BAC Information

Click to search

BAC

Clone NameB6Ng01-110D24
Chromosome6 (Build37)
Map Location 111,903,756 - 112,064,285
singlet/doubletdoublet
Overlap genenone
Upstream geneGrm7
Downstream gene1700054K19Rik, Lmcd1, D630042P16Rik, LOC619975, Cav3, Oxtr, LOC434076, EG434077, Rad18, Srgap3, EG666387, EG620161, LOC666397, Thumpd3, EG434078, Setd5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-110D24.bB6Ng01-110D24.g
ACCDH916925DH916926
length1,1471,059
definitionDH916925|Mus musculus domesticus DNA, BAC clone: B6Ng01-110D24, 5' end.DH916926|Mus musculus domesticus DNA, BAC clone: B6Ng01-110D24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,903,756 - 111,904,932)(112,063,206 - 112,064,285)
sequence
gaattctctaatgataaaataatagtaataaaaagaacaagaataggaaa
ggttcttttggctagaaagttgtactggtacaggaaaacctcattacttt
accaggagtcgcaagccagttactttcttttttccagcataaacaatttg
ccttttatcattattgattgtctaatggagttgataaaatcatattggaa
agacaactcattctagtattgatttaattgtttcagagataatcatttgc
tacttttaggcatagtgaagattttaggtactttctcacaaataattcct
ggacacctctttgagactgtttttaaaattatcattctaatcttaaccca
gagcaagctcagggccaagtgctcacagtatctgagtgtagatctaaaga
atgcacaaacggcaagttatttttagtttgtttttcttaatggcatgttc
cattgcctatcaaatattgcttcaagcagggtaatccatccgtgcttagc
tactgaaaaacaacctttctctaaaacttgccatattaacagtgggtcct
ggggattgttcccactgaagaggctagaagactttatattttactgtctt
tcttgtcaataattattaagaagaatgagaaattgagtatcctaggcata
gcatgcatttatccatctcagggatgaatttattcatgttgtttcattgg
aattcatgcttcatcaagcactaaagaaccttctccatgcctttcatgcc
ttgacaagtctgtcagcctggctctgcccatgtacatgaagagccaaatg
tgtaaagacacaggtgagcaaaagaactcttgctttgttctgaaatgacg
gctctaatcactccaattgtgcagctgcttgtgtggcctcataaaggaat
tcagaatctcatgtcccctctggctaggagagacaaattctctcatgcta
ttttcaggcagagctacccaccagttgacatgcagttgtctttcaaatca
tagatattttcaatgacagaaaaagagccacgggcagaagcaagctcatt
ggtaagtctgctatgcagcattcagactgagtcagctccacacccatgtg
ccaagccaggcatggcagcacaattgcttgttggcttgactgatgaa
gaattcatcattgttcagacatttagctttgctctcttagaggtatagaa
gtattttattttattttctttagcaaggttcaatgtgcttgccaaaatac
aatagcgattgttagctaatcattactgtgtgtgaagcagacaaaacctc
tttaaaatgaatgtaggtttgttctgcagcgacagcaattctgactcact
gtttcctatcattttatggcagtggctgaagctaaagcttgacttaagcc
tttgttaagagctaagagaaaaccatccatatcacgagaacctctttcct
agctggcatgagtgtgagatctacaaagcttgtatgtcttgtctatgcca
tggttagttctaatccttccctaccacaagcatctagatgcaatgttgga
aagagctggctgagatcagtgtgggtttttattttgtatgttttaaagcc
aagttatcatatagaatatgctggtcttaaactcagtagctagctgaaga
caattttgaactttccatcttcctgtttcctccccccagagcgatggggt
tacagggcatgtcatcacacagtttgtgatgctagggattgaacccaggg
cttgatgcaagctaggcaagcactcttccaacttagccacacttgcagcc
atggtgtggacatttcttacgttccatgaccataaagaattttctgaaat
gtctttcattatgaagaaacttttgaagaattgttgcatagtccttaatc
caaggtagaagccacgtgatatttttttcagcttctcttgttattgagta
aagtcatgtgactcagaatatactataagatatagatacagggagaagga
ataggacaaagaagacaggagggtacagaatttcaggagtggtggtagag
catggcttttggaagatcttggaagggatttctggtgatcagagttgact
gcatctagcttctgtgtttggtgacagagcagtagactccacctacgtgg
tgcaaaattagtttggtcactcttggatacagtcctccagcacattggaa
acatcaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_111903756_111904932
seq2: B6Ng01-110D24.b_47_1193

