BAC Information

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BAC

Clone NameB6Ng01-109L06
Chromosome6 (Build37)
Map Location 134,091,016 - 134,221,115
singlet/doubletdoublet
Overlap geneEtv6
Upstream gene5530400C23Rik, EG545884, EG626372, LOC100043649, LOC100043653, EG545886, LOC622962, Kap, LOC100043655, LOC100043656, LOC668063
Downstream geneLOC100043660, Bcl2l14, Lrp6, Mansc1, Loh12cr1, LOC100043884, Dusp16, Crebl2, Gpr19, Cdkn1b, 1190002F15Rik, Apold1, Ddx47, Gprc5a, Gprc5d, LOC100043668, Hebp1, 8430419L09Rik, Gsg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-109L06.bB6Ng01-109L06.g
ACCDH916538DH916539
length1,0931,104
definitionDH916538|Mus musculus domesticus DNA, BAC clone: B6Ng01-109L06, 5' end.DH916539|Mus musculus domesticus DNA, BAC clone: B6Ng01-109L06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(134,220,004 - 134,221,115)(134,091,016 - 134,092,139)
sequence
gaattcccagatgattcaaattgagattgattggaaatcgttgtttcaaa
ggcacattagctcccccagaaagtgtctcctaaactttacttgattgagt
attctgacagtttagggtctaaaggccgatttcagcaatccagtacaggg
atgcccccagactgtgtgaagagagaaccagtctaatgtactctgccatc
agttttatattcccaagttccaaaacctactgccgtgctgctgctgggca
ccggcatctgcttcctctcacacactcggaagccctacctatcgtgaagg
caaacaaatcgttgtggcgactattacgttggatctttaagtttggtttt
ttttgagatgagatctcgtgcaacccaggctggcttcacacttgctatca
gaggacgcggacattgagctcctggtcctcctattcctccagcttccatg
tgctgcgtctacagctgtgcaccggcatcgcctgctatgctgttggagtt
tgaaatttcagttgccctctggttggtggcagggaccagtgtgccagaga
cattgagtgcatagtctttggcaaccaggctgtgggtgctaccctcacat
ttatgtcttcactaccttgcaggagtgaaatcaaccagggtaacttaatc
cctgctgtcaccaagggacctggtccatccttggcatctctgactggagt
tccttgaggcagatttttctacctgtggcagcagctcagagtagagtgat
ctgctgtgaccttcctggggcctcttgtctaaagctggcctgcagaacgc
cgggtaacagcggcttcctgccaggagaaaccaggagtgcactttattcc
ataatagagtagacaggatttgcatcatcagagtgccttgcctgtctgac
tccatttcatattattaaaacagagacttgggacttgatttttttttttt
ataaaaatttattgagatgatgtaatataggtttttctttaaaatatttg
cactcactggccctgagaaagcatttttgtttgttttttttctttttgta
catcatttgattcagtccctataaacccacacctcaaacaaga
gaattcagtggtcaccaactctgaggttgggccatacacatcccagctga
gtttccaagcttaaaagaataaaatgaatactcgggcaagggaattgggt
tgctgctgttttaatccaggattccagacaattcccagtagaatgcgcat
ggaaagtccggggaagagtctgggaggcaggacagcagcaggacatttat
ggcattacaaggatgagcacattctcagaggctcgttttaaaagaagagc
cagcctggctcccgctcactgctctccagctgtagcttctcgatcttacc
tttcttttcttctgacatccttaaatgaagataagatttggaaatcgggg
gagggcaggagtctcatagccaagattctcacgcagtcttaccactgtgt
tagacaaacacaagtctactaaagacccccacctggcaaattagcacaga
ggctttgcagacgtgataaaggggaagtgataaatgaaacaagtgctaag
taacgatcatgaggtgcaaaaaggacatgcaggataatacaggcctaggt
gcccagagctgcagatgatgctgttcagcagtcctactgacctccctgtt
catgggaggacagatacgttatggaaaggataggaagggcatgtttctcc
tcctcttctccttctcccctcttctgcaaagcattctgaatcatttataa
gcctaagggtagaagggctgaggtatagtcacagcagtccatgaagaaca
aaggctcccttctttatactgagcatcagtctctgtgtccctgtgagaac
acctcagcaccccaggggttcagggttgggctcactggtgatccccacca
ttgcatggaaagaggaagtcttttccctgtgctcttggggactgggggac
agtatgggacttacaaatgaggcctcacagcatgctaccactgctgtcct
gtagatttgcatcccgtgaccagatgtctgagcaaacagacttaagagag
ctttatttggtccatggttctgtactctgatctgtgcactgactcctctc
tgggtgtgtggcagcagaatagcatagcacatagctgccaggagcagaga
cagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_134220004_134221115
seq2: B6Ng01-109L06.b_50_1142 (reverse)

