BAC Information

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BAC

Clone NameB6Ng01-109J09
Chromosome6 (Build37)
Map Location 129,039,820 - 129,200,962
singlet/doubletdoublet
Overlap geneClec2e, Klrb1-ps1, Clec2d
Upstream geneTspan9, LOC100043853, LOC667560, Tead4, LOC652986, Tulp3, 5930416I19Rik, Foxm1, Nrip2, Itfg2, Fkbp4, EG667598, Pzp, LOC384494, EG667610, BC048546, Klrb1a, EG545878, LOC677440, Clec2h, LOC100043863, LOC100043861, Klrb1c, LOC100043862, Klrb1d, LOC667706, Clec2i, Clec2g, LOC667715, BC064078, Clec2f, Klrb1f
Downstream geneCd69, 4922502D21Rik, Clec12a, 4933425B16Rik, Clec1b, Clec9a, Clec1a, Clec7a, Olr1, D630042F21Rik, Gabarapl1, Klre1, Klrd1, Klrk1, Klrc3, Klrc2, Klrc1, LOC640755, Klri1, Klri2, Gm156, Klra17, Klra5, LOC667764, Klra6, LOC100038893, LOC100038894, LOC100038895, Klra4, LOC667769, LOC100038897, Klra8, EG654449, Klra9, Klra7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-109J09.bB6Ng01-109J09.g
ACCDH916457DH916458
length1,0071,093
definitionDH916457|Mus musculus domesticus DNA, BAC clone: B6Ng01-109J09, 5' end.DH916458|Mus musculus domesticus DNA, BAC clone: B6Ng01-109J09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(129,039,820 - 129,040,824)(129,199,857 - 129,200,962)
sequence
gaattctacattgactatcacaaaaatgtatctttcttacatatatggtt
caaacactcctgtgtttgatacactgtgctgttctctgagaatgcagaag
tggatcacacacaaaatctttctcattcgtttgctataaataagatggac
tgcaaatcagaaagacctaagtgcaataggaatagaacattgagaaaagt
atttttctgcatgagatatgcttgtattaatctaagaatggtcagggtaa
gcccagtggtggtggttcatatctagcatctcagaactagggagacagag
gcaggtagatctctgacttcaaaaccaacctggtctataaaggaaggcag
gactcaagatagccaagaatacacagagaaatcacatgtcaaaaaaccaa
agaaccaaaaagactataataaaaatacagattcaaaataaacacagtat
actacaaaaaaagaactttatatttttttaaatttcatttcaatgtgtgt
gtgtgtgtgtgtgtgtgcctgtgtgcctgtgtgtatgcatgtaaatgtgt
acagtgaaagcttgaagttcagagacaacttgctgtggatggttttatgt
ttccaacgtgtggatccgggtgttgaactcagtcttagtagtcggtgcct
ttaccatcagaatcatattcctatctctgaactaatactttaatagagag
caagactatgtgctgttatgtagcttctcccagccttgaagcacgctaat
tcagaccttgctgccactgagaatgagaccatctggggtggagccttctg
acctagatggctttattgtgttctgtcacctgcagctgctcttctccaaa
gatgcctctacccactgagaggctgaacctgtcttcctgagatattcctg
gagatagctaacaacctgtgggaattggcaacccaatgctaacagctctg
acagactattgctaacaacttagcaacaaagcatccaagaacctgggttg
gtagggg
gaattcttgtgggaacaaagttgactagatccttttcagtagttaagtca
gtttccatccctcttccctccctggaagagaagggtaagatttaaagggc
cactgctctaatcacatggtagcctttaccctgaagctattaggagccca
ccaaaatttaccttattactaaaacctcaggtatatatggttgaaagggg
ctggatgtgaacaactatagattgccctcacactcccaacactcaggcaa
gtctaagtattttagaagtttctatgtccaaaaccagaaacaagataaaa
cagtaagaaaatgttctatcagtcttatcatgcaggaaataagaaaaaac
tatatatgaacttgacaaaagacctgagtcaaaagcaactatattttctt
aaataacaataatacaatatgctgagtggagtagacatgaaaggtattac
agctgctttgggggtctgggggggaatcagtgccctcctcctgcctcaac
ctccctaccaagtgattatatgcatgaggtacaatgcccgggctgagaaa
cagtgtggtttgcatctcctgtagcacaaagcaagtgcaagaatcaacca
ttcttacatttcacagaagaatgagtaagtggagattttgtcactagcat
cttgagctgcctggtgatcaggccacaactcctgcaggagcccctccctc
tacagatagttaggcacaaacctctcctcctctggagctgattagctgca
ctttagggggtacatatcttggaccaaggccccaagacacatcttcagtt
cactggacttcctcagtgaagggccacatcataaaagaaggaaacagtaa
acaccttttggttctgtaggatgctgagctgggcattgaagcccaaggcc
aggcattcctctgttcaaggcaaggagcagccatgacccattttctattt
cttgttatttaggagttcagccagagcacaagtctttttttgacctgctt
ggatctgaggagcccttgattgatactgagaaaaactcagaggagccagc
accttaagagccataaaagtccctcttacctaaggcctattca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_129039820_129040824
seq2: B6Ng01-109J09.b_50_1056

