BAC Information

Click to search

BAC

Clone NameB6Ng01-109C03
Chromosome6 (Build37)
Map Location 30,763,668 - 30,764,821
singlet/doubletsinglet
Overlap geneCopg2
Upstream gene4631427C17Rik, D330017J20Rik, 1700023L04Rik, 1700080G18Rik, Nrf1, Ube2h, Zc3hc1, 2410127E18Rik, 2700094F01Rik, 1700025E21Rik, Cpa2, Cpa4, Cpa5, Cpa1, Tsga14, Mest, Copg2
Downstream geneTsga13, Klf14, LOC100038973, AB041803, Mkln1, Podxl, EG619959, LOC620104
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-109C03.bB6Ng01-109C03.g
ACCDH916125DH916126
length1,140790
definitionDH916125|Mus musculus domesticus DNA, BAC clone: B6Ng01-109C03, 5' end.DH916126|Mus musculus domesticus DNA, BAC clone: B6Ng01-109C03, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttattttccaacagccagcattcattcttttacatacctttgta
agagtacaaggatgctggggagaaggctctcattctgagccccaaattta
gccaaagcactcacagcagctattgtgaaacacaagatgaagcaatgtaa
atactggcttctcagagctaagcaataaacattcaaaaacaaatcagaca
cttgtgaggccaaggcaggaaggttactcaaagtctgagaccagtctaag
ctacaaagtaagaccttgtagtggaaaacaaacaaaacaaaacaaaaata
ccaaaactagaagcaaattagagaagcagttggtagtcaatagaaataaa
gtctcttgtgttgacagtttcttgatcttacttaaatataaatagaatag
tgaagaatctagcaaactctatagaggaagattctcattcagcgaggaaa
aataattatctatctatctatctatctatctatctatctatctatctatc
tatcatctgtctatctatctgtctatctatctaccacctatctatctcct
gggtgtgagctgtctcttccccatgacagcctcttatatatcctctgaca
tgattcagttcaaattttaaacaactagcaccaaaaaactattattaaaa
tttctttcattcaacaaggattcaatgctcacctaaattttacctggagg
tgtggcaagagctaaggggtagaaagataaaagacatggtctctaaccta
aggagtgtggctgcagtaagatagacaagtaaagactatcttgcctagta
aatctctcgtaaactgtatccaagttgctaggtaagtacggggcttagga
aagacaaagatttgagatgctactgcacttaattttttaggatagttagt
tcagccagagggaaatggcaggacaagagtattagaaaggaaaacaaatc
aaaacgtcctgtgtcctgagcagaaagtgttgctatagacttgagtgaga
aaggctagtgtggacccatgttagaatgaagtaaaagactagagataaac
taaaacaaccagacgtcaaggttttaaggttaattatcccacatagaaag
atatatatgtagttgttttttaagaatttggccaattatt
gaattctcagttcctctagcaccatctctgcctgccctctgaaactggaa
gccaaccctagattaaacgttttcctttataaaaattgccatggtggtgg
tgtctcttcacagcaacgaaaccctgagacagaagttagtactagggact
gggttaatgctgtgataggcctgaccatgctttttatttagagaaatgtg
aattttggaaccttgggttaggaacgcagtggaatgctttaagcaatgcc
caataggttattcgagtagacgcatggtggatagtggtgttgagggtgat
ttgaactgtgttgcctagagaacactgtggctgctttttgcccttgtctg
aagaatttgcctgagactaaactgaagaattttggattaattgcattggc
aaagaaatctcaaaacagcctagtgtgatctgggctgtgtggttactaat
tgccatacttacaaagatctataacaaaaaggggaaccagaaagaataga
gttaaatcctgaattcaagattgaagatattaaatggaataaaatggagt
ggtgatcccagagctaggtcccactcagctaagcttcctttgtgtgaaaa
gggaattaaagaacacatggtggttcgtgcctttagtttccagaactcag
gagacagatctctgctttcaaggtcagtttacagagcaaggtccatgaca
accaaacttaggtagtgagggaaaccatcaaaaccagaaagctgataaag
atgtaactgacaagggggccatgttccaccccattgcatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_30763668_30764821
seq2: B6Ng01-109C03.b_49_1188

seq1  GAATTCTTATTTTCCAACAGCCAGCATTCATTCTTTTACATACCTTTGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATTTTCCAACAGCCAGCATTCATTCTTTTACATACCTTTGTA  50

seq1  AGAGTACAAGGATGCTGGGGAGAAGGCTCTCATTCTGAGCCCCAAATTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTACAAGGATGCTGGGGAGAAGGCTCTCATTCTGAGCCCCAAATTTA  100

seq1  GCCAAAGCACTCACAGCAGCTATTGTGAAACACAAGATGAAGCAATGTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAAGCACTCACAGCAGCTATTGTGAAACACAAGATGAAGCAATGTAA  150

