BAC Information

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BAC

Clone NameB6Ng01-107G09
Chromosome6 (Build37)3 (Build37)
Map Location 130,275,801 - 130,276,91790,660,619 - 90,660,896
singlet/doubletsingletsinglet
Overlap geneKlra3
Upstream gene4922502D21Rik, Clec12a, 4933425B16Rik, Clec1b, Clec9a, Clec1a, Clec7a, Olr1, D630042F21Rik, Gabarapl1, Klre1, Klrd1, Klrk1, Klrc3, Klrc2, Klrc1, LOC640755, Klri1, Klri2, Gm156, Klra17, Klra5, LOC667764, Klra6, LOC100038893, LOC100038894, LOC100038895, Klra4, LOC667769, LOC100038897, Klra8, EG654449, Klra9, Klra7, LOC100038898, Klra12, Klra10, Klra13
Downstream geneKlra1, LOC100038902, LOC100038903, LOC625436, EG625473, LOC640779, LOC667793, EG667798, EG625558, LOC625566, EG636947, LOC625628, EG625648, LOC667830, EG434094, Klra2, LOC434095, 2010012C16Rik, Styk1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-107G09.bB6Ng01-107G09.g
ACCDH914877DH914878
length1,1931,001
definitionDH914877|Mus musculus domesticus DNA, BAC clone: B6Ng01-107G09, 5' end.DH914878|Mus musculus domesticus DNA, BAC clone: B6Ng01-107G09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(130,275,801 - 130,276,917)(90,660,619 - 90,660,896)
sequence
gaattcaatttcaaaccaatatggaaataccttcccctaggaaggctttc
aaggggttagtaagttatctaaagatattaggggagaaaaggtatgagta
gtcctatcctgcactggaccttgtatgctacaatggtgacctgctagata
agacatgttataggatcaataaatgtattcttattggaaatgaggccatt
accatgggaggcaagcatgcttggtattgtaatctaaatcagaaatccaa
tattgggaaggtccaatgccccacgttcaaacttgctataatctctctgc
taagtgagcagtggttaacatttacacctatagcctagacttgtgatgct
ctcaaccttcatcacagaagcttctttattcggtgaggcagagtacatgc
agtgtgtcagaattggccaaactgctttggagaagtgtttatgggctgag
ccctaaaggagacatctatatcaacgtcttcctttccatgccaccagcaa
gtctcagggaatagcagggaagagaaaataaaaaaggtagcaccagagaa
gaaggaaggctttgttaaattctgccttctagacttctagacaagacgaa
ttttttttagagtttagttcattttagaaaccattattaggtgacagctg
ctgaaaaagtgagattcacttctttattgagtgtgtggctattgttggat
tttctgattccagtgcatggcctacaaccatgcacctgtggactgttaat
tagtaaggtaagaagttatcatgggacatgatagaaatttgagtagcagt
aggggcagataggttcatatatcatttgatgtatatatggtactaaagaa
aaagtcatattattaagaaagttaatcagtaaacagatttctaccagaat
gtagataaaaaataaacttgagattcacacaacacacctttaaatggaag
gaaagcattcatatgtatgatatataaacatgtacttatatttataaata
actgtaataatataagctaacaacaataaaatgttaatgaaatctgttat
actcagactattgtatctgtcatgagcattccctcaaattacaccatcct
aaggttgtgacggtctagtgcctccaatgtgaaccaccattccatagaag
ttatgcaatactaagcattttggtcacactcctccaaatatat
gaattctacacatcatggtatatagctgcataagtatgttcatagatttc
tccctccttagcctatgtggaactttctatttctttgtacacaagcaaat
agcaagaaagtttctatgtgtgttccaaattgatttctctaaattgtgta
agcacgatgttcagaaataggcttttataatattgttctgatgagaaacc
aaaggcaaaatcagtatcctgtgttgctttggggacctctgggatctttc
tgaacaacatctggccatgggacttttctatgatggctagtggtttctga
aactgccatcatcaaccatcaaaaagtacctctattcacctataactgac
aatactgagactgcacatgtttcattctgtcaactctcagtcttgtatag
ggaaaatttcatgggacattagcccctgcttggaaactactggctattga
taaatgcagggaggaggggtcatcattggatggatacagaactgctatga
tcaagtgatctgggctctctgaaacaagaaccatttacaaagaaaaaaat
taaagtattcctacagaaacttactggctatacaaaccacatttaaggcc
agaccccatggccttcactagaaggcccaaaatgaattcaatggcatttt
tgaagttctttgtctcacaatgtctcaaatgtcaggaaatttctttttct
tttaagtcttttggttatgtattatgatttctatttttgtggatatgaag
tttctgtgtgcgcaaatatgtgtgtctctgtgtctacttgtgtttctttt
tttaacattctttttttttaactttttcaaaattattttaactttttcaa
ttttttaaattaggtatgttcttcatttacatttcaatgctatcctcaaa
gtcccctataccctcctctaacactcactcctacttctggccctggtgtt
cccctgtactgagcatattagtttgcagaccagggcctctctcttacgat
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_130275801_130276917
seq2: B6Ng01-107G09.b_129_1234