seq1  GAATTCTCTAATGATAAAATAATAGTAATAAAAAGAACAAGAATAGGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTAATGATAAAATAATAGTAATAAAAAGAACAAGAATAGGAAA  50

seq1  GGTTCTTTTGGCTAGAAAGTTGTACTGGTACAGGAAAACCTCATTACTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTTTTGGCTAGAAAGTTGTACTGGTACAGGAAAACCTCATTACTTT  100

seq1  ACCAGGAGTCGCAAGCCAGTTACTTTCTTTTTTCCAGCATAAACAATTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGAGTCGCAAGCCAGTTACTTTCTTTTTTCCAGCATAAACAATTTG  150

seq1  CCTTTTATCATTATTGATTGTCTAATGGAGTTGATAAAATCATATTGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTATCATTATTGATTGTCTAATGGAGTTGATAAAATCATATTGGAA  200

seq1  AGACAACTCATTCTAGTATTGATTTAATTGTTTCAGAGATAATCATTTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAACTCATTCTAGTATTGATTTAATTGTTTCAGAGATAATCATTTGC  250

seq1  TACTTTTAGGCATAGTGAAGATTTTAGGTACTTTCTCACAAATAATTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTAGGCATAGTGAAGATTTTAGGTACTTTCTCACAAATAATTCCT  300

seq1  GGACACCTCTTTGAGACTGTTTTTAAAATTATCATTCTAATCTTAACCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACCTCTTTGAGACTGTTTTTAAAATTATCATTCTAATCTTAACCCA  350

seq1  GAGCAAGCTCAGGGCCAAGTGCTCACAGTATCTGAGTGTAGATCTAAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAAGCTCAGGGCCAAGTGCTCACAGTATCTGAGTGTAGATCTAAAGA  400

seq1  ATGCACAAACGGCAAGTTATTTTTAGTTTGTTTTTCTTAATGGCATGTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACAAACGGCAAGTTATTTTTAGTTTGTTTTTCTTAATGGCATGTTC  450

seq1  CATTGCCTATCAAATATTGCTTCAAGCAGGGTAATCCATCCGTGCTTAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCCTATCAAATATTGCTTCAAGCAGGGTAATCCATCCGTGCTTAGC  500

seq1  TACTGAAAAACAACCTTTCTCTAAAACTTGCCATATTAACAGTGGGTCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAAAAACAACCTTTCTCTAAAACTTGCCATATTAACAGTGGGTCCT  550

seq1  GGGGATTGTTCCCACTGAAGAGGCTAGAAGACTTTATATTTTACTGTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGATTGTTCCCACTGAAGAGGCTAGAAGACTTTATATTTTACTGTCTT  600

seq1  TCTTGTCAATAATTATTAAGAAGAATGAGAAATTGAGTATCCTAGGCATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTCAATAATTATTAAGAAGAATGAGAAATTGAGTATCCTAGGCATA  650

seq1  GCATGCATTTATCCATCTCAGGGATGAATTTATTCATGTTGTTTCATTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCATTTATCCATCTCAGGGATGAATTTATTCATGTTGTTTCATTGG  700

seq1  AATTCATGCTTCATCAAGCACTAAAGAACCTTCTCCATGCCTTTCATGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCATGCTTCATCAAGCACTAAAGAACCTTCTCCATGCCTTTCATGCC  750

seq1  TTGACAAGTCTGTCAGCCTGGCTCTGCCCATGTACATGAAGAGCCAAATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACAAGTCTGTCAGCCTGGCTCTGCCCATGTACATGAAGAGCCAAATG  800

