BAC Information

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BAC

Clone NameB6Ng01-107K06
Chromosome6 (Build37)
Map Location 133,801,760 - 133,802,933
singlet/doubletsinglet
Overlap geneKap
Upstream geneTas2r116, Tas2r110, Tas2r113, Tas2r142-ps5, Tas2r125, Tas2r146-ps1, Tas2r129, Tas2r131, Tas2r109, EG667992, LOC100043634, Tas2r140, LOC668002, Tas2r141-ps4, 2700089E24Rik, LOC630618, 5530400C23Rik, EG545884, EG626372, LOC100043649, LOC100043653, EG545886, LOC622962
Downstream geneLOC100043655, LOC100043656, LOC668063, Etv6, LOC100043660, Bcl2l14, Lrp6, Mansc1, Loh12cr1, LOC100043884, Dusp16, Crebl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-107K06.bB6Ng01-107K06.g
ACCDH915048DH915049
length1,1651,060
definitionDH915048|Mus musculus domesticus DNA, BAC clone: B6Ng01-107K06, 5' end.DH915049|Mus musculus domesticus DNA, BAC clone: B6Ng01-107K06, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttccagaaagccggaggagactgtctcaacatcagtagagaact
ctgggaagacagaatagaagtaggtatggtcagcagctgggaaagaaagc
aggctttccagcaggaagacacaagatggggacccagaaacatctgccca
gacctctaaaccacacactcacttaccagaattctgtttgtttgcggctg
gcgtgaagtccatgatctgctcagagtcagtgcttaaatcatcatctgta
taatcctctagaggagcttttgtccctctgtatgatcccagttggtcaaa
gactgagtttagtaggtcaatgattgaattctgtagttctttattgattg
aaactagaaggtcaacagaattgttttatagttattcactgggagggtct
attaggttattgattgcttctggaagagattttgttgagtctacttggtt
ataactggttagacctagtcgataactagcttcttctggtaggtcattac
tagtagattctaataagtcagtatccaattcgaaagaagcccaacagaaa
ataacatctcaagtcacgtccaatgagcatgtctctgtcatcatcacccc
ttcctgttctctgccttcagtgcaagggaaggtacaaagtgattgtcacc
acagtccctttcagtagctaaagtctttgggccaacttgcttggagtata
agtgctcagagcctgctcctgccttctttgaggcgccagtttaggaagga
gcatctgtgttgtagctctttgtgtgctgagaagactagagcagaataaa
aactcaagacccatctctataatgcttccagatttataataatctataat
cttccagattccaaaggtcacacacatgcacacacacacacacacacaca
cacacacacacacacacacacacgcaaatataccattaccagtggttaaa
tctaaagaagtcactggtcctgtgtaaagctggaatgaaatcaatcctaa
gtgctccattccaactactttcatttaatagcctgtgtctatgacccact
ttcagcatatctcaaaacactccctctgaatgccacgtggtgagtaatct
tcagaaccctcacaatcctgagtctatgcccacagccaatctcccaaaga
acgcctgtcactttg
gaattcagtaagaatgttacctgttcagtaatactcaaattcacttctag
tagagacagtgaaactaattaggcattacaatttacttgaacagagctag
aaaagctcagggctagtctgcatagtaattacttaggacaatagctgagt
cgcacttaaacactggaatacacaatggcctaggaaataggtgggttgta
gtatgaaagggttagtagaacagaattcccctggtgcaagtttttcacta
ggcccagaggaatagcataatcaggtatttactaaaggacccctggtggt
gggtttaacaatagactagcattgtatcagaccattcacctggctcctgt
gtttagctgatcttaattaagggttgttcctattctcagttgtaaacaag
gcctggctcccgtcatctttttatgtatgcattttctttgttttctgtta
agaaccagtgtacctgacggatgtatttgcctagccttcttggttttctt
ctgtatttaaaagcctggtgtttgcttggagaaaatacattcagatacag
cactcccttctgtctgtgtccgtttgtcacctttttcgtagccaactcca
tgcccgcctataatgggaaccacaaaattttttctgcgaattgagggagg
cctattgggaccagtctgcggcacactatgatgataatggatgaaacttc
tgaaactgtaagccaggcccagttaaatgttttccttttataacagttgc
cttggtcatggtgtctcttcagagcaacagaaaataaaactaatacatat
tttactgaattgatccatgagcatgggagatctttccatcttctgatatc
atttcagtttcttttttcaatgacttgaagttttaatcatacaagtcttc
acttgtttgctagagttacccaaaatatctatactatttaagggcattat
ggatgacatttccctcttctttctcagaaactttgtcattatgtatagga
gggtactaatttgtggctaatttgtatgtaactactgggcgaatggttat
caactgtaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_133801760_133802933
seq2: B6Ng01-107K06.b_41_1205

seq1  GAATTCTTCCAGAAAGCCGGAGGAGACTGTCTCAACATCAGTAGAGAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCAGAAAGCCGGAGGAGACTGTCTCAACATCAGTAGAGAACT  50

seq1  CTGGGAAGACAGAATAGAAGTAGGTATGGTCAGCAGCTGGGAAAGAAAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAAGACAGAATAGAAGTAGGTATGGTCAGCAGCTGGGAAAGAAAGC  100

