BAC Information

Click to search

BAC

Clone NameB6Ng01-108P18
Chromosome6 (Build37)
Map Location 44,455,091 - 44,577,068
singlet/doubletdoublet
Overlap genenone
Upstream geneTpk1, LOC546897, LOC665779
Downstream geneLOC100040210, Cntnap2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-108P18.bB6Ng01-108P18.g
ACCDH916023DH916024
length1,095992
definitionDH916023|Mus musculus domesticus DNA, BAC clone: B6Ng01-108P18, 5' end.DH916024|Mus musculus domesticus DNA, BAC clone: B6Ng01-108P18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,455,091 - 44,456,206)(44,576,531 - 44,577,068)
sequence
gaattcaagtttctacagtcatagctctggccattgcattctttaactcg
aatttatccacagtattgccagtctctgatagactcaggtagcaaccaca
gtaatgtctgaagtagagatccttcagtttctactcttgctttctggtag
cttcagtaatagagtggggcttctaggaaagaacagtgaacaggttttta
aaattatttttatattatgcaaatgagtgttgacctacatttgtgtaagt
ttactaccagcatgcttgattcctgctaaggtcagaagactcgttttgat
cctcacctgtagctctaggcagttgtcatccccatatgggtgccgagagc
tgaacctaagtttctgctagaacagacagtagttgtaaacacaaatgcaa
atgcaaccttgggcactctcgaaaggttgttcggtgaatagacaagtggg
acagggattgttaatgtgcattaggaattaatgaatctgtagtcttaata
tacccaattgtgaaagaggcagggacacctggagtctcacttgctaccct
acaccttatgcacctttgctcttttcccatacttcagtccatttactgct
tcctctttagcgaaccattcaagtacatgtccctgtcttgaaccttgatg
cagggagccctagggtaagaaaggaagcaagctcctgtttacctgaaaat
gagaagagtgtggttcgttcagaggtttgatacagatgctttaaagaata
aagagctaactatacagagaggcctaataaaatttgaagaataattgctt
ttcattcactgaaacactatacatactttgcattttatcctaattagatt
atgtccctaaatgcagaaaaatagtaattcctatgttgttcctatgattt
ttttcttaataaatgaatataatcttacaatactaattgattttgtaata
aaagtattaaaattattacagaaattattatttgtattttttgagcattg
agcatgactataaatcatgtaaatccatgtctgcatgccactatataccc
ataagctaatattatttactaactgtcgactaatgaaaacaaaaa
gaattccttttatttttcctctctctaaattctttaatcttttttaatac
agtcaattctttatccccctcctggtctgctctctgactactacatccca
taagtcctgccccactggccctcatctccaagaggatgtccccaacctcc
aatcccctaccaccaccccaaccccaacagacctccccactccctgaggc
cttaattttcttgagggttaggtacatcttctctgagtccagaccccaca
gtcctctgctgtatatgttgtgggtgtctcatatccactggtatatgctg
cctggctggtggctcagtgtctgagcaatctcaggggtccaaattagaaa
actaattgttttctaattgctggatttcctatagggccacccttctcctc
agcttctttcagtttccataattcaaccacaggagtcaccagcttctttc
cattggttgggtataaatatttgcatttgggtataaatatttgcatctga
ctctttcacctgatttttgggcctttcagaggacagtcatggtaggcccc
tgaatataagcacaccatagcatcagtaatagtgttggtcttggggcctc
ctcttgagctggattccaatttgtatctgtcactggacctcctttctctc
aggctcttctccatttttgtctccacaattctttcaaacagaacaattct
gagtcagaggttttgactgtggtttgggaaccccatccctctcttgatgc
actgtctttctactggaggtagactctacaagttctctctccccactgta
ggacatttcatctaaagtctctcccattgagtcctaagcttctctcacct
cacatgtctctggtacattatagagggtccccccacctcctactcctgag
gtttctgtttctattctttctgctggccctcaggatcagtcctattctcc
tcaatacctgatcacgttctctttcccctccctgtgcccttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_44455091_44456206
seq2: B6Ng01-108P18.b_49_1143