seq1  GAATTCTACATTGACTATCACAAAAATGTATCTTTCTTACATATATGGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACATTGACTATCACAAAAATGTATCTTTCTTACATATATGGTT  50

seq1  CAAACACTCCTGTGTTTGATACACTGTGCTGTTCTCTGAGAATGCAGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACACTCCTGTGTTTGATACACTGTGCTGTTCTCTGAGAATGCAGAAG  100

seq1  TGGATCACACACAAAATCTTTCTCATTCGTTTGCTATAAATAAGATGGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCACACACAAAATCTTTCTCATTCGTTTGCTATAAATAAGATGGAC  150

seq1  TGCAAATCAGAAAGACCTAAGTGCAATAGGAATAGAACATTGAGAAAAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAATCAGAAAGACCTAAGTGCAATAGGAATAGAACATTGAGAAAAGT  200

seq1  ATTTTTCTGCATGAGATATGCTTGTATTAATCTAAGAATGGTCAGGGTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCTGCATGAGATATGCTTGTATTAATCTAAGAATGGTCAGGGTAA  250

seq1  GCCCAGTGGTGGTGGTTCATATCTAGCATCTCAGAACTAGGGAGACAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGTGGTGGTGGTTCATATCTAGCATCTCAGAACTAGGGAGACAGAG  300

seq1  GCAGGTAGATCTCTGACTTCAAAACCAACCTGGTCTATAAAGGAAGGCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTAGATCTCTGACTTCAAAACCAACCTGGTCTATAAAGGAAGGCAG  350

seq1  GACTCAAGATAGCCAAGAATACACAGAGAAATCACATGTCAAAAAACCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAAGATAGCCAAGAATACACAGAGAAATCACATGTCAAAAAACCAA  400

seq1  AGAACCAAAAAGACTATAATAAAAATACAGATTCAAAATAAACACAGTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCAAAAAGACTATAATAAAAATACAGATTCAAAATAAACACAGTAT  450

seq1  ACTACAAAAAAAGAACTTTATATTTTTTTAAATTTCATTTCAATGTGTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACAAAAAAAGAACTTTATATTTTTTTAAATTTCATTTCAATGTGTGT  500

seq1  GTGTGTGTGTGTGTGTGCCTGTGTGCCTGTGTGTATGCATGTAAATGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGCCTGTGTGCCTGTGTGTATGCATGTAAATGTGT  550

seq1  ACAGTGAAAGCTTGAAGTTCAGAGACAACTTGCTGTGGATGGTTTTATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGAAAGCTTGAAGTTCAGAGACAACTTGCTGTGGATGGTTTTATGT  600

