BAC Information

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BAC

Clone NameB6Ng01-110C22
Chromosome6 (Build37)
Map Location 40,050,713 - 40,169,648
singlet/doubletdoublet
Overlap geneEG434008
Upstream geneParp12, 4930599N23Rik, A630082K20Rik, Slc37a3, Rab19, Mkrn1, ENSMUSG00000068601, Dennd2a, Adck2, Ndufb2, Braf, Fth-ps2, Mrps33, LOC665247, LOC665254
Downstream geneAgk, E330009J07Rik, BC052883, Ssbp1, Tas2r137, Tas2r108, 1700016G05Rik, LOC669661, Olfr461, Olfr460, Clec5a, Tas2r138, Mgam, EG638904, Moxd2, LOC621968, BC048599, 1700074P13Rik, LOC194360, 1810009J06Rik, LOC100040208, 2210010C04Rik, LOC100039790, Tcrb-V8.2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-110C22.bB6Ng01-110C22.g
ACCDH916879DH916880
length1,154887
definitionDH916879|Mus musculus domesticus DNA, BAC clone: B6Ng01-110C22, 5' end.DH916880|Mus musculus domesticus DNA, BAC clone: B6Ng01-110C22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,168,462 - 40,169,648)(40,050,713 - 40,051,525)
sequence
gaattcatttctcctgtctccatagcacataccatagggtctcttggtga
tattggtagcaatgacataaagccactcagggaagagaggaatatcagca
aagatagttatttaaaaagagaggtgtctccccagcagttatcagcaccg
cctgcccttctagaggacctggggttcagctcccagcaaccaccatccag
aggacttgacaccctgtctggtctctgtagacactgcataatattgtgta
taaacatacactcgggtaaaaaaatacccatacacataaaacataataat
aaaatgaaaacagatttagaaaagaagcatctcagtgctaaaataataaa
acaccaaagccttttatggggacagtacctggtattgttgtaagtccttc
agatgagttaactctgtaattctcacagctatgcttgaattgagaactat
tattagctctttttaatagatgagaaaattgaagcaaggcatgaaaggca
gataaggaacgttccaatgtcatatggctagcccggtgttccttaggtcc
tggactatatcttcatgaaaacccgtaattatctcttttcattgggtgac
tctgcttcctgatcaaggactctgggctcccagttaggaggcaggatatg
gcaggtggctcatatggccaagtgtgcttgggaacatctaagaggcaagg
gtttagtttccataacgacttttttgataccttcaccaaccacctccctc
ccaccccttccctgtcctgtctcagcattttatctcagaatctaataaga
aagcatccacctgtcttaaccaggacatggtaaggtagcagacttgaatc
ttttgtgagtagattatagagcctcctaatgtgattgtcacagtggccag
ggatgcgtactgtcctatatgagctgatatttacaacaggatggcacact
ggtgcatgtacaaccccttaagtctcagtctccctgcgtctggctgctac
cttgccacggctccgtgtaaagtaacctgatgattcccaatctcctgaca
catgtctccctcccctaatgacattacttccaatgtgctcctcaaggatt
ggttttgatgtatatcatgctataaattccagctatataccttgcaaggt
gtga
gaattccaactgggagaaccggcaaaggcaaaggcgtgcgtgtgtgtgtg
tgtatgtgtgtgtgtgtgtgagagagagagagagagagagagagagagag
agagagagagatgcctagggtcagttgaagcagacaggatgagggacgtt
actgggcgatgacagaaggaataagataatttgtgtgcttggttcctggg
agcagaaaagctatggaagatattatccagaagaacagcatgtttaaata
gaaccctggcctgggaaggcaaggcaaacttggacggagggacagtagat
tttacttttaattgaaggttttaaaatatatttgataatatttttcttct
cttccaattcctcccagattccctcaaattccctacccacctaacttcat
actctctctttaacaaaaggccaatgcctccaagaaaattaaaacagaaa
cccaataagtaaaaaaaaaaaaatgctaaaacaggacaaaactgcacagt
ataaaaacatggactatgtttttgtattggccaaaactctagggcctgct
ttggaatgtggtcgatttacccagcggcaatcctttggagaagactggct
ctttctttccagcaggtatccgttacaaaataacttcttggttagaggtt
gggctttgtatctgcttccctcctctcagtactggggattctgtctggta
tgggacctggatagttggacttttggctacttcatgtgttcccttttcta
ccacccttctctactcttctcccttccaatcccccaacactagggtagga
gagaaagaagtttagaggaggaaggggacatcaatcctcattagacagct
tattggtgactaggggagtcaagttccttgggggaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_40168462_40169648
seq2: B6Ng01-110C22.b_49_1202 (reverse)

seq1  TCACACCCCTTGCAAGGTATATACCTGAATATTTATTAGCATTTGATAAT  50
      |||||  |||||||||||||||| ||| | ||||| |||||  |||||  
seq2  TCACA--CCTTGCAAGGTATATAGCTGGA-ATTTA-TAGCA--TGATA--  42