seq1  GAATTCAAGTTTCTACAGTCATAGCTCTGGCCATTGCATTCTTTAACTCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGTTTCTACAGTCATAGCTCTGGCCATTGCATTCTTTAACTCG  50

seq1  AATTTATCCACAGTATTGCCAGTCTCTGATAGACTCAGGTAGCAACCACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTATCCACAGTATTGCCAGTCTCTGATAGACTCAGGTAGCAACCACA  100

seq1  GTAATGTCTGAAGTAGAGATCCTTCAGTTTCTACTCTTGCTTTCTGGTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGTCTGAAGTAGAGATCCTTCAGTTTCTACTCTTGCTTTCTGGTAG  150

seq1  CTTCAGTAATAGAGTGGGGCTTCTAGGAAAGAACAGTGAACAGGTTTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGTAATAGAGTGGGGCTTCTAGGAAAGAACAGTGAACAGGTTTTTA  200

seq1  AAATTATTTTTATATTATGCAAATGAGTGTTGACCTACATTTGTGTAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATTTTTATATTATGCAAATGAGTGTTGACCTACATTTGTGTAAGT  250

seq1  TTACTACCAGCATGCTTGATTCCTGCTAAGGTCAGAAGACTCGTTTTGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTACCAGCATGCTTGATTCCTGCTAAGGTCAGAAGACTCGTTTTGAT  300

seq1  CCTCACCTGTAGCTCTAGGCAGTTGTCATCCCCATATGGGTGCCGAGAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACCTGTAGCTCTAGGCAGTTGTCATCCCCATATGGGTGCCGAGAGC  350

seq1  TGAACCTAAGTTTCTGCTAGAACAGACAGTAGTTGTAAACACAAATGCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCTAAGTTTCTGCTAGAACAGACAGTAGTTGTAAACACAAATGCAA  400

seq1  ATGCAACCTTGGGCACTCTCGAAAGGTTGTTCGGTGAATAGACAAGTGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAACCTTGGGCACTCTCGAAAGGTTGTTCGGTGAATAGACAAGTGGG  450

seq1  ACAGGGATTGTTAATGTGCATTAGGAATTAATGAATCTGTAGTCTTAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGATTGTTAATGTGCATTAGGAATTAATGAATCTGTAGTCTTAATA  500

seq1  TACCCAATTGTGAAAGAGGCAGGGACACCTGGAGTCTCACTTGCTACCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCAATTGTGAAAGAGGCAGGGACACCTGGAGTCTCACTTGCTACCCT  550

seq1  ACACCTTATGCACCTTTGCTCTTTTCCCATACTTCAGTCCATTTACTGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTTATGCACCTTTGCTCTTTTCCCATACTTCAGTCCATTTACTGCT  600

seq1  TCCTCTTTAGCGAACCATTCAAGTACATGTCCCTGTCTTGAACCTTGATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTTTAGCGAACCATTCAAGTACATGTCCCTGTCTTGAACCTTGATG  650

seq1  CAGGGAGCCCTAGGGTAAGAAAGGAAGCAAGCTCCTGTTTACCTGAAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAGCCCTAGGGTAAGAAAGGAAGCAAGCTCCTGTTTACCTGAAAAT  700

seq1  GAGAAGAGTGTGGTTCGTTCAGAGGTTTGATACAGATGCTTTAAAGAATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGAGTGTGGTTCGTTCAGAGGTTTGATACAGATGCTTTAAAGAATA  750

seq1  AAGAGCTAACTATACAGAGAGGCCTAATAAAATTTGAAGAATAATTGCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCTAACTATACAGAGAGGCCTAATAAAATTTGAAGAATAATTGCTT  800

seq1  TTCATTCACTGAAACACTATACATACTTTGCATTTTATCCTAATTAGATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTCACTGAAACACTATACATACTTTGCATTTTATCCTAATTAGATT  850

seq1  ATGTCCCTAAATGCAGAAAAATAGTAATTCCTATGTTGTTCCTATGATTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCCTAAATGCAGAAAAATAGTAATTCCTATGTTGTTCCTATGATTT  900