seq1  TCTTGTTTATGAGGTGTGGGGTTTATAAGGGACTGAATCAAATGAATGTA  50
      |||||||  |||||||| |||||||| ||||||||||||||||| |||| 
seq2  TCTTGTT--TGAGGTGT-GGGTTTAT-AGGGACTGAATCAAATG-ATGT-  44

seq1  ACAAAAAAAGAAAAAAAAACAAACAAAAAATGCCTTTTCTCAGGGCCAGT  100
      |||||||    ||||||||||||| ||||||||  |||||||||||||||
seq2  ACAAAAA---GAAAAAAAACAAAC-AAAAATGC--TTTCTCAGGGCCAGT  88

seq1  GAGTTGCAAATAATTTTTAAAGAAAAACCTATAATTACATCATCTCAATA  150
      ||| ||||||||  |||||||||||||||||| |||||||||||||||||
seq2  GAG-TGCAAATA--TTTTAAAGAAAAACCTAT-ATTACATCATCTCAATA  134

seq1  AATTTTTTATAAAAAAAAAAAAATCAAGTCCCAAGTCTCTGTTTTTAATA  200
      || ||||||| |||||||||||||||||||||||||||||| ||||||||
seq2  AA-TTTTTAT-AAAAAAAAAAAATCAAGTCCCAAGTCTCTG-TTTTAATA  181

seq1  ATATGAAATGGAGTCAGACAGGCAAGGCACTCTGATGATGCAAATCCTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAAATGGAGTCAGACAGGCAAGGCACTCTGATGATGCAAATCCTGT  231

seq1  CTACTCTATTATGGAATAAAGTGCACTCCTGGTTTCTCCTGGCAGGAAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTCTATTATGGAATAAAGTGCACTCCTGGTTTCTCCTGGCAGGAAGC  281

seq1  CGCTGTTACCCGGCGTTCTGCAGGCCAGCTTTAGACAAGAGGCCCCAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTGTTACCCGGCGTTCTGCAGGCCAGCTTTAGACAAGAGGCCCCAGGA  331

seq1  AGGTCACAGCAGATCACTCTACTCTGAGCTGCTGCCACAGGTAGAAAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCACAGCAGATCACTCTACTCTGAGCTGCTGCCACAGGTAGAAAAAT  381

seq1  CTGCCTCAAGGAACTCCAGTCAGAGATGCCAAGGATGGACCAGGTCCCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCAAGGAACTCCAGTCAGAGATGCCAAGGATGGACCAGGTCCCTT  431

seq1  GGTGACAGCAGGGATTAAGTTACCCTGGTTGATTTCACTCCTGCAAGGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACAGCAGGGATTAAGTTACCCTGGTTGATTTCACTCCTGCAAGGTA  481

seq1  GTGAAGACATAAATGTGAGGGTAGCACCCACAGCCTGGTTGCCAAAGACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGACATAAATGTGAGGGTAGCACCCACAGCCTGGTTGCCAAAGACT  531

seq1  ATGCACTCAATGTCTCTGGCACACTGGTCCCTGCCACCAACCAGAGGGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACTCAATGTCTCTGGCACACTGGTCCCTGCCACCAACCAGAGGGCA  581

