BAC Information

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BAC

Clone NameB6Ng01-108P08
Chromosome6 (Build37)
Map Location 142,954,718 - 143,088,346
singlet/doubletdoublet
Overlap gene5730419I09Rik, Etnk1
Upstream geneEG625716, Slco1a6, Slco1a5, Iapp, BC027061, Recql, Golt1b, B230216G23Rik, Gys2, Ldhb, Kcnj8, Abcc9, 5330439B14Rik, Cmas, Gm766, EG665037, St8sia1, LOC665056
Downstream geneD6Ertd474e, Sox5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-108P08.bB6Ng01-108P08.g
ACCDH916003DH916004
length818968
definitionDH916003|Mus musculus domesticus DNA, BAC clone: B6Ng01-108P08, 5' end.DH916004|Mus musculus domesticus DNA, BAC clone: B6Ng01-108P08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(142,954,718 - 142,955,535)(143,087,388 - 143,088,346)
sequence
gaattcatggaattagaatcaagggcaatgagaacggccggaggaggaac
aaggggacagcaaggcttactgacatcactacattgtcacatctgctctc
gaccagcaagaacgacacgaccaccaggtcttctaacagcagtttattca
gcaagcttcaatcgttatctctctcgcttcatctttttctctctcgaacc
ccgggtctctctctcatatatactctcagcccccagccactcacagcagg
ccacgtcacctcaccaggcatgcagcttcagccaatcagggcggcagggg
cacgtctccaccaaatatggacttgtttataccgccagcatcatggtgca
cctgtggcttattttcaggtgtatgaggaagtcaggtgcaagtcatgaga
cttggctgcagttccgggcgccatcttggggctgctgccacacccgctcc
tcacactacataactactctcgttcacctgatgtatcttgtaatctatat
gaaggtggatcacaataaaagtatatactgaaaagtcgagagcaaccatg
agcactcttttaagaggagttataacttactctacataggggagatataa
attcagaaaaaaaaaactgtcctaaaggaagacagaaaatacatgtatgt
atatgtatatgcgtatgtgtatatgtatatatgtatgtgtgtatatgcac
atgtgtatatgcatgcatttaaaaaccaggaaacattcagaccccctagc
accaagaatgtatgttagcggttctgtgaccctgttccaggacctggccg
accacaaaagttatatta
gaattctcatcctcctgttcttcctactactaaaagtagtggggctactg
tgatcttgaaccccacggtgacctccatcctcccctacttctcactgact
ggcatgttgacaaggactgtgctgagtcaacagaagtggaaatggtgggg
attagaagaggaatggggaaccaagaactcagagtagagtactgcttagc
ctcttgcagcgaggccagtacctgcagtgagaccagtaccttcagtgagg
gccattgtgtgaagtaagggccagtgcctacagtgaggccagtgcttgca
gtgggatatcagaacacaaatgaggaaccatctacccaagcacatatctt
cagtactttaaagtaagttgtgcttgagaacttgaaaatgagacagcata
gtaatcagtgcctctttaaaacacaaagagccaagttaggtggtggtgat
acatgcctttaattccagcactcgggaggcagaggaaggcagatcgttgt
gagttcaagaccagccttgtctacagaaccagttgtaggacagccagatc
tatagactgtgtttcagaaggaaaaaaacaaaaacaaccaaaaagccaca
cacgaagagaccatagcccaaactactccaatccagagggcaaataaagc
agttttctttcttttttcttttgtaccttccagctttctttctttctctc
tttctctctttctctttctttctttctttctttctttctttctttctttc
tttctttctttctttctttctcttccttcctttcttgctctctctgtctt
ctttcctcccttcttctttccttccctcatgtccttcctcccttcatcct
tctttctcttcttcttccttccctccctcccttctttcttccttccttcc
ttccttccttccttccttccttctcctttctccctcttctgctttcttct
ttgctgttccctatctcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_142954718_142955535
seq2: B6Ng01-108P08.b_43_860

seq1  GAATTCATGGAATTAGAATCAAGGGCAATGAGAACGGCCGGAGGAGGAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGGAATTAGAATCAAGGGCAATGAGAACGGCCGGAGGAGGAAC  50

