BAC Information

Click to search

BAC

Clone NameB6Ng01-109N10
Chromosome6 (Build37)4 (Build37)
Map Location 18,571,100 - 18,571,483131,870,809 - 131,871,980
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneCapza2, St7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2
Downstream geneEG545829, Lsm8, Ankrd7, LOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-109N10.bB6Ng01-109N10.g
ACCDH916633DH916634
length3971,159
definitionDH916633|Mus musculus domesticus DNA, BAC clone: B6Ng01-109N10, 5' end.DH916634|Mus musculus domesticus DNA, BAC clone: B6Ng01-109N10, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,571,100 - 18,571,483)(131,870,809 - 131,871,980)
sequence
accaacttgcttctaatatgcaatgtagcctactatacctggctgtagtg
aagattctaagtatactttgctaagcttgccctgaaatatctaactctta
tgtagtaaaatactgtaagaaagcatgtaagacgctccacgatattgcag
ggacaaatctggggcattttagctatgggaatgctatggttccaggaggc
tgagtttccttgaagctctttgcctcaggactgcttccaggtttttaggc
ctgccaagcgagtcactactgcagtggatgtagcatttgcaatgtgtata
tgtatatatgtgcattaagtatatgtgcatatgtgtatttctatatatgt
gtacatgtgtatatgtgtatggtgtatgtgtgtacatgtgtatggtg
gaattcagttcccagcaaccacatggtggctcacaaccatctgtaatggg
atctgatgccttcttctggtgtgtctgaggggagtgacagggtactcata
taaaataaataaatcttttttaaagggttttttatgtaatttacatatat
ggatgttttgcattggatctcagagagctgtaaactgtcattccggtgct
cagaactgaactcaggacccctggaagaacagtcagtgctcttaaccgct
aagccatctcttcaacccctttctcaagatcttgggagacagttgcaaaa
actcaggaaaacacagcataaaaaatctgggctagctgggcagtgatgac
acaccatctttaatcccagcactcgggaggcacagttggaggacaggctg
gcctacagagtgagttccaagacagacaaggctacatagagaaactcttg
ccctcaaaatgataaaaacatacaattaaaaaaataaattgagggctggt
gagatggctcagtaagtaagagcacccgactgctcttccgaaggtccgga
gttcaaatcccagcaaccacatggtggctcacaaccatcctaacgagatc
tgactccctcttctggagtgtctgaagacagctacagtgtacttacatat
aaataaataaatctttaaaaaataaataaataaataaataaataaataaa
tagaaaatctgggtgccgggcatggtggtgcccgcctttaatcccagcac
tcgggaggcagaggcaggcagatttctaagttcgaggccagcctggtcta
caaagtgagttccaggacagccagggctatacgagaaaatcctattttcg
aaaacaaaaacaacaaaaatagaaaatctgggtttaagatgattcagatg
gacttcaactttagcctgtgacatcgccttgcctgcactgcagcacccct
agtctctgcaggattgttaattgctgtgaatgaatagccttgcttcatgc
taagcaatgctcgacttgagcgctcccctcccaagctgccttatttgttg
agtcttggcttgggacgtgactttacagtgctgggaataaattaaaggtg
atgataccttatcgtccctctatccatggaagaaactgacctcttaccag
ttggaagtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_18571100_18571483
seq2: B6Ng01-109N10.b_401_452 (reverse)

seq1  CACCATACACACAAATATAGACAGAGTATACACACATTTGCTACACACTC  50
                                                        
seq2  --------------------------------------------------  0

seq1  CATACACACACTTGCTACACATACCATACCCCTAGACACTCTACACACAC  100
                                                        
seq2  --------------------------------------------------  0

seq1  ATTTGCTACACATACCACACACACACACACACACACACACACACACACAC  150
                                                        
seq2  --------------------------------------------------  0

seq1  ACACTACACACACTTTTGTTATACATACCACATCACACATCACAAACACA  200
                                                        
seq2  --------------------------------------------------  0

seq1  TACACACATACACTACACACACATTTGCTACAACATCACAGCACATACAC  250
                                                        
seq2  --------------------------------------------------  0

seq1  ACACACTACACACAGATATGCTACAATACCATACCACACACACACACACA  300
                                                        
seq2  --------------------------------------------------  0

seq1  CACACACACACACACACACACACACACACACTACACTCTCATTTGCTACA  350
                                |||  ||||    ||| | | |||
seq2  --------------------------CACCATACA----CATGTAC-ACA  19

seq1  CATACCATATCACACACATACACATGTACACATA  384
      |||||   || ||||| |||||||||||||||||
seq2  CATACACCAT-ACACATATACACATGTACACATA  52

seq1: chr4_131870809_131871980
seq2: B6Ng01-109N10.g_68_1226

seq1  GAATTCAGTTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGGG  50

seq1  ATCTGATGCCTTCTTCTGGTGTGTCTGAGGGGAGTGACAGGGTACTCATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGATGCCTTCTTCTGGTGTGTCTGAGGGGAGTGACAGGGTACTCATA  100

seq1  TAAAATAAATAAATCTTTTTTAAAGGGTTTTTTATGTAATTTACATATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAAATAAATCTTTTTTAAAGGGTTTTTTATGTAATTTACATATAT  150