seq1  AAAGGTATGAGTAGTCCTATCCTGCACTGGACCTTGTATGCTACAATGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTATGAGTAGTCCTATCCTGCACTGGACCTTGTATGCTACAATGGT  50

seq1  GACCTGCTAGATAAGACATGTTATAGGATCAATAAATGTATTCTTATTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGCTAGATAAGACATGTTATAGGATCAATAAATGTATTCTTATTGG  100

seq1  AAATGAGGCCATTACCATGGGAGGCAAGCATGCTTGGTATTGTAATCTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAGGCCATTACCATGGGAGGCAAGCATGCTTGGTATTGTAATCTAA  150

seq1  ATCAGAAATCCAATATTGGGAAGGTCCAATGCCCCACGTTCAAACTTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAAATCCAATATTGGGAAGGTCCAATGCCCCACGTTCAAACTTGCT  200

seq1  ATAATCTCTCTGCTAAGTGAGCAGTGGTTAACATTTACACCTATAGCCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCTCTCTGCTAAGTGAGCAGTGGTTAACATTTACACCTATAGCCTA  250

seq1  GACTTGTGATGCTCTCAACCTTCATCACAGAAGCTTCTTTATTCGGTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGTGATGCTCTCAACCTTCATCACAGAAGCTTCTTTATTCGGTGAG  300

seq1  GCAGAGTACATGCAGTGTGTCAGAATTGGCCAAACTGCTTTGGAGAAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGTACATGCAGTGTGTCAGAATTGGCCAAACTGCTTTGGAGAAGTG  350

seq1  TTTATGGGCTGAGCCCTAAAGGAGACATCTATATCAACGTCTTCCTTTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGGGCTGAGCCCTAAAGGAGACATCTATATCAACGTCTTCCTTTCC  400

seq1  ATGCCACCAGCAAGTCTCAGGGAATAGCAGGGAAGAGAAAATAAAAAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCACCAGCAAGTCTCAGGGAATAGCAGGGAAGAGAAAATAAAAAAGG  450

seq1  TAGCACCAGAGAAGAAGGAAGGCTTTGTTAAATTCTGCCTTCTAGACTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACCAGAGAAGAAGGAAGGCTTTGTTAAATTCTGCCTTCTAGACTTC  500

seq1  TAGACAAGACGAATTTTTTTTAGAGTTTAGTTCATTTTAGAAACCATTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACAAGACGAATTTTTTTTAGAGTTTAGTTCATTTTAGAAACCATTAT  550

seq1  TAGGTGACAGCTGCTGAAAAAGTGAGATTCACTTCTTTATTGAGTGTGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGACAGCTGCTGAAAAAGTGAGATTCACTTCTTTATTGAGTGTGTG  600

seq1  GCTATTGTTGGATTTTCTGATTCCAGTGCATGGCCTACAACCATGCACCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTGTTGGATTTTCTGATTCCAGTGCATGGCCTACAACCATGCACCT  650

seq1  GTGGACTGTTAATTAGTAAGGTAAGAAGTTATCATGGGACATGATAGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGACTGTTAATTAGTAAGGTAAGAAGTTATCATGGGACATGATAGAAA  700

seq1  TTTGAGTAGCAGTAGGGGCAGATAGGTTCATATATCATTTGATGTATATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGTAGCAGTAGGGGCAGATAGGTTCATATATCATTTGATGTATATA  750