seq1  AAGGGGACAGCAAGGCTTACTGACATCACTACATTGTCACATCTGCTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGACAGCAAGGCTTACTGACATCACTACATTGTCACATCTGCTCTC  100

seq1  GACCAGCAAGAACGACACGACCACCAGGTCTTCTAACAGCAGTTTATTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGCAAGAACGACACGACCACCAGGTCTTCTAACAGCAGTTTATTCA  150

seq1  GCAAGCTTCAATCGTTATCTCTCTCGCTTCATCTTTTTCTCTCTCGAACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCTTCAATCGTTATCTCTCTCGCTTCATCTTTTTCTCTCTCGAACC  200

seq1  CCGGGTCTCTCTCTCATATATACTCTCAGCCCCCAGCCACTCACAGCAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGGTCTCTCTCTCATATATACTCTCAGCCCCCAGCCACTCACAGCAGG  250

seq1  CCACGTCACCTCACCAGGCATGCAGCTTCAGCCAATCAGGGCGGCAGGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGTCACCTCACCAGGCATGCAGCTTCAGCCAATCAGGGCGGCAGGGG  300

seq1  CACGTCTCCACCAAATATGGACTTGTTTATACCGCCAGCATCATGGTGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTCTCCACCAAATATGGACTTGTTTATACCGCCAGCATCATGGTGCA  350

seq1  CCTGTGGCTTATTTTCAGGTGTATGAGGAAGTCAGGTGCAAGTCATGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGGCTTATTTTCAGGTGTATGAGGAAGTCAGGTGCAAGTCATGAGA  400

seq1  CTTGGCTGCAGTTCCGGGCGCCATCTTGGGGCTGCTGCCACACCCGCTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCTGCAGTTCCGGGCGCCATCTTGGGGCTGCTGCCACACCCGCTCC  450

seq1  TCACACTACATAACTACTCTCGTTCACCTGATGTATCTTGTAATCTATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACTACATAACTACTCTCGTTCACCTGATGTATCTTGTAATCTATAT  500

seq1  GAAGGTGGATCACAATAAAAGTATATACTGAAAAGTCGAGAGCAACCATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTGGATCACAATAAAAGTATATACTGAAAAGTCGAGAGCAACCATG  550

seq1  AGCACTCTTTTAAGAGGAGTTATAACTTACTCTACATAGGGGAGATATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTCTTTTAAGAGGAGTTATAACTTACTCTACATAGGGGAGATATAA  600

seq1  ATTCAGAAAAAAAAAACTGTCCTAAAGGAAGACAGAAAATACATGTATGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGAAAAAAAAAACTGTCCTAAAGGAAGACAGAAAATACATGTATGT  650

seq1  ATATGTATATGCGTATGTGTATATGTATATATGTATGTGTGTATATGCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTATATGCGTATGTGTATATGTATATATGTATGTGTGTATATGCAC  700

seq1  ATGTGTATATGCATGCATTTAAAAACCAGGAAACATTCAGACCCCCTAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTATATGCATGCATTTAAAAACCAGGAAACATTCAGACCCCCTAGC  750

seq1  ACCAAGAATGTAGGTTAGCGGTTCAGTGACCCTGTTCCAGGACCTGGCCG  800
      |||||||||||| ||||||||||| |||||||||||||||||||||||||
seq2  ACCAAGAATGTATGTTAGCGGTTCTGTGACCCTGTTCCAGGACCTGGCCG  800

seq1  ACCACAAAAGTTAGATTA  818
      ||||||||||||| ||||
seq2  ACCACAAAAGTTATATTA  818

seq1: chr6_143087388_143088346
seq2: B6Ng01-108P08.g_70_1021 (reverse)

seq1  AAAGAAAGAAAGCAAGAAAGAGGGAGAAAGGAAGAAAGGAAGGAAGGAAG  50
      |||| |||||||||   |||||||||||||||   |||||||||||||||
seq2  AAAG-AAGAAAGCA--GAAGAGGGAGAAAGGA--GAAGGAAGGAAGGAAG  45

