BAC Information

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BAC

Clone NameB6Ng01-109A17
Chromosome6 (Build37)
Map Location 67,975,329 - 68,204,583
singlet/doubletdoublet
Overlap geneIgk, EG667435, EG434025, Igkv9-119, Igkv14-118-2, Igkv14-118-1, EG384405, Igkv11-118, Igkv1-117, EG434026, EG628206, Igkv11-114, Igkv2-113, LOC232047, EG381776
Upstream geneGadd45a, E230016M11Rik, EG667310, LOC667318, Serbp1, Il12rb2, LOC667324, EG667326, LOC672137, EG209589, LOC100042890, Il23r, Tacstd2, Igkv2-137, 4930515G16Rik, Igkv1-136, Igkv1-135, LOC723992, EG628006, Igkv14-134-1, Igkv17-134, EG628027, LOC384401, EG628042, EG243423, EG628056, EG628072, Igkv9-129, Igkv9-128, EG243433, Igkv14-126-1, LOC723993, EG628127, ENSMUSG00000050218, EG243431, EG628144, Igkv1-122
Downstream geneIgkv14-111, Igkv1-110, Igkv2-109, Igkv1-108, Igkv2-107, Igkv11-106, Igkv2-105, LOC384408, Gm1067, Igkv15-103, Igkv15-102, Igkv20-101-2, Igkv15-101-1, Igkv15-101, Igkv14-100, Igkv1-99, Igkv12-98, Igkv15-97, Igkv10-96, Igkv2-95-2, Igkv2-95-1, EG434031, EG667550, Igkv2-93-1, Igkv19-93, Gm1408, ENSMUSG00000056850, Igkv4-90, Igkv13-89-1, Igkv12-89, Igkv1-88, Igkv13-87, Gm459, Igkv13-85, Igkv13-84, Igkv4-83, Igkv13-82, Gm460, Igkv13-80-1, Igkv4-80, Gm194, EG628498, Igkv4-78, EG667621, Igkv13-76, Igkv4-75, Igkv13-74-1, LOC236047, Igkv13-73-1, EG628516, Gm1499, Igkv13-71-1, Igkv4-71
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-109A17.bB6Ng01-109A17.g
ACCDH916064DH916065
length1,2041,114
definitionDH916064|Mus musculus domesticus DNA, BAC clone: B6Ng01-109A17, 5' end.DH916065|Mus musculus domesticus DNA, BAC clone: B6Ng01-109A17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,975,329 - 67,976,547)(68,203,437 - 68,204,583)
sequence
gaattcagggcacatcatggaaaagaggtcctctgttcagcttctaggtt
gatactggtctagatcacaagtaagaaagaacaatattgaggacttactt
agagcactgtgatgaatgttgcttggttctttgagagtgtttttcctgta
atatacagaatataacacaattgttctgtttctgttccctgggctgagtt
gtgacatccaaatgatccaatctgtctgcatcattcctgtctgcatctct
aggaaaccatcagctgcaaggccagtaacaatattaataaaatgagtgct
cagctcgattgtaacagacaacagagagggctcctaggattctgatcaat
tatacattacattttctaattggggttctagtataattcagtggcagtgg
ctctggtaaagattattctcacactgtctgcaacctagattctgacaata
ttgctatatattactgtacaatgaacatccaccagcagtgacacaaaaca
taacataaaccccaaggagagacaaaagataaggctatgtcagctgccct
tctgtgtgtctctaacagctgagagcatttgtgagatgtcctttgattta
aaaagtttctcaatattttgtaaaaataaacaagaatgctctttgcagcc
taatcatccttagcatcaaccataagcagaaatatgcctcttcttagatc
ttatgtgcagaggtaatggcacctgaaacacctgagttatatcattgaga
tccaagggtcaaaattgaagatgctacagattatataagcaggatttttt
actttgaaaaattatactataggaataaactgcactacactaaactgact
gtaatagagaacaaatggtcacagagatgcatagtagcattggagcctac
tcttttctttttcctattttttattggctattttcttcatttacatttca
aatgttatcccacttcccattttcccatctgcaatcccccattgtgggag
cgggtgtggcgcagtcccaaagcgccaggactgcagctaagtcatatgac
tgtactgacttcctcatataagaacacaacatctgagtgctgcgcaaggt
ttaccaggatacaggtgaatccatttgtgggattgcccttgcctgccctg
aatagcttgagcctcgtactgcaggggcgtgcccgcggtgcctggatgaa
gaga
gaattcctcatctatgagtttagtttagaagagaactgactttcaaaatt
taaggaaaatattttttcatcagttttgaagatattggaatttagtcaca
gaaatgtaatggaaaacatactttgacttctctgtgcatttctaaaattc
atattagttgatgccattgtgaaaagagctttatttaagatgagagagtt
acacaattgctcttgtctataaaatcttgtttaaggtgtgaataactatg
aggagaaaaactggaaaaattaaatttagaagaagatatgtttgtcttgt
tttacagaatcacagaggcctacacatcatgactccaatgtttctgggtc
tggattgaaatagagtacattgctggaggattcatgaagtagagaagctt
tgttcaaagcataaaagaattatagagtgacctgtagtactataggtcat
gtggtaaggacaaaaacaatcaaaacagaataaacaaaaaacaaaaaata
agtaaaacaaaaccacaacaaaaaacttttctccagagacactctgcagt
tatttttgttcctaattaattgcagtctctgattttcttccacttcctaa
tgttccctaatggtatataaatgtactaaggattgagttttgaacacaga
cacttgggaaaacactacaagttcaactataacactacttctctagctcc
caattgttcatcctcatcataaaatgaaaaagtaatttgagtcaatttat
gactctgttagtccctaaatctcctgaatttgtaaatgtgaagtcaaact
acccctgtaaacataagaaataattttatcaataagatcgtgtgaaatct
gcacaaagagaagctgattgttgaattaaatgttgatatgtatgtcgcat
gacacttattgaggagatattttgtgtgatcttggtgtgtgctacatata
gagatcatgtcttcaaaaggaaagaaagaaaaaaatggcagaaatagttt
cactgacaatggaacatggaaagatttccaattctaagacattaaaaatt
cccagcaactgctggagcgacgtacaagtgtaagatcaatctgttaccac
tctactgttcgaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_67975329_67976547
seq2: B6Ng01-109A17.b_48_1251