seq1  TTCCAACGTGTGGATCCGGGTGTTGAACTCAGTCTTAGTAGTCGGTGCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAACGTGTGGATCCGGGTGTTGAACTCAGTCTTAGTAGTCGGTGCCT  650

seq1  TTACCATCAGAATCATATTCCTATCTCTGAACTAATACTTTAATAGAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCATCAGAATCATATTCCTATCTCTGAACTAATACTTTAATAGAGAG  700

seq1  CAAGACTATGTGCTGTTATGTAGCTTCTCCCAGCCTTGAAGCAGGCTAAT  750
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CAAGACTATGTGCTGTTATGTAGCTTCTCCCAGCCTTGAAGCACGCTAAT  750

seq1  TCAGACCTTGCTGCCACTGAGAATGAGACCATCTGGGGTGGAGCCTTCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACCTTGCTGCCACTGAGAATGAGACCATCTGGGGTGGAGCCTTCTG  800

seq1  ACCTAGATGGCTTTATTGTTGTTCTGTCACCTGCAGCTGCTCTTCTCC-A  849
      |||||||||||||||||| ||||||||||||||||||||||||||||| |
seq2  ACCTAGATGGCTTTATTG-TGTTCTGTCACCTGCAGCTGCTCTTCTCCAA  849

seq1  AGATGCCTCTACCCACTGAGAGGCTGAACCTGTCTTCCTGAGATATTCCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCCTCTACCCACTGAGAGGCTGAACCTGTCTTCCTGAGATATTCCT  899

seq1  -GAGATAGCTAACAACCTGT-GGAATTGGCAACCCAATGCTAACAGCTCT  947
       ||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GGAGATAGCTAACAACCTGTGGGAATTGGCAACCCAATGCTAACAGCTCT  949

seq1  GACAGACTAGTGCTAACAACTTAGCAACAAAGCAT-CAAGAAGCCTGGTG  996
      ||||||||| ||||||||||||||||||||||||| |||||| |||||  
seq2  GACAGACTATTGCTAACAACTTAGCAACAAAGCATCCAAGAA-CCTGGGT  998

seq1  TGGTAGGGG  1005
      |||||||||
seq2  TGGTAGGGG  1007

seq1: chr6_129199857_129200962
seq2: B6Ng01-109J09.g_67_1159 (reverse)

seq1  TGAATAGACCTTAGGTATAGAGGGACATTTTATAGGCTCTTTTAGGTGCT  50
      ||||||| ||||||||| |||||||| |||||| ||||| || |||||||
seq2  TGAATAGGCCTTAGGTA-AGAGGGAC-TTTTAT-GGCTC-TTAAGGTGCT  46

seq1  GGGCTCCTCTGAGTTTTTCTCAGTATC-ATCAAGGCTTCCTCAGGATCCC  99
       |||||||||||||||||||||||||| |||||||  |||||| ||| ||
seq2  -GGCTCCTCTGAGTTTTTCTCAGTATCAATCAAGGGCTCCTCA-GAT-CC  93

seq1  AGGCAGGTCAGAAAAAGGACTTGTGGCTCTGGCTGAACTCCTAATTAACC  149
      | |||||||| ||||| ||||||| ||||||||||||||||||| |||| 
seq2  AAGCAGGTCA-AAAAAAGACTTGT-GCTCTGGCTGAACTCCTAAATAACA  141

seq1  AGAAATAGACAATGGGTCATGGCCTGCCTCCTTTTGCCTTGAACAGAGGA  199
      ||||||||| |||||||||||| ||| ||||  |||||||||||||||||
seq2  AGAAATAGAAAATGGGTCATGG-CTG-CTCC--TTGCCTTGAACAGAGGA  187

seq1  ATGCCTGGCCTTGGGCCTTCAATGCCCAGCTCAGCATCCTACAGAACCAA  249
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ATGCCTGGCCTTGGG-CTTCAATGCCCAGCTCAGCATCCTACAGAACCAA  236

