BAC Information

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BAC

Clone NameB6Ng01-108O02
Chromosome6 (Build37)
Map Location 34,021,549 - 34,186,946
singlet/doubletdoublet
Overlap geneLrguk, Slc35b4
Upstream geneGm1401, Exoc4
Downstream geneAkr1b3, Akr1b8, LOC664942, 2310005E10Rik, Akr1b7, Bpgm, LOC100039184, Cald1, Agbl3, Tmem140, 3110062M04Rik, 9530020G05Rik, Stra8, 2010107G12Rik, Cnot4, Nup205
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-108O02.bB6Ng01-108O02.g
ACCDH915947DH915948
length1,1561,041
definitionDH915947|Mus musculus domesticus DNA, BAC clone: B6Ng01-108O02, 5' end.DH915948|Mus musculus domesticus DNA, BAC clone: B6Ng01-108O02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,021,549 - 34,022,711)(34,185,900 - 34,186,946)
sequence
gaattcatttataaaccaacattctcacagcacactttgaagtatgcaag
agaagctttaaaatgttccaactggtgtttaataatcatacaggtttctg
gggtgcagtgtggcggtccactcacacatagaacacggagtgatctagtc
ctgtgtctctgtgttgggaccctaatcgaatatgctgttacacatttact
tctcatgcattcccatctgtgaaaggcatcttacacccaagtcttgctat
tcagggaggtgaagcatcttattcaaaataaacccctcagttacggcttt
aaagtcaggccatcctaacagcagtcagggaatacagaggaatctgttcc
taagcaattgacattttattactgtaagacaagttcagagtgatcccaac
taatacaaaagaacacaataaataatcaacccataatgaaatcataagaa
aacgtcaaatgtcattattttcagtaatgaaactctttggctttagtaga
gaagggtttggagtcttagatgagctgcctatgtctgtgggctcagcctc
gacaccagaggataatcctgccttcccgcttatctcacggagattagtga
gatctgcacatttgaagagctttataaattacaggacacattctgtagct
tggttgttaattgaagggggcctgacagacgtgagaatgcagagccctgt
gttggggtctggaatgcagggtcatggtggcaagtgttgagaggctccta
aggatagaagaatggcacttgctgacctgggaaagaggaaggccattcaa
tagtcctcttgttttaaacagaccaagcccgagtactggttcttcgtgat
atatatgctgctgcgactgacagagttagaccagcagaagattaaggtag
aagaaaaggtatgtaaccatgttgcctcacgtgttttctggttgagacat
tcaaaagtgtcagtgcttacagcagacatgtaaccatcagtgagaagcag
agccgtatgcaaattaaattcttcatttaggatcaacttccttgtcctag
gatttgccagctggaccctctgtaagctgggccaattacagtgtttccat
gggtacatggagtctggcagcgaaggaggttcagtacctcctgctgctca
agctgg
gaattcattattccaaagtctacttggagatcctatgactaactagacat
cgtccagggatgtgagccctctggtgtgtctgtagagaaaggtgaggagg
atacagtattcattagggccataggtgtggccttcattcattctcacaat
cgccatgcatgggttgtgggttaggcattattgttctaatttcataaatg
agtcttagaaagatgaaaataaagtcaccagttatggagattagattcca
tctcagctggagtttaaatggaacgagtccacagaggaggcctcacacac
ctgctctccagacaccaagggaagggtatctgcgtgtttatccacctttg
tgactcagcaccctccctagctctccatcttctcagaggtggaactccca
aaccccagcacggtctgaaatcttcccatactagcccagggtgattcatc
tctccacagtctaatcctatttccctttaccctctgagctaatgtgtggg
tgaaaatacccaagagccagccagatcttggactataggctagtggaaga
ttacaaaactgaacccaggtgacttggattctagggcaagttttatactt
ccatgattgtgcttctgtcttcctgggtcaacctttcacctggaaatgga
ggtgtctggtgctgatgcatttctgcatcctctccagcttgtatttttct
aattcttctcatatatatgaaattatcttaaaactttgttgttgttgttg
ttgttattattattattattactattattattattattatttgtgtggga
atacttgcagagatcgaagggacagcttcatggagtcggctctctccttc
ggcctttacttgggctcaagggtggagctcaagttgtcagtttgcagagc
aagccaacttgttggtccccaagagaaaattgtttgaatattgaaacatc
acggtagcagcggcacatatgtggagagaaaagattagcaggaaaggtat
caccttgccttgtgcacaatgtcagattaaaggttcagtca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_34021549_34022711
seq2: B6Ng01-108O02.b_46_1201

