BAC Information

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BAC

Clone NameB6Ng01-106P15
Chromosome6 (Build37)
Map Location 54,487,047 - 54,683,544
singlet/doubletdoublet
Overlap geneScrn1, Fkbp14, Plekha8, LOC100041292, 2410066E13Rik
Upstream geneCreb5, LOC384386, 1200009O22Rik, Cpvl, LOC666305, Chn2, LOC100042056, Prr15, EG640926, Wipf3
Downstream geneZnrf2, Nod1, A030007L17Rik, Gars, Crhr2, Inmt, C330043M08Rik, Aqp1, Ghrhr, Adcyap1r1, LOC100042219, Neurod6, LOC100041339
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-106P15.bB6Ng01-106P15.g
ACCDH914567DH914568
length1,0731,212
definitionDH914567|Mus musculus domesticus DNA, BAC clone: B6Ng01-106P15, 5' end.DH914568|Mus musculus domesticus DNA, BAC clone: B6Ng01-106P15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,682,452 - 54,683,544)(54,487,047 - 54,488,272)
sequence
gaattcaacccgcagcaccaaaaaaatagcaacatcaatcataagtccgt
attattatcaagacttcttccatagatctggaggccaaacctcacctagt
acataggagatttgaaatttgaaatcaaggctttctggggccagatccaa
agctatcaaacaatcaggtactccaattcccctccactaccacctcccat
tctaaagtgggccagaacaggcaacctgggacaaggacaaggctgttgtc
acagtgtaggaggatccctgccaagaggaagggcagagctggacccgagg
ggcagcatgggctctgttggtggggtaattcagcccagtctaatttgtgt
cttccctaacaaatggctgagacttcataaatagcatgcttttctgtggg
gaatacctgagcgagaggaattgaggctggccgtgtgagattggtgagta
aaatttggccttcacgaaagaactgactgtgtgcaattattgttgtatta
tgtacccctttcttccttttttttttttttttttgaaagcactctttcat
tccacacattctatgtgccagcaatcatgacagtctgggtttcaaaaatg
ttttctgagccaactctgggggaagggtagctgttaccactctctcaaag
caaacagtccgtgtgtcttcccaaatgctgggctttggaagtgtaaagtt
agctcggatctcagtgtaaatgtacctgtgaaagcatagcaggagtgagc
atcccggggagagggcgtctagcttccccttcatgcgtgctgcaatctgt
gggtttcccagcagtcacagtttgttgctaaagtctttccatttatcttc
ccttctccctttgcctttctttcacgagagtcacagctccttgaaatagc
ttgccggaatcagtgcgcctcacttgaaacaagtttgaatgagagtttgg
ggctggtagtgctcagcagtcagctctgcccagtatgtgccagctatcta
tcagtcagcctcagcaccacaaaaacaaagcgacatcgagatgagagatt
cctaacgagttccataaacatgc
gaattcaaagggactgcaggtttaagacaagaaatggcctctgtcaggaa
gtaagataggcaaagcagctcgaggccaaatagaaagacgagagaaactt
aaatggacacaagaagcaggggaaacccctcaccctgggatctagcttgc
cttctgagagcttagagaattcagcacagctgctaaggccaaaatgacct
gagcgctttcctagaagcatctccagcaagaatattcaagacagcaaatg
aggagggcagagaggtggctctgtggttaagggcaccggcttctctctca
aaggacatgggttcaattcccagcaatcacatcacggctcaccaccggcc
cacacctgtttataactctacttccagagcatctaatgtctcctgctcgc
catggccgccaggcaagcacgtgggacacagacgtatatacaggcaaaac
acctacacacataagataaaaagaaatagcaaacgacccgtgcttcctga
agccaagaacgtttgtatctcaggctccatcgaattagctctcctcccgc
atttatccccaagccctaacaccactcctttgaaaaatgcaattacattt
acaaagagaaattattgatataaaaaaaccacatcgtctcatatcgttcc
ctcaatttgaaatttttaattttaaccattgtttaatcacaggcgtggtc
agaggcttatctcctgggtgatttctagatcctaacaagtttgataattg
atattaactgttgtggtcctcaaacatgctccactgctattttaatatgt
atatttgaaatgtatctgtataggagtaatgtcaccacgtaggccgcctt
tacagcaaatgctataaattacactggaatttctgactttcatctggcaa
gaggcttcaatcaggaattcctcccgtattccctttgtttttcatttctg
tcttgcctcagagcatttacatcatatacttactgctctatgactgggag
gatacggagcacacacaatagtgaccatcatcaggatgattcaggacatg
ttcacaggggcctgtgtgttcatacaccacggatctttgtggtccttctt
tgaatagctttaccgggctcatttctatagcaaatgaacgcttaaatata
tggccagtacaaacggctgctcctctagcagaacgttagtctccactaat
aaagaaggtttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_54682452_54683544
seq2: B6Ng01-106P15.b_48_1120 (reverse)