seq1  ACTGAAATTTCAAACTCCAACAGCATAGCAGGCGATGCCGGTGCACAGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAATTTCAAACTCCAACAGCATAGCAGGCGATGCCGGTGCACAGCT  631

seq1  GTAGACGCAGCACATGGAAGCTGGAGGAATAGGAGGACCAGGAGCTCAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGACGCAGCACATGGAAGCTGGAGGAATAGGAGGACCAGGAGCTCAAT  681

seq1  GTCCGCGTCCTCTGATAGCAAGTGTGAAGCCAGCCTGGGTTGCACGAGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCGCGTCCTCTGATAGCAAGTGTGAAGCCAGCCTGGGTTGCACGAGAT  731

seq1  CTCATCTCAAAAAAAACCAAACTTAAAGATCCAACGTAATAGTCGCCACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCTCAAAAAAAACCAAACTTAAAGATCCAACGTAATAGTCGCCACA  781

seq1  ACGATTTGTTTGCCTTCACGATAGGTAGGGCTTCCGAGTGTGTGAGAGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGATTTGTTTGCCTTCACGATAGGTAGGGCTTCCGAGTGTGTGAGAGGA  831

seq1  AGCAGATGCCGGTGCCCAGCAGCAGCACGGCAGTAGGTTTTGGAACTTGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGATGCCGGTGCCCAGCAGCAGCACGGCAGTAGGTTTTGGAACTTGG  881

seq1  GAATATAAAACTGATGGCAGAGTACATTAGACTGGTTCTCTCTTCACACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATAAAACTGATGGCAGAGTACATTAGACTGGTTCTCTCTTCACACA  931

seq1  GTCTGGGGGCATCCCTGTACTGGATTGCTGAAATCGGCCTTTAGACCCTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGGGGCATCCCTGTACTGGATTGCTGAAATCGGCCTTTAGACCCTA  981

seq1  AACTGTCAGAATACTCAATCAAGTAAAGTTTAGGAGACACTTTCTGGGGG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTCAGAATACTCAATCAAGTAAAGTTTAGGAGACACTTTCTGGGGG  1031

seq1  AGCTAATGTGCCTTTGAAACAACGATTTCCAATCAATCTCAATTTGAATC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAATGTGCCTTTGAAACAACGATTTCCAATCAATCTCAATTTGAATC  1081

seq1  ATCTGGGAATTC  1112
      ||||||||||||
seq2  ATCTGGGAATTC  1093

seq1: chr6_134091016_134092139
seq2: B6Ng01-109L06.g_65_1168

seq1  GAATTCAGTGGTCACCAACTCTGAGGTTGGGCCATACACATCCCAGCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGGTCACCAACTCTGAGGTTGGGCCATACACATCCCAGCTGA  50

seq1  GTTTCCAAGCTTAAAAGAATAAAATGAATACTCGGGCAAGGGAATTGGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCAAGCTTAAAAGAATAAAATGAATACTCGGGCAAGGGAATTGGGT  100

seq1  TGCTGCTGTTTTAATCCAGGATTCCAGACAATTCCCAGTAGAATGCGCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCTGTTTTAATCCAGGATTCCAGACAATTCCCAGTAGAATGCGCAT  150

seq1  GGAAAGTCCGGGGAAGAGTCTGGGAGGCAGGACAGCAGCAGGACATTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGTCCGGGGAAGAGTCTGGGAGGCAGGACAGCAGCAGGACATTTAT  200

seq1  GGCATTACAAGGATGAGCACATTCTCAGAGGCTCGTTTTAAAAGAAGAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTACAAGGATGAGCACATTCTCAGAGGCTCGTTTTAAAAGAAGAGC  250

seq1  CAGCCTGGCTCCCGCTCACTGCTCTCCAGCTGTAGCTTCTCGATCTTACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGGCTCCCGCTCACTGCTCTCCAGCTGTAGCTTCTCGATCTTACC  300

seq1  TTTCTTTTCTTCTGACATCCTTAAATGAAGATAAGATTTGGAAATCGGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTCTTCTGACATCCTTAAATGAAGATAAGATTTGGAAATCGGGG  350