seq1  GAATTCAGGGCACATCATGGAAAAGAGGTCCTCTGTTCAGCTTCTAGGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGGCACATCATGGAAAAGAGGTCCTCTGTTCAGCTTCTAGGTT  50

seq1  GATACTGGTCTAGATCACAAGTAAGAAAGAACAATATTGAGGACTTACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTGGTCTAGATCACAAGTAAGAAAGAACAATATTGAGGACTTACTT  100

seq1  AGAGCACTGTGATGAATGTTGCTTGGTTCTTTGAGAGTGTTTTTCCTGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCACTGTGATGAATGTTGCTTGGTTCTTTGAGAGTGTTTTTCCTGTA  150

seq1  ATATACAGAATATAACACAATTGTTCTGTTTCTGTTCCCTGGGCTGAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACAGAATATAACACAATTGTTCTGTTTCTGTTCCCTGGGCTGAGTT  200

seq1  GTGACATCCAAATGATCCAATCTGTCTGCATCATTCCTGTCTGCATCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACATCCAAATGATCCAATCTGTCTGCATCATTCCTGTCTGCATCTCT  250

seq1  AGGAAACCATCAGCTGCAAGGCCAGTAACAATATTAATAAAATGAGTGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAACCATCAGCTGCAAGGCCAGTAACAATATTAATAAAATGAGTGCT  300

seq1  CAGCTCGATTGTAACAGACAACAGAGAGGGCTCCTAGGATTCTGATCAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCGATTGTAACAGACAACAGAGAGGGCTCCTAGGATTCTGATCAAT  350

seq1  TATACATTACATTTTCTAATTGGGGTTCTAGTATAATTCAGTGGCAGTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACATTACATTTTCTAATTGGGGTTCTAGTATAATTCAGTGGCAGTGG  400

seq1  CTCTGGTAAAGATTATTCTCACACTGTCTGCAACCTAGATTCTGACAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGTAAAGATTATTCTCACACTGTCTGCAACCTAGATTCTGACAATA  450

seq1  TTGCTATATATTACTGTACAATGAACATCCACCAGCAGTGACACAAAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTATATATTACTGTACAATGAACATCCACCAGCAGTGACACAAAACA  500

seq1  TAACATAAACCCCAAGGAGAGACAAAAGATAAGGCTATGTCAGCTGCCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATAAACCCCAAGGAGAGACAAAAGATAAGGCTATGTCAGCTGCCCT  550

seq1  TCTGTGTGTCTCTAACAGCTGAGAGCATTTGTGAGATGTCCTTTGATTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTGTCTCTAACAGCTGAGAGCATTTGTGAGATGTCCTTTGATTTA  600