seq1  ATACTGGCTTCTCAGAGCTAAGCAATAAACATTCAAAAACAAATCAGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGGCTTCTCAGAGCTAAGCAATAAACATTCAAAAACAAATCAGACA  200

seq1  CTTGTGAGGCCAAGGCAGGAAGGTTACTCAAAGTCTGAGACCAGTCTAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGAGGCCAAGGCAGGAAGGTTACTCAAAGTCTGAGACCAGTCTAAG  250

seq1  CTACAAAGTAAGACCTTGTAGTGGAAAACAAACAAAACAAAACAAAAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAAGTAAGACCTTGTAGTGGAAAACAAACAAAACAAAACAAAAATA  300

seq1  CCAAAACTAGAAGCAAATTAGAGAAGCAGTTGGTAGTCAATAGAAATAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAACTAGAAGCAAATTAGAGAAGCAGTTGGTAGTCAATAGAAATAAA  350

seq1  GTCTCTTGTGTTGACAGTTTCTTGATCTTACTTAAATATAAATAGAATAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTTGTGTTGACAGTTTCTTGATCTTACTTAAATATAAATAGAATAG  400

seq1  TGAAGAATCTAGCAAACTCTATAGAGGAAGATTCTCATTCAGCGAGGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAATCTAGCAAACTCTATAGAGGAAGATTCTCATTCAGCGAGGAAA  450

seq1  AATAATTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATC  500

seq1  TATCATCTGTCTATCTATCTGTCTATCTATCTACCACCTATCTATCTCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATCTGTCTATCTATCTGTCTATCTATCTACCACCTATCTATCTCCT  550

seq1  GGGTGTGAGCTGTCTCTTCCCCATGACAGCCTCTTATATATCCTCTGACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTGAGCTGTCTCTTCCCCATGACAGCCTCTTATATATCCTCTGACA  600

seq1  TGATTCAGTTCAAATTTTAAACAACTAGCACCAAAAAACTATTATTAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCAGTTCAAATTTTAAACAACTAGCACCAAAAAACTATTATTAAAA  650

seq1  TTTCTTTCATTCAACAAGGATTCAATGCTCACCTAAATTTTACCTGGAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCATTCAACAAGGATTCAATGCTCACCTAAATTTTACCTGGAGG  700

seq1  TGTGGCAAGAGCTAAGGGGTAGAAAGATAAAAGACATGGTCTCTAACCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCAAGAGCTAAGGGGTAGAAAGATAAAAGACATGGTCTCTAACCTA  750

seq1  AGGAGTGTGGCTGCAGTAAGATAGACAAGTAAAGACTATCTTGCCTAGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTGTGGCTGCAGTAAGATAGACAAGTAAAGACTATCTTGCCTAGTA  800

seq1  AATCTCTCGTAAACTGTATCCAAGTTGCTAGGTAAGTACGGGGCTTAGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCTCGTAAACTGTATCCAAGTTGCTAGGTAAGTACGGGGCTTAGGA  850

seq1  AAGACAAAGATTTGAGATGCTACTGCACTTAATTTTTTAGGATAGTTAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAAAGATTTGAGATGCTACTGCACTTAATTTTTTAGGATAGTTAGT  900

seq1  TCAGCCAGAGGGAAAAGGCAGGACAAGAGTATTAGAAAGGAAAACAAATC  950
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TCAGCCAGAGGGAAATGGCAGGACAAGAGTATTAGAAAGGAAAACAAATC  950

seq1  AAAACGTCCTGTGTCCTGAGCAGAAAGTGTTGCTATTAGACTTGAGTGAG  1000
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AAAACGTCCTGTGTCCTGAGCAGAAAGTGTTGCTA-TAGACTTGAGTGAG  999

seq1  AAAGGCTTAGTGTTGGACCCATGTTAGAATGAAAGTAAAAGACTAGAGAT  1050
      |||||| ||||| |||||||||||||||||| ||||||||||||||||||
seq2  AAAGGC-TAGTG-TGGACCCATGTTAGAATG-AAGTAAAAGACTAGAGAT  1046

seq1  AAACTAAAAACCACACAGACGTCAAGGTTTTAAAGGTTACATTATCCCAC  1100
      |||||||||  ||  |||||||||||||||| ||||||| ||||||||||
seq2  AAACTAAAA--CAACCAGACGTCAAGGTTTT-AAGGTTA-ATTATCCCAC  1092

seq1  ATAGGTATAGGATATATATGTAGTTTGTTTTTTTAAGATTTTGTACAAAT  1150
      ||||    | |||||||||||||||   |||||||||| ||||  | |||
seq2  ATAG---AAAGATATATATGTAGTT--GTTTTTTAAGAATTTG-GCCAAT  1136

seq1  TATT  1154
      ||||
seq2  TATT  1140