BAC Information

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BAC

Clone NameB6Ng01-109C09
Chromosome6 (Build37)
Map Location 34,187,666 - 34,353,292
singlet/doubletdoublet
Overlap geneAkr1b3, Akr1b8, LOC664942, 2310005E10Rik
Upstream geneGm1401, Exoc4, Lrguk, Slc35b4
Downstream geneAkr1b7, Bpgm, LOC100039184, Cald1, Agbl3, Tmem140, 3110062M04Rik, 9530020G05Rik, Stra8, 2010107G12Rik, Cnot4, Nup205, 1810058I24Rik, Slc13a4, BC064033, 1700065J11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-109C09.bB6Ng01-109C09.g
ACCDH916135DH916136
length1,1281,066
definitionDH916135|Mus musculus domesticus DNA, BAC clone: B6Ng01-109C09, 5' end.DH916136|Mus musculus domesticus DNA, BAC clone: B6Ng01-109C09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,352,165 - 34,353,292)(34,187,666 - 34,188,737)
sequence
gaattcttcctggttaatcaatgcagccgtcattggactggagggtactc
atgctttctcatgattccaaaatcaatgaggccaagtctggaaatgaacc
atttccaaaaaggaccatgtaggttttgatggcccttacgattatattgt
ctagatcttttcccatgaccctgaaggtcaagcagaaagcctgttcctcg
tcctccacagcctcatgacctcttccattcctcattcctgaaaacgtcat
ctgtttcatttactatggcatgactatctctgagtaatgggggaagtata
ttccccagaaaaaaaggatggaaagtggagtagtaaagacagcagatcaa
ctatggggcaacacagccatcagcatgggggttatgggatcaacagcctg
gtggtgctccaggggcaggaacaatgtcacacccctccttacacagctat
gccggatccagcacacatttaagagaatgtacttggtaatatctatacaa
ccaggtgactattcttattctcaaaaacatgtccttataattaattgttt
ataataataattaacttttgaaagattaagaccaaatatattatactaac
ttattaatagtaaatattacattaacttttactattaatccatcatcttg
gataggctacacatatttgcttttgtggcactattttatgaaaatcaaat
atcaaaacaaacccattcctctgttttgcaatgctgctatggtatttgtt
ttcaagacaagcaagtttatgagctactccaagcttacaacgagataatg
actgcactgtttgtttagtgaaaggtgaagctactcgatccttttctgaa
gaaccatacttcctaagctctattgatttcctttgttgctgctgagttcc
tggagttgcagtcctatgcatttcttgtgtctgtttattgagacagagtc
acatgcagtccacggtggctttgaactagcactatgccttacgatggatg
accttagacttctgatcccacgcttccacctactaagtcttgggattact
gatgtgggccggtttcccatcctcctatggttgtgggcctataaatattt
cttttcagcctttccatgtataggttcc
gaattctcagggggagtttttttttccagttccagaaatatgggaataca
agatgaaaagtgaaggcgcatacttgagtcactgcagtgcacacagtttt
gtgtggattttcaggtgcccacacattccattctctgcatcattaaacat
tgaccagacatgacctagacttgtgcacacagaaatcctggccttctgca
cctgaccaacctcagtgatctctgagcattggatatttccatcatgaaga
ggctgcacggagtgcaggcactgcgtggctcccacctctcaaactaaatc
acgtctagaccattagattcctagcctgtggagttgtaacctggaaattt
tgaaagggtttgtcacatgatgggggggggcatttgaagtgcatgttctg
gaagcagaagttctggctacccacctcccaactgaggaagaaggtagatg
acctgaaccaagttcagaaatgtaaatgcacagtgtgtggagatcctgtt
ctgtcagcttctttctggaagagggaataaaattaattccatgtttcaga
aagttgtcggccatcccatcaataacaagggaaaataatttttctatttt
tacacacctagcaattatcaggaccagggagtggtataaggcaggatgtc
ttcctggggaagctgggcttttgcaggtagaaaaaaggaatttaaaatgc
aagatggattctgcaaagtgccaaataaatgatttaaggggtaattgcct
tggaattgaaagaaaggaaaataatcaaggcccctcaaaccacccactcc
caacgccatatgaccaacttcctgtggaggagaagatatttattacaaac
atgatagagctgtcagaagtctaagaatcaattacatgtattgtgaagca
taaggtacaattgtatttgctctgaaagaacataaaacttaccagtttcc
ataaattgaaatatggaacccatcatgacttcctgcagagtcccaccccc
acccacttacttccccctcttggttttattgccttgcccttatcgcgtga
ttttgatactaagcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_34352165_34353292
seq2: B6Ng01-109C09.b_45_1172 (reverse)