seq1  GGATGTTTTGCATTGGATCTCAGAGAGCTGTAAACTGTCATTCCGGTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTTTTGCATTGGATCTCAGAGAGCTGTAAACTGTCATTCCGGTGCT  200

seq1  CAGAACTGAACTCAGGACCCCTGGAAGAACAGTCAGTGCTCTTAACCGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACTGAACTCAGGACCCCTGGAAGAACAGTCAGTGCTCTTAACCGCT  250

seq1  AAGCCATCTCTTCAACCCCTTTCTCAAGATCTTGGGAGACAGTTGCAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCATCTCTTCAACCCCTTTCTCAAGATCTTGGGAGACAGTTGCAAAA  300

seq1  ACTCAGGAAAACACAGCATAAAAAATCTGGGCTAGCTGGGCAGTGATGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGGAAAACACAGCATAAAAAATCTGGGCTAGCTGGGCAGTGATGAC  350

seq1  ACACCATCTTTAATCCCAGCACTCGGGAGGCACAGTTGGAGGACAGGCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCATCTTTAATCCCAGCACTCGGGAGGCACAGTTGGAGGACAGGCTG  400

seq1  GCCTACAGAGTGAGTTCCAAGACAGACAAGGCTACATAGAGAAACTCTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTACAGAGTGAGTTCCAAGACAGACAAGGCTACATAGAGAAACTCTTG  450

seq1  CCCTCAAAATGATAAAAACATACAATTAAAAAAATAAATTGAGGGCTGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCAAAATGATAAAAACATACAATTAAAAAAATAAATTGAGGGCTGGT  500

seq1  GAGATGGCTCAGTAAGTAAGAGCACCCGACTGCTCTTCCGAAGGTCCGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGGCTCAGTAAGTAAGAGCACCCGACTGCTCTTCCGAAGGTCCGGA  550

seq1  GTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCTAACGAGATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCTAACGAGATC  600

seq1  TGACTCCCTCTTCTGGAGTGTCTGAAGACAGCTACAGTGTACTTACATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCCCTCTTCTGGAGTGTCTGAAGACAGCTACAGTGTACTTACATAT  650

seq1  AAATAAATAAATCTTTAAAAAATAAATAAATAAATAAATAAATAAATAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATAAATCTTTAAAAAATAAATAAATAAATAAATAAATAAATAAA  700

seq1  TAGAAAATCTGGGTGCCGGGCATGGTGGTGCCCGCCTTTAATCCCAGCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAATCTGGGTGCCGGGCATGGTGGTGCCCGCCTTTAATCCCAGCAC  750

seq1  TCGGGAGGCAGAGGCAGGCAGATTTCTAAGTTCGAGGCCAGCCTGGTCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGGAGGCAGAGGCAGGCAGATTTCTAAGTTCGAGGCCAGCCTGGTCTA  800

seq1  CAAAGTGAGTTCCAGGACAGCCAGGGCTATACGAG-AAATCCTATTTCGA  849
      ||||||||||||||||||||||||||||||||||| |||||||||||   
seq2  CAAAGTGAGTTCCAGGACAGCCAGGGCTATACGAGAAAATCCTATTTTCG  850

seq1  AAAACAAAAACAAACAAAAAATAGAAAATCTGGGTTTAAGATGATTCAAG  899
      |||||||||||||   ||||||||||||||||||||||||||||||| ||
seq2  AAAACAAAAACAA--CAAAAATAGAAAATCTGGGTTTAAGATGATTC-AG  897

seq1  ATGGACTTCAAACTTTAGCCTGTGACATCGCCTTGCCTGCACTGCAGCAC  949
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACTTC-AACTTTAGCCTGTGACATCGCCTTGCCTGCACTGCAGCAC  946

seq1  CCCTAGTCTCTGCAGGAATGTTAATTGCTGTGGAATGAATAGCCTTGC-T  998
      ||||||||||||||||| ||||||||||||| |||||||||||||||| |
seq2  CCCTAGTCTCTGCAGGATTGTTAATTGCTGT-GAATGAATAGCCTTGCTT  995

seq1  CATGCTAAGCAATGCTCGACCTTGAGCGCTCCCCTCCCACAGCTGCCTTA  1048
      ||||||||||||||||||| ||||||||||||||||||| ||||||||||
seq2  CATGCTAAGCAATGCTCGA-CTTGAGCGCTCCCCTCCCA-AGCTGCCTTA  1043

seq1  TTTGTTGAGTTCCTTGGGCTTTGGACGTGACTTTTACAGTGCTGGGGATA  1098
      ||||||||||  ||| ||||| ||||||||| |||||||||||||| |||
seq2  TTTGTTGAGT--CTT-GGCTTGGGACGTGAC-TTTACAGTGCTGGGAATA  1089

seq1  AATATAATAGGGTGATGATA-CTTATCGTCCCCTCATCCCATGGAGAAAA  1147
      |||  ||   |||||||||| |||||||| |||||   |||||||  |||
seq2  AATTAAA---GGTGATGATACCTTATCGT-CCCTCTATCCATGGAAGAAA  1135

seq1  CTGAACCTCTGAACAGTTGGGAGTG  1172
      ||| |||||| | ||||||| ||||
seq2  CTG-ACCTCTTACCAGTTGGAAGTG  1159