seq1  TACATTCAAAAACATATCCTTGAAGAGCACATTTTGGAAGTAAATGTCAT  100
      |||| |||||| || |||||||| |||||||  |||||||| ||||||| 
seq2  TACA-TCAAAACCA-ATCCTTGAGGAGCACA--TTGGAAGT-AATGTCA-  86

seq1  TTAGGGGA-GGAGACATGTTGTCAGGAAGATTGGGAAATACCATCCAGGT  149
      |||||||| ||||||||| ||||||| |||||||||   | ||| |||| 
seq2  TTAGGGGAGGGAGACATG-TGTCAGG-AGATTGGGA---ATCAT-CAGG-  129

seq1  TTACTTTACACGGAGCCCGTGGCCAGGGTAGCAGCCCAAGACGCAGGGAG  199
      ||||||||||||||| |||||| || ||||||||||  ||||||||||||
seq2  TTACTTTACACGGAG-CCGTGG-CAAGGTAGCAGCC--AGACGCAGGGAG  175

seq1  ACTTGAGACCTTAAGGGGTTGTAACATTGCCACCAGTGTTGCCATCCCTG  249
      || ||||| ||||||||||||| ||||   |||||||| |||||| ||||
seq2  AC-TGAGA-CTTAAGGGGTTGT-ACAT--GCACCAGTG-TGCCAT-CCTG  218

seq1  TTGTAAATATCAGCCTCATAATAGGACAGTACGCATCCCTGGCCACTGTG  299
      ||||||||||||| ||||| ||||||||||||||||||||||||||||||
seq2  TTGTAAATATCAG-CTCAT-ATAGGACAGTACGCATCCCTGGCCACTGTG  266

seq1  ACAATCACATTAGGAGGCTCTATAATCTACTCACAAAAGATTCAAGTCTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCACATTAGGAGGCTCTATAATCTACTCACAAAAGATTCAAGTCTG  316

seq1  CTACCTTACCATGTCCTGGTTAAGACAGGTGGATGCTTTCTTATTAGATT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTTACCATGTCCTGGTTAAGACAGGTGGATGCTTTCTTATTAGATT  366

seq1  CTGAGATAAAATGCTGAGACAGGACAGGGAAGGGGTGGGAGGGAGGTGGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGATAAAATGCTGAGACAGGACAGGGAAGGGGTGGGAGGGAGGTGGT  416

seq1  TGGTGAAGGTATCAAAAAAGTCGTTATGGAAACTAAACCCTTGCCTCTTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGAAGGTATCAAAAAAGTCGTTATGGAAACTAAACCCTTGCCTCTTA  466

seq1  GATGTTCCCAAGCACACTTGGCCATATGAGCCACCTGCCATATCCTGCCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTCCCAAGCACACTTGGCCATATGAGCCACCTGCCATATCCTGCCT  516

seq1  CCTAACTGGGAGCCCAGAGTCCTTGATCAGGAAGCAGAGTCACCCAATGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACTGGGAGCCCAGAGTCCTTGATCAGGAAGCAGAGTCACCCAATGA  566

seq1  AAAGAGATAATTACGGGTTTTCATGAAGATATAGTCCAGGACCTAAGGAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGATAATTACGGGTTTTCATGAAGATATAGTCCAGGACCTAAGGAA  616

seq1  CACCGGGCTAGCCATATGACATTGGAACGTTCCTTATCTGCCTTTCATGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCGGGCTAGCCATATGACATTGGAACGTTCCTTATCTGCCTTTCATGC  666

seq1  CTTGCTTCAATTTTCTCATCTATTAAAAAGAGCTAATAATAGTTCTCAAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTTCAATTTTCTCATCTATTAAAAAGAGCTAATAATAGTTCTCAAT  716

seq1  TCAAGCATAGCTGTGAGAATTACAGAGTTAACTCATCTGAAGGACTTACA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCATAGCTGTGAGAATTACAGAGTTAACTCATCTGAAGGACTTACA  766

seq1  ACAATACCAGGTACTGTCCCCATAAAAGGCTTTGGTGTTTTATTATTTTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATACCAGGTACTGTCCCCATAAAAGGCTTTGGTGTTTTATTATTTTA  816

seq1  GCACTGAGATGCTTCTTTTCTAAATCTGTTTTCATTTTATTATTATGTTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGAGATGCTTCTTTTCTAAATCTGTTTTCATTTTATTATTATGTTT  866

seq1  TATGTGTATGGGTATTTTTTTACCCGAGTGTATGTTTATACACAATATTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGTATGGGTATTTTTTTACCCGAGTGTATGTTTATACACAATATTA  916

seq1  TGCAGTGTCTACAGAGACCAGACAGGGTGTCAAGTCCTCTGGATGGTGGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTGTCTACAGAGACCAGACAGGGTGTCAAGTCCTCTGGATGGTGGT  966