seq1  TGGTACTAAAGAAAAAGTCATATTATTAAGAAAGTTAATCAGTAAACAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTACTAAAGAAAAAGTCATATTATTAAGAAAGTTAATCAGTAAACAGA  800

seq1  TTTCTACCAGAATGTAGATAAAAAATAAACTTGAGATTCACACAACACAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTACCAGAATGTAGATAAAAAATAAACTTGAGATTCACACAACACAC  850

seq1  CTTTAAATGGAAGGAAAGCATTCATATGTATGAATATATAAACATGTACT  900
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CTTTAAATGGAAGGAAAGCATTCATATGTATG-ATATATAAACATGTACT  899

seq1  TATATTTATAAATAACTGTAAATAATATAAGCTAACAACAATAAAAATGT  950
      ||||||||||||||||||| |||||||||||||||||||||| |||||||
seq2  TATATTTATAAATAACTGT-AATAATATAAGCTAACAACAAT-AAAATGT  947

seq1  TAAATGAATATCTGTTATACTCAGACTAATTGTATCTGTCATGAGCATTC  1000
      | |||||| |||||||||||||||||| ||||||||||||||||||||||
seq2  T-AATGAA-ATCTGTTATACTCAGACT-ATTGTATCTGTCATGAGCATTC  994

seq1  CCTCACATTACACCATCTTAAGTTGTTGACGGTCTAGTGCCCTTCCCATG  1050
      ||||| ||||||||||| |||| |  |||||||||||||||  ||| |||
seq2  CCTCAAATTACACCATCCTAAGGTTGTGACGGTCTAGTGCC--TCCAATG  1042

seq1  TTAGAACACACCA-TCCATAGATG-TATGCAATACTAAGGCACTTTTGGT  1098
      |  |||| ||||| |||||||| | ||||||||||||| ||| |||||||
seq2  T--GAAC-CACCATTCCATAGAAGTTATGCAATACTAA-GCA-TTTTGGT  1087

seq1  CA-ACTCCT-CAACTATATAT  1117
      || |||||| ||| |||||  
seq2  CACACTCCTCCAAATATAT--  1106

seq1: chr3_90660619_90660896
seq2: B6Ng01-107G09.g_763_1058 (reverse)

seq1  GAGAGGCCCTTGGTCTTGTGAAGATTATATTCCCCAGTACAGGGGAACAC  50
      ||||||||| |||||   || | | ||   | | ||||||||||||||||
seq2  GAGAGGCCC-TGGTC---TGCAAACTAATATGCTCAGTACAGGGGAACAC  46

seq1  CAGGGCCAAGAAATTGGAGTGGGTGGGCTGGAGAGCAGAGCGGGAGGAGG  100
      ||||||| |||| | ||||||               || |   |||||||
seq2  CAGGGCC-AGAAGTAGGAGTG---------------AGTGTTAGAGGAGG  80

seq1  TTATAGGGGACTTTAGGGATAGCATTTGAAATGTAAATGAAGAAAATATC  150
       |||||||||||||  |||||||| ||||||||||||||||||| ||| |
seq2  GTATAGGGGACTTTGAGGATAGCA-TTGAAATGTAAATGAAGAACATACC  129

seq1  TAA---AAAAAATGTCCGGGACTACCCAATGTATACTATGTAAGTTT---  194
      |||   |||||||      ||      || || ||  |  ||| |||   
seq2  TAATTTAAAAAAT-----TGA-----AAAAGT-TA--AAATAATTTTGAA  166

seq1  ATATTTAAATAAGAAGTA---TCAAATAAGA-----------TCTCATAT  230
      | | ||||| || ||| |   | ||| ||||            | || | 
seq2  AAAGTTAAAAAAAAAGAATGTTAAAAAAAGAAACACAAGTAGACACAGAG  216

seq1  A---ATAAAATTGTG-----------TTCAAATTAACAAAAA--------  258
      |   | | | ||| |           |||| ||  |||||||        
seq2  ACACACATATTTGCGCACACAGAAACTTCATATCCACAAAAATAGAAATC  266

seq1  --AAT--------AAAAGACTTAAAAGAAA  278
        |||        |||||||||||||||||
seq2  ATAATACATAACCAAAAGACTTAAAAGAAA  296