seq1  GAATTCATTTATAAACCAACATTCTCACAGCACACTTTGAAGTATGCAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTATAAACCAACATTCTCACAGCACACTTTGAAGTATGCAAG  50

seq1  AGAAGCTTTAAAATGTTCCAACTGGTGTTTAATAATCATACAGGTTTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCTTTAAAATGTTCCAACTGGTGTTTAATAATCATACAGGTTTCTG  100

seq1  GGGTGCAGTGTGGCGGTCCACTCACACATAGAACACGGAGTGATCTAGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGCAGTGTGGCGGTCCACTCACACATAGAACACGGAGTGATCTAGTC  150

seq1  CTGTGTCTCTGTGTTGGGACCCTAATCGAATATGCTGTTACACATTTACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTCTCTGTGTTGGGACCCTAATCGAATATGCTGTTACACATTTACT  200

seq1  TCTCATGCATTCCCATCTGTGAAAGGCATCTTACACCCAAGTCTTGCTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATGCATTCCCATCTGTGAAAGGCATCTTACACCCAAGTCTTGCTAT  250

seq1  TCAGGGAGGTGAAGCATCTTATTCAAAATAAACCCCTCAGTTACGGCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGAGGTGAAGCATCTTATTCAAAATAAACCCCTCAGTTACGGCTTT  300

seq1  AAAGTCAGGCCATCCTAACAGCAGTCAGGGAATACAGAGGAATCTGTTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCAGGCCATCCTAACAGCAGTCAGGGAATACAGAGGAATCTGTTCC  350

seq1  TAAGCAATTGACATTTTATTACTGTAAGACAAGTTCAGAGTGATCCCAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCAATTGACATTTTATTACTGTAAGACAAGTTCAGAGTGATCCCAAC  400

seq1  TAATACAAAAGAACACAATAAATAATCAACCCATAATGAAATCATAAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACAAAAGAACACAATAAATAATCAACCCATAATGAAATCATAAGAA  450

seq1  AACGTCAAATGTCATTATTTTCAGTAATGAAACTCTTTGGCTTTAGTAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTCAAATGTCATTATTTTCAGTAATGAAACTCTTTGGCTTTAGTAGA  500

seq1  GAAGGGTTTGGAGTCTTAGATGAGCTGCCTATGTCTGTGGGCTCAGCCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGTTTGGAGTCTTAGATGAGCTGCCTATGTCTGTGGGCTCAGCCTC  550

seq1  GACACCAGAGGATAATCCTGCCTTCCCGCTTATCTCACGGAGATTAGTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCAGAGGATAATCCTGCCTTCCCGCTTATCTCACGGAGATTAGTGA  600

seq1  GATCTGCACATTTGAAGAGCTTTATAAATTACAGGACACATTCTGTAGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGCACATTTGAAGAGCTTTATAAATTACAGGACACATTCTGTAGCT  650

seq1  TGGTTGTTAATTGAAGGGGGCCTGACAGACGTGAGAATGCAGAGCCCTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGTTAATTGAAGGGGGCCTGACAGACGTGAGAATGCAGAGCCCTGT  700