seq1  TGTAAAGACACAGGTGAGCAAAAAGAACTCTTGC-TTGTTCTGAAATGAC  849
      ||||||||||||||||||| |||||||||||||| |||||||||||||||
seq2  TGTAAAGACACAGGTGAGC-AAAAGAACTCTTGCTTTGTTCTGAAATGAC  849

seq1  GGCTCTAATCACTCCAATTGTGCAGCTGCTTGTGTGGCCTCATAAAGGAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTAATCACTCCAATTGTGCAGCTGCTTGTGTGGCCTCATAAAGGAA  899

seq1  TTCAGAATCTCATGTCCACTCTGGCTAGGAGAAGAACAAATTCTTCCTCC  949
      ||||||||||||||||| ||||||||||||||   |||||||||  || |
seq2  TTCAGAATCTCATGTCCCCTCTGGCTAGGAGA--GACAAATTCT--CT-C  944

seq1  ATGCTATGTCAAGCCAGAGCTACCCACCAAGTTGACATGCAGTTTGTCTT  999
      ||||||| |  || |||||||||||||| ||||||||||||| ||||| |
seq2  ATGCTATTTTCAGGCAGAGCTACCCACC-AGTTGACATGCAG-TTGTC-T  991

seq1  TTCAAATCCATAGGATATTTTTCAAATGAACCAAGAAAAAGAGGCCACGG  1049
      ||||||| |||| ||||||||   |||||    ||||||||| |||||||
seq2  TTCAAAT-CATA-GATATTTT--CAATGA---CAGAAAAAGA-GCCACGG  1033

seq1  GCAGAAAGCATAGCTCAGTGGGTAAAGTGCTTGCTATGCAAGCATTCAAG  1099
      |||| ||||| |||||| | |||||   |  |||||||| ||||||| ||
seq2  GCAG-AAGCA-AGCTCA-TTGGTAA---GTCTGCTATGC-AGCATTC-AG  1075

seq1  ACCTGGAGTTCAAGCTCCAACACTCATGTGCAAAGCCAGGCATGGCAGCA  1149
      ||   ||||   |||||| |||| ||||||| ||||||||||||||||||
seq2  AC--TGAGT--CAGCTCC-ACACCCATGTGCCAAGCCAGGCATGGCAGCA  1120

seq1  CA--TGCTTGTTGTGCTGTGACTGAGTGAA  1177
      ||  ||||||||| ||| ||||||| ||||
seq2  CAATTGCTTGTTG-GCT-TGACTGA-TGAA  1147

seq1: chr6_112063206_112064285
seq2: B6Ng01-110D24.g_66_1124 (reverse)

seq1  CCTTGATGTCTCCAATGTGGCTGAAGGACTGTGTACCAAAGAGTGACCCA  50
      ||||||||| |||||||| |||| |||||  |||| | ||||||||||  
seq2  CCTTGATGTTTCCAATGT-GCTGGAGGAC--TGTATCCAAGAGTGACC--  45

seq1  AAACTACATTTTGCCACCACCGTAGTGGGAGTCCTACTGCTCCTGGTCA-  99
      |||||| |||||| ||||| |||||  ||||| |||||||||   |||| 
seq2  AAACTA-ATTTTG-CACCA-CGTAGGTGGAGT-CTACTGCTC--TGTCAC  89

seq1  CAAACACAGAAGCTTAGATGCCAGTCAAACTCTGATCACCAGAAATCCCC  149
      ||||||||||||| |||||| ||||| ||||||||||||||||||| |||
seq2  CAAACACAGAAGC-TAGATG-CAGTC-AACTCTGATCACCAGAAAT-CCC  135

seq1  TTCCCAAAGGTTCTTCCCAAAAGCCCAATGCCTCTACCACCACTCCTGAA  199
      ||||   | | |||| |||||||||  ||| |||||||||||||||||||
seq2  TTCC---AAGATCTT-CCAAAAGCC--ATG-CTCTACCACCACTCCTGAA  178

seq1  ATTCTGTACCCTCCTGTCTTCTTTGTCCTATTCCTTCT-CCTGTATCTAT  248
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ATTCTGTACCCTCCTGTCTTCTTTGTCCTATTCCTTCTCCCTGTATCTAT  228

