Mus musculus domesticus DNA, BAC clone: B6Ng01-106O04, 5' end.DH914502|Mus musculus domesticus DNA, BAC clone: B6Ng01-106O04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,835,452 - 18,835,968)(5,736,182 - 5,737,377)
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctggagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcgattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacacgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctggatcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtctggcatggtgattccgccagaagttcttt
tatccttgagaagactttttgctatcctaggttttttgttattccagaca
aatttgcaaattgctccttccaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcagatagccatttt
tacaatgttgatcctgccaatccatgagcatgggagatctttccatcttc
tgagatcttctttaatttctttcttcagagatttgaagtttttatcatac
agatctttcacctccttagttagagtcacgccagatatttatattatttg
tgactattgagaacggtgtgtttccctaatttcttctcagcctgttattc
ttgtatagagaaa
gaattcaagagttcattgaacaaaggcacacaggctatatggaaaggcta
caacacaaaatgaacaaaataaaatgcagtgaaatactcttggtgttaaa
gcctttttacatttagatatttatattgtatgaagtgaggatagccatat
taactccataggatgcatctggagatcagagaacaacttacaggaattgg
ttctctatctctctgtgttttctcttcttgtggcttctagggatttaact
gagacggtcaggtttggcaggaaatgcctttacccactgatctgtctctc
tgattttagaattaatccaagagctggtcattctccatttttgagccgga
caaaattaacctcaattgcagcaactcatttccattcctgaaatacacac
atggctcattatcacttatgggcgtctctccctgcacagataaactactc
tctgggcatcacccatgcaaagatctcatcagcacgtggagggcatgtga
tataaagcacgtccacaagggaagaattatcttttactgcaatctgtgaa
cactatggaaaaagactcttccgtgatagaattataaatgctggcccatc
aaacaaatacctcccgtctaaaccctgggcgaatattgaatgccattttt
tttcctgcttggcactttgatgtaactatgaaataatatcaaataatttt
gtgtttacatatgccaggtgacaaactgcatatgcactattatagcattt
agtaaggaattttacaggcatctaatgcataatgaaaattctgtattgaa
atatacattttctcctacagctttatgcgtattagacacagaggagacag
gggagaatcttccaatattggaagcacacaccaattcaattctttcataa
ctcactactgtgcatgaagccagagtggaagaagtcagcagatatcaaga
ggagcaaactaaaactaattataataaatactatgaagtgatctctgtgg
ggagtgaaattatatttttgttagaagctacattggtcacaattttacat
caatcttgaccattcagaatagctgattgccatttagaaaaagatgagga
gatgtagctccgatgtttagccctttccttcctaaagaagcttgactata
accatgctaaatgaactctactcagcaaatgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_18835452_18835968
seq2: B6Ng01-106O04.b_45_562 (reverse)

seq1  ACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATC  50

seq1  CAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGCACAACTGGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGCACAACTGGTT  100

seq1  GTTATCTTGTAGAAGAATGTGAATCGATCCATACTTATCTCCATGTACTA  150
      |||||| |||||||||||| |||||||||||||||||||||| |||||||
seq2  GTTATCGTGTAGAAGAATGCGAATCGATCCATACTTATCTCCTTGTACTA  150

seq1  AGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACCAGAGACACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACCAGAGACACTG  200

seq1  AAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCAGAGG  250
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGG  250

seq1  GGAAAAGTTCCTGAACAGAACAGCAATGGC-TGTGCTGTGAGGTAGAGAA  299
      |||||| ||||||||||||||||||||||| |||||||| || | |||||
seq2  GGAAAAATTCCTGAACAGAACAGCAATGGCTTGTGCTGTAAGATCGAGAA  300

seq1  TCGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGAC  350

seq1  ACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAAGGATCTTTAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAAGGATCTTTAC  400

seq1  CTATCCTAAATCAGATAGGGGACTAATATCCAACATATATAAAGAACTCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCTAAATCAGATAGGGGACTAATATCCAACATATATAAAGAACTCA  450

seq1  AGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAATAAATGGGGCTCA  499
      |||||||||||| |||||||||||||||||||||||| ||||||||||||
seq2  AGAAGGTGGACTCCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCA  500

seq1  GAACTGAACAAAGAATTC  517
      ||||||||||||||||||
seq2  GAACTGAACAAAGAATTC  518

seq1: chr13_5736182_5737377
seq2: B6Ng01-106O04.g_68_1250

seq1  GAATTCAAGAGTTCATTGAACAAAGGCACACAGGCTATATGGAAAGGCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGAGTTCATTGAACAAAGGCACACAGGCTATATGGAAAGGCTA  50

seq1  CAACACAAAATGAACAAAATAAAATGCAGTGAAATACTCTTGGTGTTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACAAAATGAACAAAATAAAATGCAGTGAAATACTCTTGGTGTTAAA  100

seq1  GCCTTTTTACATTTAGATATTTATATTGTATGAAGTGAGGATAGCCATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTTTACATTTAGATATTTATATTGTATGAAGTGAGGATAGCCATAT  150

seq1  TAACTCCATAGGATGCATCTGGAGATCAGAGAACAACTTACAGGAATTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCCATAGGATGCATCTGGAGATCAGAGAACAACTTACAGGAATTGG  200