seq1  GGAAC--ATACATAGAAA-GCTGAAAAAGAAATA-ATATAAAGACACAAA  46
      |||||  |||||| |||| |||| ||||||||||  ||||    ||||| 
seq2  GGAACCTATACATGGAAAGGCTG-AAAAGAAATATTTATAGGCCCACAAC  49

seq1  CATAGGGAGATGGGAAA-CAGACCACATCAGTAATCCCAGGACTTAGTAG  95
      ||||||  ||||||||| | | ||||||||||||||||| ||||||||||
seq2  CATAGGAGGATGGGAAACCGGCCCACATCAGTAATCCCAAGACTTAGTAG  99

seq1  GTGGAAGCGTGGGGATCAGGAGTCTAAGGTCATCCATCGTAAGGCATAGT  145
      |||||||||| |||||||| ||||||||||||||||||||||||||||||
seq2  GTGGAAGCGT-GGGATCAGAAGTCTAAGGTCATCCATCGTAAGGCATAGT  148

seq1  GCTAGTTCAAAGCCACCGTGGACTGCATGTGACTCTGTCTCAATAAAACA  195
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GCTAGTTCAAAGCCACCGTGGACTGCATGTGACTCTGTCTCAAT-AAACA  197

seq1  GACACAAGAAATGCATAGGAACTGCAACTCCAGGAACTCAGCAGCAACAA  245
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GACACAAGAAATGCATAGG-ACTGCAACTCCAGGAACTCAGCAGCAACAA  246

seq1  AGGAAAATCAATAGAGCTTAGGAAGTATGGTTCTTCAGAAAAGGATCGAG  295
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGG-AAATCAATAGAGCTTAGGAAGTATGGTTCTTCAGAAAAGGATCGAG  295

seq1  TAGCTTCACCTTTCACTAAACAAACAGTGCAGTCATTATCTCGTTGTAAG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTCACCTTTCACTAAACAAACAGTGCAGTCATTATCTCGTTGTAAG  345

seq1  CTTGGAGTAGCTCATAAACTTGCTTGTCTTGAAAACAAATACCATAGCAG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAGTAGCTCATAAACTTGCTTGTCTTGAAAACAAATACCATAGCAG  395

seq1  CATTGCAAAACAGAGGAATGGGTTTGTTTTGATATTTGATTTTCATAAAA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCAAAACAGAGGAATGGGTTTGTTTTGATATTTGATTTTCATAAAA  445

seq1  TAGTGCCACAAAAGCAAATATGTGTAGCCTATCCAAGATGATGGATTAAT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGCCACAAAAGCAAATATGTGTAGCCTATCCAAGATGATGGATTAAT  495

seq1  AGTAAAAGTTAATGTAATATTTACTATTAATAAGTTAGTATAATATATTT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAAGTTAATGTAATATTTACTATTAATAAGTTAGTATAATATATTT  545

seq1  GGTCTTAATCTTTCAAAAGTTAATTATTATTATAAACAATTAATTATAAG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTAATCTTTCAAAAGTTAATTATTATTATAAACAATTAATTATAAG  595

