BAC Information

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BAC

Clone NameB6Ng01-110D11
Chromosome6 (Build37)
Map Location 126,131,632 - 126,132,884
singlet/doubletsinglet
Overlap geneLOC100043565
Upstream geneNcapd2, Mrpl51, Vamp1, Tapbpl, Cd27, 4930417O13Rik, Tuba3a, Ltbr, Scnn1a, Tnfrsf1a, Plekhg6, Cd9, Vwf, Tmem16b, Ntf3
Downstream geneLOC667427, LOC100043567, Kcna5, Kcna1, Kcna6, LOC667463, Ndufa9, Akap3, Dyrk4, Rad51ap1, D6Wsu163e, LOC667473, LOC624256, Fgf6, Fgf23, 9630033F20Rik, Ccnd2, Tpi-rs11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-110D11.bB6Ng01-110D11.g
ACCDH916901DH916902
length1,2411,222
definitionDH916901|Mus musculus domesticus DNA, BAC clone: B6Ng01-110D11, 5' end.DH916902|Mus musculus domesticus DNA, BAC clone: B6Ng01-110D11, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatctatttgggcttatcgtttaagaaagaatataggccatggtg
gaacagaaggcatagagacaggagcctgcagcagatggtcacagtttgtc
tccagtcaaagagaagaaaacagacaagatggaccccagcaacccaatct
caaacaaagtcttccagactagcctacttctacagtgaggctccacctac
ctcctaaagctatacatcctacaaaacaacatatgtagctggggaccagg
tgttcaaacacatgagcccagtgggggcacatttcacacgcaaaccacag
cactggggctgtggactgctatagacttgtctagtttgcactcctgtgca
cgtgttattactttgtagcagttgtacacattcagattgccaaagtaaac
acatctctgtgaaggaacttccaacggcttgtaaacatcacaagcttcct
ccgtccatggctaccaacagctcagtcgcttaccttataagaaaacaatg
ctttttatgaatttagacactagaatagtgttttcatttgggaactggtt
atttttcaaaggcctggggaaatgatgtgttttccgtccgctagtattta
tcaagcttccaccacatgccagatgcaatggccacttatgccactgaatg
tgtgctatcttaagatgaccccacctcagttctctagccaactcaggata
ggtacacgactgactcgagactttacagctatttctaagctcgttaacct
gttgcctcagtgagacagcaccctgagaaagtatggacgactaccattcc
ttcccagtcactcgcaccaggccacactgccgataagttcttgagctgga
atttgacccaatgcctgccaacctcatctcttctctttaagtctcttggc
aatctaagaaacagatatatgcttcctcagactttcgatgacaacttcct
gtcagagcctgcctccggattcttaaggaccctttgctgactaattgtga
tggatttgtggagccagagacctctgccatgagatgaacccatagtcaca
tgtctgaccagctcagggtcccagaaaatcttgctccattcagtagactt
tcagtcggtcacagcattctgaagctgcacttgttcagtctgggtcttct
acatatggctcatcccaaaggggacagttcaccagccagccagcttgtta
caccctgctggcagagcctttggaaatatatcttatatatc
gaattccacacgtgatcctaagacctctagtgagtggaacacaacttctg
ccaggagtctggttcgaacaccagatatctgggtacctgccttgcaagaa
gagagcttgcctgcagagaatactctgcccactgaaactaaggagagtgc
taccctccaggtctgctcatagaggctaacagagtcacctgaagaacaag
ctcttaacagtgacaactaaaacagctagcttcagagattaccagatggc
gaaaggcaaacgtaagaatcctactaacagaaatcaagaccactcaccat
catcagaacgcagcactcccaccccacctagtcctgggcaccccaacaca
accgaaaatctagacccagatttaaaaacatttctcatgatgatgataga
ggacatcaagaaggactttcataagtcacttaaagatttacaggagagca
ctgctaaagagttacaggctcttaaagaaaagcaggaaaacacagccaaa
caggtgatggaaatgaacaaaaccatactagaactaaaaggggaagtaga
cacaataaagaaaacccaaagcgaggcaacgctggagatagaaaccctag
gaaagagatctggaaccatagatgcgagcatcagcaacagaatacaagaa
atggaagagagaatctcaggtgcagaagattccatagagaacatcgacac
aacagtcaaagaaaatacaaaatgcaaaaaagatcctaactcaaaacatc
caggtaatccaggacacaatgagaagaccaaacctacggataataggaat
tgatgagaatgaagattttcaacttaaaaggccagctaatatcttcaaca
aaataatagaagaaaacttcccaaacataaaaaagagatgcccatgatca
tacaagaagcatacagaactccaaatagactggaccagaaaaaaattcct
cccgacacataataatcagaacacaaatgcactaaataaagatagaatat
aaaagcagtaaggagaaaggtcagttaacatataaggaggcctatcagaa
tacaccagactttcacaagactatgaagccagaagagctggacagatgtt
tacagacctagagaacacaatgccagcaagctacattgccggcaactctc
aatacctgaatggaacctagattccagacaacaagttcaaccaatattct
ttcacgaatatcagagccagta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_126131632_126132884
seq2: B6Ng01-110D11.b_48_1288 (reverse)