seq1  GAGGGCAGGAGTCTCATAGCCAAGATTCTCACGCAGTCTTACCACTGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGCAGGAGTCTCATAGCCAAGATTCTCACGCAGTCTTACCACTGTGT  400

seq1  TAGACAAACACAAGTCTACTAAAGACCCCCACCTGGCAAATTAGCACAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACAAACACAAGTCTACTAAAGACCCCCACCTGGCAAATTAGCACAGA  450

seq1  GGCTTTGCAGACGTGATAAAGGGGAAGTGATAAATGAAACAAGTGCTAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTGCAGACGTGATAAAGGGGAAGTGATAAATGAAACAAGTGCTAAG  500

seq1  TAACGATCATGAGGTGCAAAAAGGACATGCAGGATAATACAGGCCTAGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACGATCATGAGGTGCAAAAAGGACATGCAGGATAATACAGGCCTAGGT  550

seq1  GCCCAGAGCTGCAGATGATGCTGTTCAGCAGTCCTACTGACCTCCCTGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGAGCTGCAGATGATGCTGTTCAGCAGTCCTACTGACCTCCCTGTT  600

seq1  CATGGGAGGACAGATACGTTATGGAAAGGATAGGAAGGGCATGTTTCTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGAGGACAGATACGTTATGGAAAGGATAGGAAGGGCATGTTTCTCC  650

seq1  TCCTCTTCTCCTTCTCCCCTCTTCTGCAAAGCATTCTGAATCATTTATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTTCTCCTTCTCCCCTCTTCTGCAAAGCATTCTGAATCATTTATAA  700

seq1  GCCTAAGGGTAGAAGGGCTGAGGTATAGTCACAGCAGTCCATGAAGAACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAAGGGTAGAAGGGCTGAGGTATAGTCACAGCAGTCCATGAAGAACA  750

seq1  AAGGCTCCCTTCTTTATACTGAGCATCAGTCTCTGTGTCCCTGTGAGAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTCCCTTCTTTATACTGAGCATCAGTCTCTGTGTCCCTGTGAGAAC  800

seq1  ACCTCAGCACCCCAGGGGTTCAGGGTTGGGCTCACTGGTGATCCCCACCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCAGCACCCCAGGGGTTCAGGGTTGGGCTCACTGGTGATCCCCACCA  850

seq1  TTGCATGGAAAGAGGAAGTCTTTTCCCTGTGCTCTTGGGGACTGGGGGAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATGGAAAGAGGAAGTCTTTTCCCTGTGCTCTTGGGGACTGGGGGAC  900

seq1  AGTATGGGACTTACAAATGAGGCCTCACAGCATGCTACCACTGCTGTCCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGGGACTTACAAATGAGGCCTCACAGCATGCTACCACTGCTGTCCT  950

seq1  GTTAGATTTGCATCCCCGTGACCAGATGTCTGAGCAAACAGACTTAAAAG  1000
      | ||||||||||| |||||||||||||||||||||||||||||||||   
seq2  G-TAGATTTGCAT-CCCGTGACCAGATGTCTGAGCAAACAGACTTAA---  995

seq1  GAAGAGCTTTATTTTGGTCCATGGTTCTGTACTCTGAATCTGTGGCCACT  1050
        ||||||||| |||||||||||||||||||||||| |||||||  ||||
seq2  -GAGAGCTTTA-TTTGGTCCATGGTTCTGTACTCTG-ATCTGTG--CACT  1040

seq1  GACTCCTTCCTTCTGGGTGTGTGGCAAGGCAGGACATAGCAATAGCACAA  1100
      |||||||    |||||||||||||||  ||||   ||||| ||||||| |
seq2  GACTCCT---CTCTGGGTGTGTGGCA--GCAG--AATAGC-ATAGCAC-A  1081

seq1  TAGCTGCCAGGAAGCAGAGACAGG  1124
      ||||||||||| ||||||||||||
seq2  TAGCTGCCAGG-AGCAGAGACAGG  1104