seq1  GACATGTTTTTGAGAATAAGAATAGTCACCTGGTTGTATAGATATTACCA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGTTTTTGAGAATAAGAATAGTCACCTGGTTGTATAGATATTACCA  645

seq1  AGTACATTCTCTTAAATGTGTGCTGGATCCGGCATAGCTGTGTAAGGAGG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACATTCTCTTAAATGTGTGCTGGATCCGGCATAGCTGTGTAAGGAGG  695

seq1  GGTGTGACATTGTTCCTGCCCCTGGAGCACCACCAGGCTGTTGATCCCAT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGACATTGTTCCTGCCCCTGGAGCACCACCAGGCTGTTGATCCCAT  745

seq1  AACCCCCATGCTGATGGCTGTGTTGCCCCATAGTTGATCTGCTGTCTTTA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCCATGCTGATGGCTGTGTTGCCCCATAGTTGATCTGCTGTCTTTA  795

seq1  CTACTCCACTTTCCATCCTTTTTTTCTGGGGAATATACTTCCCCCATTAC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTCCACTTTCCATCCTTTTTTTCTGGGGAATATACTTCCCCCATTAC  845

seq1  TCAGAGATAGTCATGCCATAGTAAATGAAACAGATGACGTTTTCAGGAAT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGATAGTCATGCCATAGTAAATGAAACAGATGACGTTTTCAGGAAT  895

seq1  GAGGAATGGAAGAGGTCATGAGGCTGTGGAGGACGAGGAACAGGCTTTCT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAATGGAAGAGGTCATGAGGCTGTGGAGGACGAGGAACAGGCTTTCT  945

seq1  GCTTGACCTTCAGGGTCATGGGAAAAGATCTAGACAATATAATCGTAAGG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGACCTTCAGGGTCATGGGAAAAGATCTAGACAATATAATCGTAAGG  995

seq1  GCCATCAAAACCTACATGGTCCTTTTTGGAAATGGTTCATTTCCAGACTT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCAAAACCTACATGGTCCTTTTTGGAAATGGTTCATTTCCAGACTT  1045

seq1  GGCCTCATTGATTTTGGAATCATGAGAAAGCATGAGTACCCTCCAGTCCA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCATTGATTTTGGAATCATGAGAAAGCATGAGTACCCTCCAGTCCA  1095

seq1  ATGACGGCTGCATTGATTAACCAGGAAGAATTC  1128
      |||||||||||||||||||||||||||||||||
seq2  ATGACGGCTGCATTGATTAACCAGGAAGAATTC  1128

seq1: chr6_34187666_34188737
seq2: B6Ng01-109C09.g_70_1135

seq1  GAATTCTCAGGGGGAGTTTTTTTTTCCAGTTCCAGAAATATGGGAATACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGGGGGAGTTTTTTTTTCCAGTTCCAGAAATATGGGAATACA  50

seq1  AGATGAAAAGTGAAGGCGCATACTTGAGTCACTGCAGTGCACACAGTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAAAAGTGAAGGCGCATACTTGAGTCACTGCAGTGCACACAGTTTT  100

seq1  GTGTGGATTTTCAGGTGCCCACACATTCCATTCTCTGCATCATTAAACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGATTTTCAGGTGCCCACACATTCCATTCTCTGCATCATTAAACAT  150

seq1  TGACCAGACATGACCTAGACTTGTGCACACAGAAATCCTGGCCTTCTGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCAGACATGACCTAGACTTGTGCACACAGAAATCCTGGCCTTCTGCA  200

seq1  CCTGACCAACCTCAGTGATCTCTGAGCATTGGATATTTCCATCATGAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACCAACCTCAGTGATCTCTGAGCATTGGATATTTCCATCATGAAGA  250

seq1  GGCTGCACGGAGTGCAGGCACTGCGTGGCTCCCACCTCTCAAACTAAATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCACGGAGTGCAGGCACTGCGTGGCTCCCACCTCTCAAACTAAATC  300