seq1  GATA-ATAAGATAAAATTTCCAAAGGCTTCTCTGCCAGGCAGGGGGTGTA  49
      |||| ||||||| | |||||||||||   |||||||| |||  |||||||
seq2  GATATATAAGAT-ATATTTCCAAAGG---CTCTGCCA-GCA--GGGTGTA  43

seq1  GCAGGCTGGCTGGCTGGTGAACTGTCCCCCTGGGAATGAGCCAATTGTAG  99
       || ||||||||||||||||||||||||| | || ||||||||  |||||
seq2  ACAAGCTGGCTGGCTGGTGAACTGTCCCCTTTGGGATGAGCCATATGTAG  93

seq1  AAGACCCAGACTGAAACAAGTGCAGCCTTCAG-ATGCTGTGAACGAACTG  148
      ||||||||||||| ||||||||||| |||||| ||||||||| || ||||
seq2  AAGACCCAGACTG-AACAAGTGCAG-CTTCAGAATGCTGTGACCG-ACTG  140

seq1  AAAGTCTACTGAATGGGAGC-AGA-TCTCTGGGAACCCTGAGCTGGTCAG  196
      |||||||||||||| ||||| ||| | |||||| ||||||||||||||||
seq2  AAAGTCTACTGAAT-GGAGCAAGATTTTCTGGG-ACCCTGAGCTGGTCAG  188

seq1  ACATGTTGGAACTATGGGTTCATCTCATGGCAGAGGTCTCTGGCTCCACA  246
      ||||||    ||||||||||||||||||||||||||||||||||||||||
seq2  ACATGT---GACTATGGGTTCATCTCATGGCAGAGGTCTCTGGCTCCACA  235

seq1  AATCCATCACAATTAGTCAGCAAAGGGTCCTTAAGAATCCGGAGGCAGGC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCATCACAATTAGTCAGCAAAGGGTCCTTAAGAATCCGGAGGCAGGC  285

seq1  TCTGACAGGAAGTTGTCATCGAAAGTCTGAGGAAGCATAATATCTGTTTC  346
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TCTGACAGGAAGTTGTCATCGAAAGTCTGAGGAAGCAT-ATATCTGTTTC  334

seq1  TTAGATTGCCAAGAGACTTAAAGAGAAGAGATGAGGTTGGCAGGCATTGG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATTGCCAAGAGACTTAAAGAGAAGAGATGAGGTTGGCAGGCATTGG  384

seq1  GTCAAATTCCAGCTCAAGAACTTATCGGCAGTGTGGCCTGGTGCGAGTGA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAATTCCAGCTCAAGAACTTATCGGCAGTGTGGCCTGGTGCGAGTGA  434