seq1  GAAGGAAGGAAGGAAGGAAGAAAAGAAGGGAGGGAGGGAAGGAAGAAAGA  100
      |||||||||||||||||||| |||||||||||||||||||||||| ||||
seq2  GAAGGAAGGAAGGAAGGAAG-AAAGAAGGGAGGGAGGGAAGGAAG-AAGA  93

seq1  AGAGAAAGAAGGATGAAGGGAGGAAGGACATGAGGGAAGGAAAGAAGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAGAAGGATGAAGGGAGGAAGGACATGAGGGAAGGAAAGAAGAAG  143

seq1  GGAGGAAAGAAGACAGAGAGAGCAAGAAAGGAAGGAAGAGAAAGAAAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAAAGAAGACAGAGAGAGCAAGAAAGGAAGGAAGAGAAAGAAAGAA  193

seq1  AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAA  243

seq1  AGAGAGAAAGAGAGAAAGAAAGAAAGCTGGAAGGTACAAAAGAAAAAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAAAGAGAGAAAGAAAGAAAGCTGGAAGGTACAAAAGAAAAAAGA  293

seq1  AAGAAAACTGCTTTATTTGCCCTCTGGATTGGAGTAGTTTGGGCTATGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAACTGCTTTATTTGCCCTCTGGATTGGAGTAGTTTGGGCTATGGT  343

seq1  CTCTTCGTGTGTGGCTTTTTGGTTGTTTTTGTTTTTTTCCTTCTGAAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCGTGTGTGGCTTTTTGGTTGTTTTTGTTTTTTTCCTTCTGAAACA  393

seq1  CAGTCTATAGATCTGGCTGTCCTACAACTGGTTCTGTAGACAAGGCTGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTATAGATCTGGCTGTCCTACAACTGGTTCTGTAGACAAGGCTGGT  443

seq1  CTTGAACTCACAACGATCTGCCTTCCTCTGCCTCCCGAGTGCTGGAATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAACTCACAACGATCTGCCTTCCTCTGCCTCCCGAGTGCTGGAATTA  493

seq1  AAGGCATGTATCACCACCACCTAACTTGGCTCTTTGTGTTTTAAAGAGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCATGTATCACCACCACCTAACTTGGCTCTTTGTGTTTTAAAGAGGC  543

seq1  ACTGATTACTATGCTGTCTCATTTTCAAGTTCTCAAGCACAACTTACTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATTACTATGCTGTCTCATTTTCAAGTTCTCAAGCACAACTTACTTT  593

seq1  AAAGTACTGAAGATATGTGCTTGGGTAGATGGTTCCTCATTTGTGTTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTACTGAAGATATGTGCTTGGGTAGATGGTTCCTCATTTGTGTTCTG  643

seq1  ATATCCCACTGCAAGCACTGGCCTCACTGTAGGCACTGGCCCTTACTTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCCACTGCAAGCACTGGCCTCACTGTAGGCACTGGCCCTTACTTCA  693

seq1  CACAATGGCCCTCACTGAAGGTACTGGTCTCACTGCAGGTACTGGCCTCG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATGGCCCTCACTGAAGGTACTGGTCTCACTGCAGGTACTGGCCTCG  743

seq1  CTGCAAGAGGCTAAGCAGTACTCTACTCTGAGTTCTTGGTTCCCCATTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAGAGGCTAAGCAGTACTCTACTCTGAGTTCTTGGTTCCCCATTCC  793

seq1  TCTTCTAATCCCCACCATTTCCACTTCTGTTGACTCAGCACAGTCCTTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTAATCCCCACCATTTCCACTTCTGTTGACTCAGCACAGTCCTTGT  843

seq1  CAACATGCCAGTCAGTGAGAAGTAGGGGAGGATGGAGGTCACCGTGGGGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATGCCAGTCAGTGAGAAGTAGGGGAGGATGGAGGTCACCGTGGGGT  893

seq1  TCAAGATCACAGTAGCCCCACTACTTTTAGTAGTAGGAAGAACAGGAGGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGATCACAGTAGCCCCACTACTTTTAGTAGTAGGAAGAACAGGAGGA  943

seq1  TGAGAATTC  959
      |||||||||
seq2  TGAGAATTC  952