seq1  ACGTCTAGACCATTAGATTCCTAGCCTGTGGAGTTGTAACCTGGAAATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTCTAGACCATTAGATTCCTAGCCTGTGGAGTTGTAACCTGGAAATTT  350

seq1  TGAAAGGGTTTGTCACATGATGGGGGGGGGCATTTGAAGTGCATGTTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGGGTTTGTCACATGATGGGGGGGGGCATTTGAAGTGCATGTTCTG  400

seq1  GAAGCAGAAGTTCTGGCTACCCACCTCCCAACTGAGGAAGAAGGTAGATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAGAAGTTCTGGCTACCCACCTCCCAACTGAGGAAGAAGGTAGATG  450

seq1  ACCTGAACCAAGTTCAGAAATGTAAATGCACAGTGTGTGGAGATCCTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGAACCAAGTTCAGAAATGTAAATGCACAGTGTGTGGAGATCCTGTT  500

seq1  CTGTCAGCTTCTTTCTGGAAGAGGGAATAAAATTAATTCCATGTTTCAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCAGCTTCTTTCTGGAAGAGGGAATAAAATTAATTCCATGTTTCAGA  550

seq1  AAGTTGTCGGCCATCCCATCAATAACAAGGGAAAATAATTTTTCTATTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGTCGGCCATCCCATCAATAACAAGGGAAAATAATTTTTCTATTTT  600

seq1  TACACACCTAGCAATTATCAGGACCAGGGAGTGGTATAAGGCAGGATGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACACCTAGCAATTATCAGGACCAGGGAGTGGTATAAGGCAGGATGTC  650

seq1  TTCCTGGGGAAGCTGGGCTTTTGCAGGTAGAAAAAAGGAATTTAAAATGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGGGGAAGCTGGGCTTTTGCAGGTAGAAAAAAGGAATTTAAAATGC  700

seq1  AAGATGGATTCTGCAAAGTGCCAAATAAATGATTTAAGGGGTAATTGCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGGATTCTGCAAAGTGCCAAATAAATGATTTAAGGGGTAATTGCCT  750

seq1  TGGAATTGAAAGAAAGGAAAATAATCAAGGCCCCTCAAACCACCCACTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATTGAAAGAAAGGAAAATAATCAAGGCCCCTCAAACCACCCACTCC  800

seq1  CAACGCCATATGACCAACTTCCTGTGGAGGAGAAGATATTTATTACAAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACGCCATATGACCAACTTCCTGTGGAGGAGAAGATATTTATTACAAAC  850

seq1  ATGATAGAGCTGTCAGAAGTCTAAGAAATCAATTACATGTATTGTGAAGC  900
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ATGATAGAGCTGTCAGAAGTCTAAG-AATCAATTACATGTATTGTGAAGC  899

seq1  ATAAGGTACAATTGTATTTGCTCTGAAAGAACATAAAACTTACCAGTTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ATAAGGTACAATTGTATTTGCTCTGAAAGAACATAAAACTTACCAGTTTC  949

seq1  CATTAAAATAGAAAATAT-GAACCCATCATGACTTCCTGCAGGAGTCCCC  999
      |||  |||| | |||||| |||||||||||||||||||||| |||| |||
seq2  CAT--AAATTG-AAATATGGAACCCATCATGACTTCCTGCA-GAGT-CCC  994

seq1  ACCCCCACCCCATCACTTCCCCCCTCTGTTTTAATTGCACTGCCTCTATG  1049
      ||||||||||  | |||||||||   || ||| |||||  ||||  ||| 
seq2  ACCCCCACCCACTTACTTCCCCCTCTTGGTTTTATTGCCTTGCCCTTAT-  1043

seq1  CAGGTGATTTTGATACTAAGCCT  1072
      |  ||||||||||||||||||||
seq2  CGCGTGATTTTGATACTAAGCCT  1066