seq1  TTCTCTATCTCTCTGTGTTTTCTCTTCTTGTGGCTTCTAGGGATTTAACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTATCTCTCTGTGTTTTCTCTTCTTGTGGCTTCTAGGGATTTAACT  250

seq1  GAGACGGTCAGGTTTGGCAGGAAATGCCTTTACCCACTGATCTGTCTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACGGTCAGGTTTGGCAGGAAATGCCTTTACCCACTGATCTGTCTCTC  300

seq1  TGATTTTAGAATTAATCCAAGAGCTGGTCATTCTCCATTTTTGAGCCGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTAGAATTAATCCAAGAGCTGGTCATTCTCCATTTTTGAGCCGGA  350

seq1  CAAAATTAACCTCAATTGCAGCAACTCATTTCCATTCCTGAAATACACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATTAACCTCAATTGCAGCAACTCATTTCCATTCCTGAAATACACAC  400

seq1  ATGGCTCATTATCACTTATGGGCGTCTCTCCCTGCACAGATAAACTACTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTCATTATCACTTATGGGCGTCTCTCCCTGCACAGATAAACTACTC  450

seq1  TCTGGGCATCACCCATGCAAAGATCTCATCAGCACGTGGAGGGCATGTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGCATCACCCATGCAAAGATCTCATCAGCACGTGGAGGGCATGTGA  500

seq1  TATAAAGCACGTCCACAAGGGAAGAATTATCTTTTACTGCAATCTGTGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAGCACGTCCACAAGGGAAGAATTATCTTTTACTGCAATCTGTGAA  550

seq1  CACTATGGAAAAAGACTCTTCCGTGATAGAATTATAAATGCTGGCCCATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATGGAAAAAGACTCTTCCGTGATAGAATTATAAATGCTGGCCCATC  600

seq1  AAACAAATACCTCCCGTCTAAACCCTGGGCGAATATTGAATGCCATTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAATACCTCCCGTCTAAACCCTGGGCGAATATTGAATGCCATTTTT  650

seq1  TTTCCTGCTTGGCACTTTGATGTAACTATGAAATAATATCAAATAATTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGCTTGGCACTTTGATGTAACTATGAAATAATATCAAATAATTTT  700

seq1  GTGTTTACATATGCCAGGTGACAAACTGCATATGCACTATTATAGCATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTACATATGCCAGGTGACAAACTGCATATGCACTATTATAGCATTT  750

seq1  AGTAAGGAATTTTACAGGCATCTAATGCATAATGAAAATTCTGTATTGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGGAATTTTACAGGCATCTAATGCATAATGAAAATTCTGTATTGAA  800

seq1  ATATACATTTTCTCCTACAGCTTTATGCGTATTAGACACAGAGGAGACAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACATTTTCTCCTACAGCTTTATGCGTATTAGACACAGAGGAGACAG  850

seq1  GGGAGAATCTTCCAATATTGGAAGCACACACCAATTCAATTCTTTCATAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAATCTTCCAATATTGGAAGCACACACCAATTCAATTCTTTCATAA  900

seq1  CTCACTACTGTGCATGAAGCCAGAGGTGGAAGAAGTCAGCAGAATATCAA  950
      |||||||||||||||||||||||| ||||||||||||||||| ||||| |
seq2  CTCACTACTGTGCATGAAGCCAGA-GTGGAAGAAGTCAGCAG-ATATC-A  947

seq1  AGAGGAAGCAAAACTAAAAACTAATTATAATAAATACTATTGAAGTGATC  1000
      ||||| ||| ||||| ||||||||||||||||||||||| ||||||||||
seq2  AGAGG-AGC-AAACT-AAAACTAATTATAATAAATACTA-TGAAGTGATC  993

seq1  TCTGT-GGGAGTGAAAATTAATATTTTTGTTAGAAGCTACATTGGTCAAC  1049
      ||||| ||||||||||  | ||||||||||||||||||||||||||| ||
seq2  TCTGTGGGGAGTGAAA--TTATATTTTTGTTAGAAGCTACATTGGTC-AC  1040

seq1  AATTTTACATCAATC-TGACCATTCAGAAATAAGCTGATTGCCATTTAGA  1098
      ||||||||||||||| |||||||||||||   ||||||||||||||||||
seq2  AATTTTACATCAATCTTGACCATTCAGAA--TAGCTGATTGCCATTTAGA  1088

seq1  ACAAGATGA-GAGATGGTAGCTCAGAGTGTTTAG-CCTTTCCTTCCTAAA  1146
      | ||||||| ||||| ||||||| || ||||||| |||||||||||||||
seq2  AAAAGATGAGGAGAT-GTAGCTCCGA-TGTTTAGCCCTTTCCTTCCTAAA  1136

seq1  AGAACATGACTATAAACCATGGTATAAATGAA-TCTACTCAGCACCATGA  1195
        | | ||||||| |||||||   |||||||| |||||||||||  ||||
seq2  GAAGCTTGACTAT-AACCATG--CTAAATGAACTCTACTCAGCA-AATGA  1182

seq1  A  1196
      |
seq2  A  1183