seq1  GCATGTTTATTGTGAAAACTCGTTTTAGGGAAATCTCTCAATCTCTGATG  50
      |||||||||| |    ||||||  |||||  |||||||| ||||| ||||
seq2  GCATGTTTATGG----AACTCG--TTAGG--AATCTCTC-ATCTC-GATG  40

seq1  TCTGCTTTGGTTTTTGTGGTGCTGAGGGCTGACTGGATAGATAGCCTTGC  100
      || ||||| |||||||||||||||| |||||||| ||||||||| || ||
seq2  TC-GCTTT-GTTTTTGTGGTGCTGA-GGCTGACT-GATAGATAG-CTGGC  85

seq1  ACATACTGGGCAGAAGCTGGACTGCTGAGCAACTACCAAGCCCCAAACTC  150
      ||||||||||||| |||| ||||||||||| |||||| ||||||||||||
seq2  ACATACTGGGCAG-AGCT-GACTGCTGAGC-ACTACC-AGCCCCAAACTC  131

seq1  TCATTCAAACTTGTTTCAAGTGAGGCGCACTGATTCCGGCAAGCTATTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCAAACTTGTTTCAAGTGAGGCGCACTGATTCCGGCAAGCTATTTC  181

seq1  AAGGAGCTGTGACTCTCGTGAAAGAAAGGCAAAGGGAGAAGGGAAGATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGCTGTGACTCTCGTGAAAGAAAGGCAAAGGGAGAAGGGAAGATAA  231

seq1  ATGGAAAGACCTTAGCAACAAACCTGTGACTGCTGGGAAACCCACAGATT  300
      |||||||||| ||||||||||| |||||||||||||||||||||||||||
seq2  ATGGAAAGACTTTAGCAACAAA-CTGTGACTGCTGGGAAACCCACAGATT  280

seq1  GCAGCACGCATGAAGGGGAAGCTAGACGCCCTCTCCCCGGGATGCTCACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCACGCATGAAGGGGAAGCTAGACGCCCTCTCCCCGGGATGCTCACT  330

seq1  CCTGCTATGCTTTCACAGGTACATTTACACTGAGATCCGAGCTAACTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTATGCTTTCACAGGTACATTTACACTGAGATCCGAGCTAACTTTA  380

seq1  CACTTCCAAAGCCCAGCATTTGGGAAGACACACGGACTGTTTGCTTTGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCCAAAGCCCAGCATTTGGGAAGACACACGGACTGTTTGCTTTGAG  430

seq1  AGAGTGGTAACAGCTACCCTTCCCCCAGAGTTGGCTCAGAAAACATTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGGTAACAGCTACCCTTCCCCCAGAGTTGGCTCAGAAAACATTTTT  480

seq1  GAAACCCAGACTGTCATGATTGCTGGCACATAGAATGTGTGGAATGAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCCAGACTGTCATGATTGCTGGCACATAGAATGTGTGGAATGAAAG  530

seq1  AGTGCTTTCAAAAAAAAAAAAAAAAAAGGAAGAAAGGGGTACATAATACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTTTCAAAAAAAAAAAAAAAAAAGGAAGAAAGGGGTACATAATACA  580

seq1  ACAATAATTGCACACAGTCAGTTCTTTCGTGAAGGCCAAATTTTACTCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATAATTGCACACAGTCAGTTCTTTCGTGAAGGCCAAATTTTACTCAC  630

