BAC Information

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BAC

Clone NameB6Ng01-109H21
Chromosome6 (Build37)
Map Location 65,468,475 - 65,469,666
singlet/doubletsinglet
Overlap genenone
Upstream geneGrid2, Atoh1, LOC100041833, LOC667115, Smarcad1, Ptgds2, LOC100042741, LOC100041858, LOC634745, EG667141, C130060K24Rik
Downstream gene9030611K07Rik, A930038C07Rik, LOC667160, Prdm5, 4930544G11Rik, Ppia-ps6_651.1, LOC100041916, Tpm3-rs3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-109H21.bB6Ng01-109H21.g
ACCDH916385DH916386
length1,1691,168
definitionDH916385|Mus musculus domesticus DNA, BAC clone: B6Ng01-109H21, 5' end.DH916386|Mus musculus domesticus DNA, BAC clone: B6Ng01-109H21, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaagttctttctgcttgtgcatgttgacaaagtacatgatggact
cttattgctttgtttgtgttggtctcagtttgcatgatcaccctacaaga
acagcaataatcttggaagaggaggaaaataaacttcccaaattgtccaa
agagcttaaaaagctcttttggctgaagtcacaaaggcagggtgaaatgc
aagactcccagccttctagatgcgattaggagtccatgtaacgagtctgg
ccttgcgcagagtaataaccccagaggcatacagtgaaacacctaatggt
tcttgaggcagccatcaggggtagcaaggaatgagccacccaagggataa
cagccactcacgtcttattttgagtttgttttggtttgaggaaagtttat
tgttgttttgagataggtctcactctatatattgtggggaccttgaactt
tcaaggatcctccaatcttgaaactacaggcataatccaccatgtacagc
tacagtctgtgttctggacagactggaggaaccctcaactctgagcaggc
cctcctaggcaactcggaagatctactaagttggcccttaggctgctagc
aggctaatcctgtgtgctctgattcctctaggatcagagggatgttccct
gatctgcttctccttgcagcaaggactccagtaggcactcatattgtcct
cccaggacgcacatggtcagtaaaaagagagaatgttgaattgtgcatgg
tatttctggtacccaattacttgttacatttcattaagtaacagaacatg
gctagtctgacaacagctattgtgtaaatgaatagagaaaggatgcctcg
aatttctgaactggtcgccatatttaaaaacaaaagagaggtacttcttc
atttctctatgttctatgctttgggactgtgtatattttatattgttcta
tgattaacattgataatttaaaagttaaagaaagatatatttaggtcttt
ggctactctgattctctgcaccctaccatatttacaaaatgagaaaaagt
ttgcatggatatttcataagattcaatatctatcatatttagataccatc
acagtttcccaagactatttactggtatattcatgttgtaaccttattgt
tctggggcatggacactag
gaattcaggataggaaatagaaacaaaagccatggatgctgctacttgct
gacttgctccttgactcactccctgcctcatcctcagccagcatcgtaca
aggccaggtttgcttttctaggaatggtgctgcccacagtaggatgggcc
ctcctgtgttaatcacttatccagacaatcctcacaggcacgctcagaga
ccaatctgatctggacaatcccttagcagagactcattcaggcagcccta
gactgtctcaaatcaacagctgaaaatatctatgactatgccagtagctt
tctttccttttctgctttggatatttgttggggaaataaaaaacaaacaa
acaaaaacaaaaattaaaaataaaaaaatgtaagccattacaagaatagg
cccaaggaagaagatcacatgatcacctcaggaggaaaggcctctaagga
agtacagtaaccctccaagataaaagctctgagactctgagggggaaaag
agcttacatccaccaaaaggtagccgatgcatcatctcagagggcatgag
tttatttagtttgtacttatcatgaaagggttttctttctcaggtcaatt
ataaaagttctgccggacaataatctaggttggcagttcatttccttccc
gtgatcgaaaggcatcatttcataccccacccccaccggatttgagagtt
tatcttaagaaacctatgtttttcatgggtttatcattatgtgagactca
gtgcttctctcttgtgatttcaaccttactaatatctttttaaacacaat
atgacatatggcattctttccctgtcgtatatgcttgatgttctgaaagc
tttgtatctgaaggcatctctttctgtatttttggtaatattttctatga
acttcttaaatatattttctatgcctttagcttctctctctgtggccatc
atgaaaagatttgatatttttcatgtgtcaataaatctcatatattctgc
tcatactttcttgaggaatatcttcttgccattgtctggatgctggtaca
tttaggttgtcaccaaggccaaaatctgtttcctactggaatctttttac
agaaaattgcacactggtttcaatttggacatatccacttaaattccaat
gttcacatttgaatggat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_65468475_65469666
seq2: B6Ng01-109H21.b_46_1214

seq1  GAATTCAAGTTCTTTCTGCTTGTGCATGTTGACAAAGTACATGATGGACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGTTCTTTCTGCTTGTGCATGTTGACAAAGTACATGATGGACT  50

seq1  CTTATTGCTTTGTTTGTGTTGGTCTCAGTTTGCATGATCACCCTACAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTGCTTTGTTTGTGTTGGTCTCAGTTTGCATGATCACCCTACAAGA  100

seq1  ACAGCAATAATCTTGGAAGAGGAGGAAAATAAACTTCCCAAATTGTCCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAATAATCTTGGAAGAGGAGGAAAATAAACTTCCCAAATTGTCCAA  150