seq1  GTTGGGGTCTGGAATGCAGGGTCATGGTGGCAAGTGTTGAGAGGCTCCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGGGTCTGGAATGCAGGGTCATGGTGGCAAGTGTTGAGAGGCTCCTA  750

seq1  AGGATAGAAGAATGGCACTTGCTGACCTGGGAAAGAGGAAGGCCATTCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATAGAAGAATGGCACTTGCTGACCTGGGAAAGAGGAAGGCCATTCAA  800

seq1  TAGTCCTCTTGTTTTAAACAGACCAAGCCCGAGTACTGGTTCTTCGTGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCCTCTTGTTTTAAACAGACCAAGCCCGAGTACTGGTTCTTCGTGAT  850

seq1  ATATATGCTGCTGCGACTGACAGAGTTAGACCAGCAGAAGATTAAGGTAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATGCTGCTGCGACTGACAGAGTTAGACCAGCAGAAGATTAAGGTAG  900

seq1  AAGAAAAGGTATGTAACCATGTTGCCTCACGTGTTTTCTGGTTGAGACAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAGGTATGTAACCATGTTGCCTCACGTGTTTTCTGGTTGAGACAT  950

seq1  TCAAAAGTGTCAGGTGCTTACAGCAGGACATGTAACCAATCAGTGAGAAG  1000
      |||||||||||| |||||||||||| ||||||||||| ||||||||||||
seq2  TCAAAAGTGTCA-GTGCTTACAGCA-GACATGTAACC-ATCAGTGAGAAG  997

seq1  CAGAGCCGTATGCAAATT-AATTCTTCATTTAGGATCAACTTCCTTGTCC  1049
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CAGAGCCGTATGCAAATTAAATTCTTCATTTAGGATCAACTTCCTTGTCC  1047

seq1  TAGGATTTGCCAGCTGAACCCTCTGTTAAGCTGGG-CAATTACAGGTGTT  1098
      |||||||||||||||| |||||||| ||||||||| |||||||||   ||
seq2  TAGGATTTGCCAGCTGGACCCTCTG-TAAGCTGGGCCAATTACAGTGTTT  1096

seq1  CCATGGGTACAATGGGAAGTCTGGCAGCG-AGGA-GTCCAGGAACCCCTC  1146
      |||||||||| ||||  |||||||||||| |||| || ||| |   ||||
seq2  CCATGGGTAC-ATGG--AGTCTGGCAGCGAAGGAGGTTCAGTA---CCTC  1140

seq1  CTGCTGCTCATGGCTGG  1163
      ||||||||||  |||||
seq2  CTGCTGCTCA-AGCTGG  1156

seq1: chr6_34185900_34186946
seq2: B6Ng01-108O02.g_66_1106 (reverse)

seq1  TGACTGAAACCTTTATCTGACATTTGTGCACAAGGCAAAGTGAATAACCC  50
      |||||||| | || |||||||| ||||||||||||||| ||| |||  ||
seq2  TGACTGAACCTTTAATCTGACA-TTGTGCACAAGGCAAGGTG-ATA--CC  46

seq1  TTTCCTGCTTATCTTTTCTCCTCCACATATGTGCCCGCTGCCTACCGTGA  100
      ||||||||| ||||||||| ||||||||||||| |||||| |||||||||
seq2  TTTCCTGCTAATCTTTTCT-CTCCACATATGTG-CCGCTG-CTACCGTGA  93

seq1  TGTTTC-ATATTCAAACATTTTTCTCTTGGGGACCAACAAGTTGGCTTGC  149
      |||||| ||||||||||| |||||||||||||||||||||||||||||||
seq2  TGTTTCAATATTCAAACAATTTTCTCTTGGGGACCAACAAGTTGGCTTGC  143

seq1  TCTGCAAACCTGACAACTTGAGCTCCACCCTTGAGCCCAAGTAAAGGCCG  199
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAAA-CTGACAACTTGAGCTCCACCCTTGAGCCCAAGTAAAGGCCG  192