seq1  AAGGTGTTTACTGTTTCCTTCTTTTATGATGTGGCCCTTCACTGAGGAAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGTTTACTGTTTCCTTCTTTTATGATGTGGCCCTTCACTGAGGAAG  286

seq1  TCCAGTGAACTGAAGATGTGTCTTGGGGCCTTGGTCCAAGATATGTACCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTGAACTGAAGATGTGTCTTGGGGCCTTGGTCCAAGATATGTACCC  336

seq1  CCTAAAGTGCAGCTAATCAGCTCCAGAGGAGGAGAGGTTTGTGCCTAACT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAGTGCAGCTAATCAGCTCCAGAGGAGGAGAGGTTTGTGCCTAACT  386

seq1  ATCTGTAGAGGGAGGGGCTCCTGCAGGAGTTGTGGCCTGATCACCAGGCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTAGAGGGAGGGGCTCCTGCAGGAGTTGTGGCCTGATCACCAGGCA  436

seq1  GCTCAAGATGCTAGTGACAAAATCTCCACTTACTCATTCTTCTGTGAAAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAAGATGCTAGTGACAAAATCTCCACTTACTCATTCTTCTGTGAAAT  486

seq1  GTAAGAATGGTTGATTCTTGCACTTGCTTTGTGCTACAGGAGATGCAAAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGAATGGTTGATTCTTGCACTTGCTTTGTGCTACAGGAGATGCAAAC  536

seq1  CACACTGTTTCTCAGCCCGGGCATTGTACCTCATGCATATAATCACTTGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTGTTTCTCAGCCCGGGCATTGTACCTCATGCATATAATCACTTGG  586

seq1  TAGGGAGGTTGAGGCAGGAGGAGGGCACTGATTCCCCCCCAGACCCCCAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGAGGTTGAGGCAGGAGGAGGGCACTGATTCCCCCCCAGACCCCCAA  636

seq1  AGCAGCTGTAATACCTTTCATGTCTACTCCACTCAGCATATTGTATTATT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCTGTAATACCTTTCATGTCTACTCCACTCAGCATATTGTATTATT  686

seq1  GTTATTTAAGAAAATATAGTTGCTTTTGACTCAGGTCTTTTGTCAAGTTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTTAAGAAAATATAGTTGCTTTTGACTCAGGTCTTTTGTCAAGTTC  736

seq1  ATATATAGTTTTTTCTTATTTCCTGCATGATAAGACTGATAGAACATTTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATAGTTTTTTCTTATTTCCTGCATGATAAGACTGATAGAACATTTT  786

seq1  CTTACTGTTTTATCTTGTTTCTGGTTTTGGACATAGAAACTTCTAAAATA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTGTTTTATCTTGTTTCTGGTTTTGGACATAGAAACTTCTAAAATA  836

seq1  CTTAGACTTGCCTGAGTGTTGGGAGTGTGAGGGCAATCTATAGTTGTTCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGACTTGCCTGAGTGTTGGGAGTGTGAGGGCAATCTATAGTTGTTCA  886

seq1  CATCCAGCCCCTTTCAACCATATATACCTGAGGTTTTAGTAATAAGGTAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCAGCCCCTTTCAACCATATATACCTGAGGTTTTAGTAATAAGGTAA  936

seq1  ATTTTGGTGGGCTCCTAATAGCTTCAGGGTAAAGGCTACCATGTGATTAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGGTGGGCTCCTAATAGCTTCAGGGTAAAGGCTACCATGTGATTAG  986

seq1  AGCAGTGGCCCTTTAAATCTTACCCTTCTCTTCCAGGGAGGGAAGAGGGA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTGGCCCTTTAAATCTTACCCTTCTCTTCCAGGGAGGGAAGAGGGA  1036

seq1  TGGAAACTGACTTAACTACTGAAAAGGATCTAGTCAACTTTGTTCCCACA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAACTGACTTAACTACTGAAAAGGATCTAGTCAACTTTGTTCCCACA  1086

seq1  AGAATTC  1106
      |||||||
seq2  AGAATTC  1093