seq1  TGCTGGGAGCTGAACCCCAGGTCCTCTAGAAGGGCAGGCGGTGCTGATAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGGAGCTGAACCCCAGGTCCTCTAGAAGGGCAGGCGGTGCTGATAA  1016

seq1  CTGCTGGGGAGACACCTCTCTTTTTAAATAACTATCTTTGCTGATATTCC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGGGGAGACACCTCTCTTTTTAAATAACTATCTTTGCTGATATTCC  1066

seq1  TCTCTTCCCTGAGTGGCTTTATGTCATTGCTACCAATATCACCAAGAGAC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCCCTGAGTGGCTTTATGTCATTGCTACCAATATCACCAAGAGAC  1116

seq1  CCTATGGTATGTGCTATGGAGACAGGAGAAATGAATTC  1187
      ||||||||||||||||||||||||||||||||||||||
seq2  CCTATGGTATGTGCTATGGAGACAGGAGAAATGAATTC  1154

seq1: chr6_40050713_40051525
seq2: B6Ng01-110C22.g_64_882

seq1  GAATTCCAACTGGGAGAACCGGCAAAGGCAAAGGCGTGCGTGTGTGTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAACTGGGAGAACCGGCAAAGGCAAAGGCGTGCGTGTGTGTGTG  50

seq1  TGTATGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  100

seq1  AGAGAGAGAGATGCCTAGGGTCAGTTGAAGCAGACAGGATGAGGGACGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGATGCCTAGGGTCAGTTGAAGCAGACAGGATGAGGGACGTT  150

seq1  ACTGGGCGATGACAGAAGGAATAAGATAATTTGTGTGCTTGGTTCCTGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGCGATGACAGAAGGAATAAGATAATTTGTGTGCTTGGTTCCTGGG  200

seq1  AGCAGAAAAGCTATGGAAGATATTATCCAGAAGAACAGCATGTTTAAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAAAAGCTATGGAAGATATTATCCAGAAGAACAGCATGTTTAAATA  250

seq1  GAACCCTGGCCTGGGAAGGCAAGGCAAACTTGGACGGAGGGACAGTAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCCTGGCCTGGGAAGGCAAGGCAAACTTGGACGGAGGGACAGTAGAT  300

seq1  TTTACTTTTAATTGAAGGTTTTAAAATATATTTGATAATATTTTTCTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTTTAATTGAAGGTTTTAAAATATATTTGATAATATTTTTCTTCT  350

seq1  CTTCCAATTCCTCCCAGATTCCCTCAAATTCCCTACCCACCTAACTTCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAATTCCTCCCAGATTCCCTCAAATTCCCTACCCACCTAACTTCAT  400

seq1  ACTCTCTCTTTAACAAAAGGCCAATGCCTCCAAGAAAATTAAAACAGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCTCTTTAACAAAAGGCCAATGCCTCCAAGAAAATTAAAACAGAAA  450

seq1  CCCAATAAGTAAAAAAAAAAAAATGCTAAAACAGGACAAAACTGCACAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATAAGTAAAAAAAAAAAAATGCTAAAACAGGACAAAACTGCACAGT  500

seq1  ATAAAAACATGGACTATG-TTTTGTATTGGCCAAAACTCTAGGGCCTGCT  549
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ATAAAAACATGGACTATGTTTTTGTATTGGCCAAAACTCTAGGGCCTGCT  550

seq1  TTGGAATGTGGTCGATTTACCCAGCGGCAATCCTTTGGAGAAGACTGGCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAATGTGGTCGATTTACCCAGCGGCAATCCTTTGGAGAAGACTGGCT  600

seq1  CTTTCTTTCCAGCAGGTATCCGTTAC-AAATAACTTCTTGGTTAGAGGTT  648
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CTTTCTTTCCAGCAGGTATCCGTTACAAAATAACTTCTTGGTTAGAGGTT  650

seq1  GGGCTTTGTATCTGC-TCCCTCCTCTCAGTACT-GGGATTCTGTCTGGTA  696
      ||||||||||||||| ||||||||||||||||| ||||||||||||||||
seq2  GGGCTTTGTATCTGCTTCCCTCCTCTCAGTACTGGGGATTCTGTCTGGTA  700

seq1  T-GGACCTGGATAGTTGGACTTTTGGCTACTTCATGTGTTCCCTTTTCTA  745
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACCTGGATAGTTGGACTTTTGGCTACTTCATGTGTTCCCTTTTCTA  750

seq1  CCACCCTTCTCTACTCTTCTCCCTTCCAATCCCCCAACACTA-GGTAGGA  794
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CCACCCTTCTCTACTCTTCTCCCTTCCAATCCCCCAACACTAGGGTAGGA  800

seq1  GAGAAAGAAGTTTAGAGGA  813
      |||||||||||||||||||
seq2  GAGAAAGAAGTTTAGAGGA  819