seq1  TTTTCTTAATAAATGAATAATAATCTTACAATACTAATTGATTTTGTAAT  950
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TTTTCTTAATAAATGAAT-ATAATCTTACAATACTAATTGATTTTGTAAT  949

seq1  AAAAAGTATTAAAAATTATTACAAGAAAATTATTAATTTGTA-TTTTTGA  999
       ||||||||| ||||||||||||   |||||||| ||||||| |||||||
seq2  -AAAAGTATT-AAAATTATTACA--GAAATTATT-ATTTGTATTTTTTGA  994

seq1  GCATTGAGCATTGACTATTAAATTCATGTTAAATCCATGTCTGCCAATGC  1049
      |||||||||| |||||||  || ||||| |||||||||||||||  ||||
seq2  GCATTGAGCA-TGACTAT--AAATCATG-TAAATCCATGTCTGC--ATGC  1038

seq1  CACTATAATTACCCCAATAAGCTATATATATTTAACTTAAACTGTTCGAC  1099
      |||||||  |||||  |||||||| ||||  || |||  ||||| |||||
seq2  CACTATA--TACCC--ATAAGCTA-ATATTATTTACT--AACTG-TCGAC  1080

seq1  TAAATGAAAAACAAAAA  1116
      | |||| ||||||||||
seq2  T-AATG-AAAACAAAAA  1095

seq1: chr6_44576531_44577068
seq2: B6Ng01-108P18.g_68_605 (reverse)

seq1  GACTGTCCTCTGAAAGGCCCAAAAATCAGGTGAAAGAGTCAGATGCAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTCCTCTGAAAGGCCCAAAAATCAGGTGAAAGAGTCAGATGCAAAT  50

seq1  ATTTATACCCAAATGCAAATATTTATACCCAACCAATGGAAAGAAGCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATACCCAAATGCAAATATTTATACCCAACCAATGGAAAGAAGCTGG  100

seq1  TGACTCCTGTGGTTGAATTATGGAAACTGAAAGAAGCTGAGGAGAAGGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCCTGTGGTTGAATTATGGAAACTGAAAGAAGCTGAGGAGAAGGGT  150

seq1  GGCCCTATAGGAAATCCAGCAATTAGAAAACAATTAGTTTTCTAATTTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTATAGGAAATCCAGCAATTAGAAAACAATTAGTTTTCTAATTTGG  200

seq1  ACCCCTGAGATTGCTCAGACACTGAGCCACCAGCCAGGCAGCATATACCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTGAGATTGCTCAGACACTGAGCCACCAGCCAGGCAGCATATACCA  250

seq1  GTGGATATGAGACACCCACAACATATACAGCAGAGGACTGTGGGGTCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATATGAGACACCCACAACATATACAGCAGAGGACTGTGGGGTCTGG  300

seq1  ACTCAGAGAAGATGTACCTAACCCTCAAGAAAATTAAGGCCTCAGGGAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGAGAAGATGTACCTAACCCTCAAGAAAATTAAGGCCTCAGGGAGT  350

seq1  GGGGAGGTCTGTTGGGGTTGGGGTGGTGGTAGGGGATTGGAGGTTGGGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGGTCTGTTGGGGTTGGGGTGGTGGTAGGGGATTGGAGGTTGGGGA  400

seq1  CATCCTCTTGGAGATGAGGGCCAGTGGGGCAGGACTTATGGGATGTAGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTCTTGGAGATGAGGGCCAGTGGGGCAGGACTTATGGGATGTAGTA  450

seq1  GTCAGAGAGCAGACCAGGAGGGGGATAAAGAATTGACTGTATTAAAAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAGAGCAGACCAGGAGGGGGATAAAGAATTGACTGTATTAAAAAAG  500

seq1  ATTAAAGAATTTAGAGAGAGGAAAAATAAAAGGAATTC  538
      ||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAGAATTTAGAGAGAGGAAAAATAAAAGGAATTC  538