seq1  AGGCTTTCCAGCAGGAAGACACAAGATGGGGACCCAGAAACATCTGCCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTTCCAGCAGGAAGACACAAGATGGGGACCCAGAAACATCTGCCCA  150

seq1  GACCTCTAAACCACACACTCACTTACCAGAATTCTGTTTGTTTGCGGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCTAAACCACACACTCACTTACCAGAATTCTGTTTGTTTGCGGCTG  200

seq1  GCGTGAAGTCCATGATCTGCTCAGAGTCAGTGCTTAAATCATCATCTGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGAAGTCCATGATCTGCTCAGAGTCAGTGCTTAAATCATCATCTGTA  250

seq1  TAATCCTCTAGAGGAGCTTTTGTCCCTCTGTATGATCCCAGTTGGTCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCTCTAGAGGAGCTTTTGTCCCTCTGTATGATCCCAGTTGGTCAAA  300

seq1  GACTGAGTTTAGTAGGTCAATGATTGAATTCTGTAGTTCTTTATTGATTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGAGTTTAGTAGGTCAATGATTGAATTCTGTAGTTCTTTATTGATTG  350

seq1  AAACTAGAAGGTCAACAGAATTGTTTTATAGTTATTCACTGGGAGGGTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAGAAGGTCAACAGAATTGTTTTATAGTTATTCACTGGGAGGGTCT  400

seq1  ATTAGGTTATTGATTGCTTCTGGAAGAGATTTTGTTGAGTCTACTTGGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGTTATTGATTGCTTCTGGAAGAGATTTTGTTGAGTCTACTTGGTT  450

seq1  ATAACTGGTTAGACCTAGTCGATAACTAGCTTCTTCTGGTAGGTCATTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTGGTTAGACCTAGTCGATAACTAGCTTCTTCTGGTAGGTCATTAC  500

seq1  TAGTAGATTCTAATAAGTCAGTATCCAATTCGAAAGAAGCCCAACAGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAGATTCTAATAAGTCAGTATCCAATTCGAAAGAAGCCCAACAGAAA  550

seq1  ATAACATCTCAAGTCACGTCCAATGAGCATGTCTCTGTCATCATCACCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACATCTCAAGTCACGTCCAATGAGCATGTCTCTGTCATCATCACCCC  600

seq1  TTCCTGTTCTCTGCCTTCAGTGCAAGGGAAGGTACAAAGTGATTGTCACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGTTCTCTGCCTTCAGTGCAAGGGAAGGTACAAAGTGATTGTCACC  650

seq1  ACAGTCCCTTTCAGTAGCTAAAGTCTTTGGGCCAACTTGCTTGGAGTATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCCCTTTCAGTAGCTAAAGTCTTTGGGCCAACTTGCTTGGAGTATA  700

seq1  AGTGCTCAGAGCCTGCTCCTGCCTTCTTTGAGGCGCCAGTTTAGGAAGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTCAGAGCCTGCTCCTGCCTTCTTTGAGGCGCCAGTTTAGGAAGGA  750

seq1  GCATCTGTGTTGTAGCTCTTTGTGTGCTGAGAAGACTAGAGCAGAATAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTGTGTTGTAGCTCTTTGTGTGCTGAGAAGACTAGAGCAGAATAAA  800

seq1  AACTCAAGACCCATCTCTATAATGCTTCCAGATTTATAATAATCTATAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAAGACCCATCTCTATAATGCTTCCAGATTTATAATAATCTATAAT  850

seq1  CTTCCAGATTCCAAAGGTCACACACATGCACACACACACACACACACACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAGATTCCAAAGGTCACACACATGCACACACACACACACACACACA  900

seq1  CACACACACACACACACACACACGCAAATATTACCATTACCAGTGGTTAA  950
      |||||||||||||||||||||||||||||| ||||||||||||||||| |
seq2  CACACACACACACACACACACACGCAAATA-TACCATTACCAGTGGTT-A  948

seq1  AATCTAAAGAAGTCACTGGTCCTGTGTATAAGCTGGAATGAAATCAATCC  1000
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AATCTAAAGAAGTCACTGGTCCTGTGTA-AAGCTGGAATGAAATCAATCC  997

seq1  TAAGGTGCTCCATTCCAACTACTTTTCATTTAATAGCCTGTGTCTATGAC  1050
      ||| |||||||||||||||||| |||||||||||||||||||||||||||
seq2  TAA-GTGCTCCATTCCAACTAC-TTTCATTTAATAGCCTGTGTCTATGAC  1045

seq1  CCACTTTCAGCATATCTCAAAACACT-CCTCTGAAATGCCACGTGGTGAG  1099
      |||||||||||||||||||||||||| |||||| ||||||||||||||||
seq2  CCACTTTCAGCATATCTCAAAACACTCCCTCTG-AATGCCACGTGGTGAG  1094

seq1  TTATCTTCAGAACCCTCACAACCCTGAGGTCTATGGCACACAAGCCACAT  1149
      | ||||||||||||||||||| ||||| |||||| || ||| ||||| ||
seq2  TAATCTTCAGAACCCTCACAATCCTGA-GTCTAT-GCCCAC-AGCCA-AT  1140

seq1  CTCCCAAGGACAGCCTGTCACTTTG  1174
      ||||||| ||  |||||||||||||
seq2  CTCCCAAAGAACGCCTGTCACTTTG  1165