seq1  AGAGCTTAAAAAGCTCTTTTGGCTGAAGTCACAAAGGCAGGGTGAAATGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTTAAAAAGCTCTTTTGGCTGAAGTCACAAAGGCAGGGTGAAATGC  200

seq1  AAGACTCCCAGCCTTCTAGATGCGATTAGGAGTCCATGTAACGAGTCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTCCCAGCCTTCTAGATGCGATTAGGAGTCCATGTAACGAGTCTGG  250

seq1  CCTTGCGCAGAGTAATAACCCCAGAGGCATACAGTGAAACACCTAATGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCGCAGAGTAATAACCCCAGAGGCATACAGTGAAACACCTAATGGT  300

seq1  TCTTGAGGCAGCCATCAGGGGTAGCAAGGAATGAGCCACCCAAGGGATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAGGCAGCCATCAGGGGTAGCAAGGAATGAGCCACCCAAGGGATAA  350

seq1  CAGCCACTCACGTCTTATTTTGAGTTTGTTTTGGTTTGAGGAAAGTTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCACTCACGTCTTATTTTGAGTTTGTTTTGGTTTGAGGAAAGTTTAT  400

seq1  TGTTGTTTTGAGATAGGTCTCACTCTATATATTGTGGGGACCTTGAACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTTTTGAGATAGGTCTCACTCTATATATTGTGGGGACCTTGAACTT  450

seq1  TCAAGGATCCTCCAATCTTGAAACTACAGGCATAATCCACCATGTACAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGATCCTCCAATCTTGAAACTACAGGCATAATCCACCATGTACAGC  500

seq1  TACAGTCTGTGTTCTGGACAGACTGGAGGAACCCTCAACTCTGAGCAGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTCTGTGTTCTGGACAGACTGGAGGAACCCTCAACTCTGAGCAGGC  550

seq1  CCTCCTAGGCAACTCGGAAGATCTACTAAGTTGGCCCTTAGGCTGCTAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTAGGCAACTCGGAAGATCTACTAAGTTGGCCCTTAGGCTGCTAGC  600

seq1  AGGCTAATCCTGTGTGCTCTGATTCCTCTAGGATCAGAGGGATGTTCCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTAATCCTGTGTGCTCTGATTCCTCTAGGATCAGAGGGATGTTCCCT  650

seq1  GATCTGCTTCTCCTTGCAGCAAGGACTCCAGTAGGCACTCATATTGTCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGCTTCTCCTTGCAGCAAGGACTCCAGTAGGCACTCATATTGTCCT  700

seq1  CCCAGGACGCACATGGTCAGT-AAAAGAGAGAATGTTGAATTGTGCATGG  749
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CCCAGGACGCACATGGTCAGTAAAAAGAGAGAATGTTGAATTGTGCATGG  750

seq1  TATTTCTGGTACCCAATTACTTGTTACA-TTCATTAAGTAACAGAACATG  798
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TATTTCTGGTACCCAATTACTTGTTACATTTCATTAAGTAACAGAACATG  800

seq1  GCTAGTCTGACAACAGCTATTGTGTAAATGAATAGAGAAAGGATGCCTCG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGTCTGACAACAGCTATTGTGTAAATGAATAGAGAAAGGATGCCTCG  850

seq1  AATTTCTGAACTGGTCGCCATATTTAAAAACAAAAGAGAAGGTACTTCTT  898
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AATTTCTGAACTGGTCGCCATATTTAAAAACAAAAGAG-AGGTACTTCTT  899

seq1  CATTTCTCTATGTTCTATGCTTTGGGACTGTGTATATTTTATATTGTTCT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CATTTCTCTATGTTCTATGCTTTGGGACTGTGTATATTTTATATTGTTC-  948

seq1  TATGATTAACATTGATAATTTAAAAGTTAAAGAAAGAATATATTTTAGGT  998
      |||||||||||||||||||||||||||||||||||| ||||| |||||||
seq2  TATGATTAACATTGATAATTTAAAAGTTAAAGAAAG-ATATA-TTTAGGT  996

seq1  CTTTGGCTACTCCTGATTCTCTGCAACCCTACCATTATTTACAAAATAGA  1048
      ||||||||||| |||||||||||| ||||||||| |||||||||||| ||
seq2  CTTTGGCTACT-CTGATTCTCTGC-ACCCTACCA-TATTTACAAAAT-GA  1042

seq1  GGAAAAAAGTTTTGCATTGAATATTTCATAAATATCAAATATTCTTATAC  1098
      |  |||||| |||||| || |||||||||||   ||||       ||| |
seq2  G--AAAAAG-TTTGCA-TGGATATTTCATAAGATTCAA-------TAT-C  1080

seq1  AATAATA-AAATATACAATCACAGTTTCCCCAAGACCTATTTACTGTATT  1147
       || |||   | |||| |||||||||| ||||||| ||||||||||   |
seq2  TATCATATTTAGATACCATCACAGTTT-CCCAAGA-CTATTTACTGGTAT  1128

seq1  ATTCATGTGTGTAACTCTTTAATTGTTCTGGGCATTGAACACTAG  1192
      |||||||| |||||| |||  |||||||||||   || |||||||
seq2  ATTCATGT-TGTAAC-CTT--ATTGTTCTGGGGCATGGACACTAG  1169