seq1  AAAAGTTTCTCAATATTTTGTAAAAATAAACAAGAATGCTCTTTGCAGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTTCTCAATATTTTGTAAAAATAAACAAGAATGCTCTTTGCAGCC  650

seq1  TAATCATCCTTAGCATCAACCATAAGCAGAAATATGCCTCTTCTTAGATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCATCCTTAGCATCAACCATAAGCAGAAATATGCCTCTTCTTAGATC  700

seq1  TTATGTGCAGAGGTAATGGCACCTGAAACACCTGAGTTATATCATTGAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTGCAGAGGTAATGGCACCTGAAACACCTGAGTTATATCATTGAGA  750

seq1  TCCAAGGGTCAAAATTGAAGATGCTACAGATTATATAAGCAGGATTTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGGGTCAAAATTGAAGATGCTACAGATTATATAAGCAGGATTTTTT  800

seq1  ACTTTGAAAAATTATACTATAGGAATAAACTGCACTACACTAAACTGACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGAAAAATTATACTATAGGAATAAACTGCACTACACTAAACTGACT  850

seq1  GTAATAGAGAACAAATGGTCACAGAGATGCATAGTAGCATTGGAGCCTAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATAGAGAACAAATGGTCACAGAGATGCATAGTAGCATTGGAGCCTAC  900

seq1  TCTTTTCTTTTTCCTATTTTTTATTGGCTATTTTCTTCATTTACATTTCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCTTTTTCCTATTTTTTATTGGCTATTTTCTTCATTTACATTTCA  950

seq1  AATGTTATCCCACTTCCCATTTTCCCATCTGCAATCCCCCATTGTGGGGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AATGTTATCCCACTTCCCATTTTCCCATCTGCAATCCCCCATTGT-GGGA  999

seq1  GCGGGTGTGGCGGCAGTCCCAAAGGCGCCAGGGACTGCAGCTAAGTCATA  1050
      ||||||||||| ||||||||||| |||||| |||||||||||||||||||
seq2  GCGGGTGTGGC-GCAGTCCCAAA-GCGCCA-GGACTGCAGCTAAGTCATA  1046

seq1  TGACTTGTACCTGACTTCCTCATATAAGACACA-AACATCTTGAGTGCTG  1099
      |||| |||| ||||||||||||||||||| ||| |||||| |||||||||
seq2  TGAC-TGTA-CTGACTTCCTCATATAAGA-ACACAACATC-TGAGTGCTG  1092

seq1  CGC-AGGTGTACCAGGATACAGGTGAATCCAATTTGGTGGAGATTTGCCC  1148
      ||| |||| ||||||||||||||||||||| |||||  |||   ||||||
seq2  CGCAAGGTTTACCAGGATACAGGTGAATCC-ATTTGTGGGA---TTGCCC  1138

seq1  CTG-CTGCCCTGATTAGCTGAAGCCTCGTGACTGGCAAGGGGGCGTGGCC  1197
       || ||||||||| |||||  |||||||| ||| |||  ||||||| |||
seq2  TTGCCTGCCCTGAATAGCTTGAGCCTCGT-ACT-GCA--GGGGCGT-GCC  1183

seq1  TGCGGTGCGTGGATGAGAGAGA  1219
       ||||||| ||||||| |||||
seq2  CGCGGTGCCTGGATGA-AGAGA  1204

seq1: chr6_68203437_68204583
seq2: B6Ng01-109A17.g_67_1180 (reverse)

seq1  TTTCTGAACAGTAGAGATGGTGACACATGATTTGATCTTTACACTCTTGG  50
      |||| ||||||||||| |||| ||| |    ||||||||   || |||| 
seq2  TTTC-GAACAGTAGAG-TGGTAACAGA----TTGATCTT---ACACTTG-  40

seq1  TTATTGTCTTGCTTTCAGACACTTTTTGCTTGGGATTTATTTATATGTCC  100
       ||  |||  || | ||| ||    ||||| || |||  |||| ||||| 
seq2  -TA-CGTC--GC-TCCAG-CA---GTTGCTGGGAATT--TTTA-ATGTC-  77

seq1  TTTTAGAAATGGGAATCTTTTCCATGTTCCATTGTCAGTTGGAAACTAAT  150
        |||||| ||| |||| |||||||||||||||||||||  |||||||  
seq2  --TTAGAATTGGAAATC-TTTCCATGTTCCATTGTCAGT--GAAACTA--  120

seq1  TTTCTGCCATTTTTTTCTTTCTTTCCTTTTTGAGACATGATCTCTATATG  200
      ||||||||||||||||||||||||||||||  ||||||||||||||||||
seq2  TTTCTGCCATTTTTTTCTTTCTTTCCTTTTGAAGACATGATCTCTATATG  170