seq1  CAATCTCACACGGCCAGCCTCAATTCCTCTCGCTCAGGTATTCCCCACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTCACACGGCCAGCCTCAATTCCTCTCGCTCAGGTATTCCCCACAG  680

seq1  AAAAGCATGCTATTTATGAAGTCTCAGCCATTTGTTAGGGAAGACACAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCATGCTATTTATGAAGTCTCAGCCATTTGTTAGGGAAGACACAAA  730

seq1  TTAGACTGGGCTGAATTACCCCACCAACAGAGCCCATGCTGCCCCTCGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACTGGGCTGAATTACCCCACCAACAGAGCCCATGCTGCCCCTCGGG  780

seq1  TCCAGCTCTGCCCTTCCTCTTGGCAGGGATCCTCCTACACTGTGACAACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCTCTGCCCTTCCTCTTGGCAGGGATCCTCCTACACTGTGACAACA  830

seq1  GCCTTGTCCTTGTCCCAGGTTGCCTGTTCTGGCCCACTTTAGAATGGGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGTCCTTGTCCCAGGTTGCCTGTTCTGGCCCACTTTAGAATGGGAG  880

seq1  GTGGTAGTGGAGGGGAATTGGAGTACCTGATTGTTTGATAGCTTTGGATC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTAGTGGAGGGGAATTGGAGTACCTGATTGTTTGATAGCTTTGGATC  930

seq1  TGGCCCCAGAAAGCCTTGATTTCAAATTTCAAATCTCCTATGTACTAGGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCCAGAAAGCCTTGATTTCAAATTTCAAATCTCCTATGTACTAGGT  980

seq1  GAGGTTTGGCCTCCAGATCTATGGAAGAAGTCTTGATAATAATACGGACT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTTGGCCTCCAGATCTATGGAAGAAGTCTTGATAATAATACGGACT  1030

seq1  TATGATTGATGTTGCTATTTTTTTGGTGCTGCGGGTTGAATTC  1093
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATTGATGTTGCTATTTTTTTGGTGCTGCGGGTTGAATTC  1073

seq1: chr6_54487047_54488272
seq2: B6Ng01-106P15.g_68_1279

seq1  GAATTCAAAGGGACTGCAGGTTTAAGACAAGAAATGGCCTCTGTCAGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGGGACTGCAGGTTTAAGACAAGAAATGGCCTCTGTCAGGAA  50

seq1  GTAAGATAGGCAAAGCAGCTCGAGGCCAAATAGAAAGACGAGAGAAACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGATAGGCAAAGCAGCTCGAGGCCAAATAGAAAGACGAGAGAAACTT  100

seq1  AAATGGACACAAGAAGCAGGGGAAACCCCTCACCCTGGGATCTAGCTTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGACACAAGAAGCAGGGGAAACCCCTCACCCTGGGATCTAGCTTGC  150

seq1  CTTCTGAGAGCTTAGAGAATTCAGCACAGCTGCTAAGGCCAAAATGACCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGAGAGCTTAGAGAATTCAGCACAGCTGCTAAGGCCAAAATGACCT  200

seq1  GAGCGCTTTCCTAGAAGCATCTCCAGCAAGAATATTCAAGACAGCAAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCGCTTTCCTAGAAGCATCTCCAGCAAGAATATTCAAGACAGCAAATG  250

seq1  AGGAGGGCAGAGAGGTGGCTCTGTGGTTAAGGGCACCGGCTTCTCTCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGGCAGAGAGGTGGCTCTGTGGTTAAGGGCACCGGCTTCTCTCTCA  300

seq1  AAGGACATGGGTTCAATTCCCAGCAATCACATCACGGCTCACCACCGGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACATGGGTTCAATTCCCAGCAATCACATCACGGCTCACCACCGGCC  350

seq1  CACACCTGTTTATAACTCTACTTCCAGAGCATCTAATGTCTCCTGCTCGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCTGTTTATAACTCTACTTCCAGAGCATCTAATGTCTCCTGCTCGC  400

seq1  CATGGCCGCCAGGCAAGCACGTGGGACACAGACGTATATACAGGCAAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCCGCCAGGCAAGCACGTGGGACACAGACGTATATACAGGCAAAAC  450