seq1  CTGGGAAGGAATGGTAGTCGTCCATACTTTCTCAGGGTGCTGTCTCACTG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAAGGAATGGTAGTCGTCCATACTTTCTCAGGGTGCTGTCTCACTG  484

seq1  AGGCAACAGGTTAACGAGCTTAGAAATAGCTGTAAAGTCTCGAGTCAGTC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAACAGGTTAACGAGCTTAGAAATAGCTGTAAAGTCTCGAGTCAGTC  534

seq1  GTGTACCTATCCTGAGTTGGCTAGAGAACTGAGGTGGGGTCATCTTAAGA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTACCTATCCTGAGTTGGCTAGAGAACTGAGGTGGGGTCATCTTAAGA  584

seq1  TAGCACACATTCAGTGGCATAAGTGGCCATTGCATCTGGCATGTGGTGGA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACACATTCAGTGGCATAAGTGGCCATTGCATCTGGCATGTGGTGGA  634

seq1  AGCTTGATAAATACTAGCGGACGGAAAACACATCATTTCCCCAGGCCTTT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGATAAATACTAGCGGACGGAAAACACATCATTTCCCCAGGCCTTT  684

seq1  GAAAAATAACCAGTTCCCAAATGAAAACACTATTCTAGTGTCTAAATTCA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATAACCAGTTCCCAAATGAAAACACTATTCTAGTGTCTAAATTCA  734

seq1  TAAAAAGCATTGTTTTCTTATAAGGTAAGCGACTGAGCTGTTGGTAGCCA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGCATTGTTTTCTTATAAGGTAAGCGACTGAGCTGTTGGTAGCCA  784

seq1  TGGACGGAGGAAGCTTGTGATGTTTACAAGCCGTTGGAAGTTCCTTCACA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACGGAGGAAGCTTGTGATGTTTACAAGCCGTTGGAAGTTCCTTCACA  834

seq1  GAGATGTGTTTACTTTGGCAATCTGAATGTGTACAACTGCTACAAAGTAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGTGTTTACTTTGGCAATCTGAATGTGTACAACTGCTACAAAGTAA  884

seq1  TAACACGTGCACAGGAGTGCAAACTAGACAAGTCTATAGCAGTCCACAGC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACGTGCACAGGAGTGCAAACTAGACAAGTCTATAGCAGTCCACAGC  934

seq1  CCCAGTGCTGTGGTTTGCGTGTGAAATGTGCCCCCACTGGGCTCATGTGT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTGCTGTGGTTTGCGTGTGAAATGTGCCCCCACTGGGCTCATGTGT  984

seq1  TTGAACACCTGGTCCCCAGCTACATATGTTGTTTTGTAGGATGTATAGCT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACACCTGGTCCCCAGCTACATATGTTGTTTTGTAGGATGTATAGCT  1034

seq1  TTAGGAGGTAGGTGGAGCCTCACTGTAGAAGTAGGCTAGTCTGGAAGACT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGAGGTAGGTGGAGCCTCACTGTAGAAGTAGGCTAGTCTGGAAGACT  1084

seq1  TTGTTTGAGATTGGGTTGCTGGGGTCCATCTTGTCTGTTTTCTTCTCTTT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGAGATTGGGTTGCTGGGGTCCATCTTGTCTGTTTTCTTCTCTTT  1134

seq1  GACTGGAGACAAACTGTGACCATCTGCTGCAGGCTCCTGTCTCTATGCCT  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGAGACAAACTGTGACCATCTGCTGCAGGCTCCTGTCTCTATGCCT  1184

seq1  TCTGTTCCACCATGGCCTATATTCTTTCTTAAACGATAAGCCCAAATAGA  1246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTCCACCATGGCCTATATTCTTTCTTAAACGATAAGCCCAAATAGA  1234

seq1  TGAATTC  1253
      |||||||
seq2  TGAATTC  1241