seq1  TAGCACACA-CAAGATTCACACAGAATATCCTCCTCAATAAGTGTCATGC  249
      ||||||||| ||||| ||||||| ||||| ||||||||||||||||||||
seq2  TAGCACACACCAAGA-TCACACAAAATAT-CTCCTCAATAAGTGTCATGC  218

seq1  GACATACATTATCAACATTTAATTCAACAATCAGCTTCTCTTTGTGCAGA  299
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GACATACA-TATCAACATTTAATTCAACAATCAGCTTCTCTTTGTGCAGA  267

seq1  TTTCACACGATCTTATTGATAAAATTATTTCTTATGTTTTACAGGGGTAG  349
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TTTCACACGATCTTATTGATAAAATTATTTCTTATG-TTTACAGGGGTAG  316

seq1  TTTGACTTCACATTTACAAATTCAGGAGATTTAGGGACTAACAGAGTCAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACTTCACATTTACAAATTCAGGAGATTTAGGGACTAACAGAGTCAT  366

seq1  AAATTGACTCAAATTACTTTTTCATTTTATGATGAGGATGAACAATTGGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGACTCAAATTACTTTTTCATTTTATGATGAGGATGAACAATTGGG  416

seq1  AGCTAGAGAAGTAGTGTTATAGTTGAACTTGTAGTGTTTTCCCAAGTGTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGAGAAGTAGTGTTATAGTTGAACTTGTAGTGTTTTCCCAAGTGTC  466

seq1  TGTGTTCAAAACTCAATCCTTAGTACATTTATATACCATTAGGGAACATT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTCAAAACTCAATCCTTAGTACATTTATATACCATTAGGGAACATT  516

seq1  AGGAAGTGGAAGAAAATCAGAGACTGCAATTAATTAGGAACAAAAATAAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGTGGAAGAAAATCAGAGACTGCAATTAATTAGGAACAAAAATAAC  566

seq1  TGCAGAGTGTCTCTGGAGAAAAGTTTTTTGTTGTGGTTTTGTTTTACTTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAGTGTCTCTGGAGAAAAGTTTTTTGTTGTGGTTTTGTTTTACTTA  616

seq1  TTTTTTGTTTTTTGTTTATTCTGTTTTGATTGTTTTTGTCCTTACCACAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGTTTTTTGTTTATTCTGTTTTGATTGTTTTTGTCCTTACCACAT  666

seq1  GACCTATAGTACTACAGGTCACTCTATAATTCTTTTATGCTTTGAACAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTATAGTACTACAGGTCACTCTATAATTCTTTTATGCTTTGAACAAA  716

seq1  GCTTCTCTACTTCATGAATCCTCCAGCAATGTACTCTATTTCAATCCAGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTCTACTTCATGAATCCTCCAGCAATGTACTCTATTTCAATCCAGA  766

seq1  CCCAGAAACATTGGAGTCATGATGTGTAGGCCTCTGTGATTCTGTAAAAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAAACATTGGAGTCATGATGTGTAGGCCTCTGTGATTCTGTAAAAC  816

seq1  AAGACAAACATATCTTCTTCTAAATTTAATTTTTCCAGTTTTTCTCCTCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAAACATATCTTCTTCTAAATTTAATTTTTCCAGTTTTTCTCCTCA  866

seq1  TAGTTATTCACACCTTAAACAAGATTTTATAGACAAGAGCAATTGTGTAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTATTCACACCTTAAACAAGATTTTATAGACAAGAGCAATTGTGTAA  916

seq1  CTCTCTCATCTTAAATAAAGCTCTTTTCACAATGGCATCAACTAATATGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCATCTTAAATAAAGCTCTTTTCACAATGGCATCAACTAATATGA  966

seq1  ATTTTAGAAATGCACAGAGAAGTCAAAGTATGTTTTCCATTACATTTCTG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAGAAATGCACAGAGAAGTCAAAGTATGTTTTCCATTACATTTCTG  1016

seq1  TGACTAAATTCCAATATCTTCAAAACTGATGAAAAAATATTTTCCTTAAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTAAATTCCAATATCTTCAAAACTGATGAAAAAATATTTTCCTTAAA  1066

seq1  TTTTGAAAGTCAGTTCTCTTCTAAACTAAACTCATAGATGAGGAATTC  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAAAGTCAGTTCTCTTCTAAACTAAACTCATAGATGAGGAATTC  1114