seq1  ACCTACACACATAAGATAAAAAGAAATAGCAAACGACCCGTGCTTCCTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACACACATAAGATAAAAAGAAATAGCAAACGACCCGTGCTTCCTGA  500

seq1  AGCCAAGAACGTTTGTATCTCAGGCTCCATCGAATTAGCTCTCCTCCCGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAGAACGTTTGTATCTCAGGCTCCATCGAATTAGCTCTCCTCCCGC  550

seq1  ATTTATCCCCAAGCCCTAACACCACTCCTTTGAAAAATGCAATTACATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATCCCCAAGCCCTAACACCACTCCTTTGAAAAATGCAATTACATTT  600

seq1  ACAAAGAGAAATTATTGATATAAAAAAACCACATCGTCTCATATCGTTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGAGAAATTATTGATATAAAAAAACCACATCGTCTCATATCGTTCC  650

seq1  CTCAATTTGAAATTTTTAATTTTAACCATTGTTTAATCACAGGCGTGGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATTTGAAATTTTTAATTTTAACCATTGTTTAATCACAGGCGTGGTC  700

seq1  AGAGGCTTATCTCCTGGGTGATTTCTAGATCCTAACAAGTTTGATAATTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCTTATCTCCTGGGTGATTTCTAGATCCTAACAAGTTTGATAATTG  750

seq1  ATATTAACTGTTGTGGTCCTCAAACATGCTCCACTGCTATTTTAATATGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAACTGTTGTGGTCCTCAAACATGCTCCACTGCTATTTTAATATGT  800

seq1  ATATTTGAAATGTATCTGTATAAGGAGTAATGTCACCACGTAGGCCGCCT  850
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ATATTTGAAATGTATCTGTAT-AGGAGTAATGTCACCACGTAGGCCGCCT  849

seq1  TTACAGCAAATGCTATAAATTACACTGGAATTTCTGACTTTCATCTGGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGCAAATGCTATAAATTACACTGGAATTTCTGACTTTCATCTGGCA  899

seq1  AGAGGCTTCAATCA-GAATTCCTCCCCGTATTCCCTTTGGTTTTTCATTT  949
      |||||||||||||| |||||||| |||||||||||||| |||||||||||
seq2  AGAGGCTTCAATCAGGAATTCCT-CCCGTATTCCCTTT-GTTTTTCATTT  947

seq1  CTGTCTTGCCTCAAGAGCATTTACATCATATACTTACTGCTCTATGACTG  999
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTGCCTC-AGAGCATTTACATCATATACTTACTGCTCTATGACTG  996

seq1  GGAAGGATACGGAGCACACACAAATAGTGACCATCATCAGGATGAATTCA  1049
      || |||||||||||||||||| |||||||||||||||||||||| |||||
seq2  GG-AGGATACGGAGCACACAC-AATAGTGACCATCATCAGGATG-ATTCA  1043

seq1  GGACATG-TCACAGGGGCCTGTGTGTTCCATACA-CACGGTATC-TTGTG  1096
      ||||||| ||||||||||||||||||| |||||| ||||| ||| |||||
seq2  GGACATGTTCACAGGGGCCTGTGTGTT-CATACACCACGG-ATCTTTGTG  1091

seq1  GCCCTTCTCTGATTAGCTTTACCGTGCTTCCTATTCTATAGCATATAATT  1146
      | |||||| ||| ||||||||||| |||  |  |||||||||    || |
seq2  GTCCTTCTTTGAATAGCTTTACCGGGCT--CATTTCTATAGC----AAAT  1135

seq1  GATGTTTTAATTATATGTGCTAGTTACACAACGGCTGCCTCCTTCAGCGA  1196
      ||    |||| |||||| || || |||| |||||||| |||||  ||| |
seq2  GAACGCTTAAATATATG-GCCAG-TACA-AACGGCTG-CTCCTCTAGC-A  1180

seq1  GGACGTCAGT-TCCACTAATAAAGATGTTTT-  1226
      | |||| ||| |||||||||||||| | ||| 
seq2  GAACGTTAGTCTCCACTAATAAAGAAGGTTTT  1212