seq1  AAGGAGAGAGCCGACTCCATGAAGCTGT-CCTTCGATCTCTGCAAGTATT  248
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AAGGAGAGAGCCGACTCCATGAAGCTGTCCCTTCGATCTCTGCAAGTATT  242

seq1  CCCACACAAATAATAATAATAATAATAGTAATAATAATAATAATAACAAC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACACAAATAATAATAATAATAATAGTAATAATAATAATAATAACAAC  292

seq1  AACAACAACAACAAAGTTTTAAGATAATTTCATATATATGAGAAGAATTA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACAACAACAAAGTTTTAAGATAATTTCATATATATGAGAAGAATTA  342

seq1  GAAAAATACAAGCTGGAGAGGATGCAGAAATGCATCAGCACCAGACACCT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATACAAGCTGGAGAGGATGCAGAAATGCATCAGCACCAGACACCT  392

seq1  CCATTTCCAGGTGAAAGGTTGACCCAGGAAGACAGAAGCACAATCATGGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTCCAGGTGAAAGGTTGACCCAGGAAGACAGAAGCACAATCATGGA  442

seq1  AGTATAAAACTTGCCCTAGAATCCAAGTCACCTGGGTTCAGTTTTGTAAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATAAAACTTGCCCTAGAATCCAAGTCACCTGGGTTCAGTTTTGTAAT  492

seq1  CTTCCACTAGCCTATAGTCCAAGATCTGGCTGGCTCTTGGGTATTTTCAC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCACTAGCCTATAGTCCAAGATCTGGCTGGCTCTTGGGTATTTTCAC  542

seq1  CCACACATTAGCTCAGAGGGTAAAGGGAAATAGGATTAGACTGTGGAGAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACATTAGCTCAGAGGGTAAAGGGAAATAGGATTAGACTGTGGAGAG  592

seq1  ATGAATCACCCTGGGCTAGTATGGGAAGATTTCAGACCGTGCTGGGGTTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATCACCCTGGGCTAGTATGGGAAGATTTCAGACCGTGCTGGGGTTT  642

seq1  GGGAGTTCCACCTCTGAGAAGATGGAGAGCTAGGGAGGGTGCTGAGTCAC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTTCCACCTCTGAGAAGATGGAGAGCTAGGGAGGGTGCTGAGTCAC  692

seq1  AAAGGTGGATAAACACGCAGATACCCTTCCCTTGGTGTCTGGAGAGCAGG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTGGATAAACACGCAGATACCCTTCCCTTGGTGTCTGGAGAGCAGG  742

seq1  TGTGTGAGGCCTCCTCTGTGGACTCGTTCCATTTAAACTCCAGCTGAGAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGAGGCCTCCTCTGTGGACTCGTTCCATTTAAACTCCAGCTGAGAT  792

seq1  GGAATCTAATCTCCATAACTGGTGACTTTATTTTCATCTTTCTAAGACTC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCTAATCTCCATAACTGGTGACTTTATTTTCATCTTTCTAAGACTC  842

seq1  ATTTATGAAATTAGAACAATAATGCCTAACCCACAACCCATGCATGGCGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATGAAATTAGAACAATAATGCCTAACCCACAACCCATGCATGGCGA  892

seq1  TTGTGAGAATGAATGAAGGCCACACCTATGGCCCTAATGAATACTGTATC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAGAATGAATGAAGGCCACACCTATGGCCCTAATGAATACTGTATC  942

seq1  CTCCTCACCTTTCTCTACAGACACACCAGAGGGCTCACATCCCTGGACGA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCACCTTTCTCTACAGACACACCAGAGGGCTCACATCCCTGGACGA  992

seq1  TGTCTAGTTAGTCATAGGATCTCCAAGTAGACTTTGGAATAATGAATTC  1047
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTAGTTAGTCATAGGATCTCCAAGTAGACTTTGGAATAATGAATTC  1041