seq1  ATCTTATTAGTATATTCTGAGTCACATGACTTTACTCAATAACAAGGGAA  298
      |||||| ||||||||||||||||||||||||||||||||||||||| |||
seq2  ATCTTA-TAGTATATTCTGAGTCACATGACTTTACTCAATAACAAGAGAA  277

seq1  GCTGAAAAAAATATCACGTGGCTTCTACCTTGGATTAAGGACTATGCAAC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAAAAAATATCACGTGGCTTCTACCTTGGATTAAGGACTATGCAAC  327

seq1  AATTCTTCAAAAGTTTCTTCATAATGAAAGACATTTCAGAAAATTCTTTA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTCAAAAGTTTCTTCATAATGAAAGACATTTCAGAAAATTCTTTA  377

seq1  TGGTCATGGAACGTAAGAAATGTCCACACCATGGCTGCAAGTGTGGCTAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCATGGAACGTAAGAAATGTCCACACCATGGCTGCAAGTGTGGCTAA  427

seq1  GTTGGAAGAGTGCTTGCCTAGCTTGCATCAAGCCCTGGGTTCAATCCCTA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGAAGAGTGCTTGCCTAGCTTGCATCAAGCCCTGGGTTCAATCCCTA  477

seq1  GCATCACAAACTGTGTGATGACATGCCCTGTAACCCCATCGCTCTGGGGG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCACAAACTGTGTGATGACATGCCCTGTAACCCCATCGCTCTGGGGG  527

seq1  GAGGAAACAGGAAGATGGAAAGTTCAAAATTGTCTTCAGCTAGCTACTGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAACAGGAAGATGGAAAGTTCAAAATTGTCTTCAGCTAGCTACTGA  577

seq1  GTTTAAGACCAGCATATTCTATATGATAACTTGGCTTTAAAACATACAAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAGACCAGCATATTCTATATGATAACTTGGCTTTAAAACATACAAA  627

seq1  ATAAAAACCCACACTGATCTCAGCCAGCTCTTTCCAACATTGCATCTAGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAACCCACACTGATCTCAGCCAGCTCTTTCCAACATTGCATCTAGA  677

seq1  TGCTTGTGGTAGGGAAGGATTAGAACTAACCATGGCATAGACAAGACATA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGTGGTAGGGAAGGATTAGAACTAACCATGGCATAGACAAGACATA  727

seq1  CAAGCTTTGTAGATCTCACACTCATGCCAGCTAGGAAAGAGGTTCTCGTG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTTTGTAGATCTCACACTCATGCCAGCTAGGAAAGAGGTTCTCGTG  777

seq1  ATATGGATGGTTTTCTCTTAGCTCTTAACAAAGGCTTAAGTCAAGCTTTA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGATGGTTTTCTCTTAGCTCTTAACAAAGGCTTAAGTCAAGCTTTA  827

seq1  GCTTCAGCCACTGCCATAAAATGATAGGAAACAGTGAGTCAGAATTGCTG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCAGCCACTGCCATAAAATGATAGGAAACAGTGAGTCAGAATTGCTG  877

seq1  TCGCTGCAGAACAAACCTACATTCATTTTAAAGAGGTTTTGTCTGCTTCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCTGCAGAACAAACCTACATTCATTTTAAAGAGGTTTTGTCTGCTTCA  927

seq1  CACACAGTAATGATTAGCTAACAATCGCTATTGTATTTTGGCAAGCACAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGTAATGATTAGCTAACAATCGCTATTGTATTTTGGCAAGCACAT  977

seq1  TGAACCTTGCTAAAGAAAATAAAATAAAATACTTCTATACCTCTAAGAGA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCTTGCTAAAGAAAATAAAATAAAATACTTCTATACCTCTAAGAGA  1027

seq1  GCAAAGCTAAATGTCTGAACAATGATGAATTC  1080
      ||||||||||||||||||||||||||||||||
seq2  GCAAAGCTAAATGTCTGAACAATGATGAATTC  1059