BAC Information

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BAC

Clone NameB6Ng01-110F22
Chromosome6 (Build37)
Map Location 93,015,728 - 93,135,088
singlet/doubletdoublet
Overlap geneLOC384461
Upstream geneFgd5, Nr2c2, Mrps25, Zfyve20, Trh, LOC665805, Prickle2, LOC545866, A730049H05Rik
Downstream geneLOC100043253, LOC665831, Magi1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-110F22.bB6Ng01-110F22.g
ACCDH917009DH917010
length1,0271,118
definitionDH917009|Mus musculus domesticus DNA, BAC clone: B6Ng01-110F22, 5' end.DH917010|Mus musculus domesticus DNA, BAC clone: B6Ng01-110F22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,015,728 - 93,016,937)(93,133,953 - 93,135,088)
sequence
gaattcaaggtgcagtttgccttttttttttctctttacttaaagcaaga
aaagcttagcagtgaaactcattttccatgactcccaaatggtttcacaa
taaatctgtgaacttaatcagcttcttctgttgaggaaacctcctctaat
tgtgttcttgtgtgaaatagacacgatgacaaaaaatactccaactctca
aagaaagtgtggatcactgtaatctggggaataacagtctcagtgtccag
tgaagaggagccaagatcgtgctgtctctggtagtatttcttttctagat
aattgtcaggctcttctttcttggtcaacagtatgacaacgaatatcctg
aattaagtgtctctgggacataatggtgtagtaactaggagcactgccaa
ctagatttctagaaattcccacaagactcctgcagagccacaaggcacta
taacagcaaatgaacacagagatgaaacacagaacctgaacgccttgctt
tcatctcttttcctggtctctagaagccaatgcctgtctttctttccctt
tcctccatgccaagtatggcgggtgcagaggggacatgcccggaatgtta
gcacagctgattactgtcagctagcaaagcaatctggtggaaagaagaca
acaaggactccgtgcgcttgcttcttcctgttcctcggttcttgggcagt
gaccttcagagctgccggggtttgtgggagccggtgggtgtggtctgaga
gggagagtctacaattggaagctgacctttcggagtctagatttttttcc
gtcctggaaaataagaactaagcatagaaattgaattagaagtggaagga
tttcccaaggctctcatttgtcccagctgcatccaccagagcccactttt
gccttgctcctctcattcccagctaggattcctgcctgtccttcttactc
gggctgggtgctgagtcagcagaagcactttgagacaaacacacaaacta
agctgtcgtcagcagactcagcctcaa
gaattcctaatgcctctgttgccaacctttgggactaagagaaaataaaa
agggctggaaggtccctatggggttgactgctgatgtaagagatcttgct
cttcaaagccagaatacagcttacaaagtttgcagagctagtaggtgacc
ccaccccccagctaaagagtgtctattcattagcataatacaaagctcag
gggataaaaatctgggactggtctagagttgtcaggccctaattatctaa
ctttttttcccatctagaagccattctttagcttgttggtggaaaaagct
gttttagttatctgcctccccaccccacctcccaactatgtgcattgaat
gttaaaaataataaccttagctcatatttatttaacagcttataatgttc
ctgggactatactgggtgttctttcattcatactgtcaggaagtcctggt
ctgtaggcattaataattcccttttctagtataggaagaaaagctcagag
caatgaagagacaacttcatagtccatcagctacacagcaatagggtctc
atctgagtatggctctaacaagctgcctcactgagccctcaaacagtggg
ttggtttctctgctattgcagtcctcagtaccccctggggaccccaaaca
gcctagcagaaacaggatagatatctgcaggttagggtctgccagaatta
agtccccacgttgcccctgagatctatacacacacatgtcatatgccgga
gtatactttgagtcaggtatgctgcttcagagaggtgagtgaggagagct
gcttctgcccatctttgggtaaatggtctcattctatcgctagaaagttt
cgtttgatgaggacaaaggccgggtccggttaagtcacaattcagatgtg
tggagactcacctgaggacagtgcaatgcccatacactctgatcttctgc
taagctcatgctttgagagtctgcaaatggtctctttacttcgagcttgt
ggagtcaaggcacaaactgacactcacctaacattcatgatttagatgat
gctattcatctcacacttgcctctacccccatgcatagcaaaataaaaat
atttggctcttaaatcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_93015728_93016937
seq2: B6Ng01-110F22.b_46_1072

seq1  GAATTCAAGGTGCAGTTTGCCTTTTTTTTTTCTCTTTACTTAAAGCAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGTGCAGTTTGCCTTTTTTTTTTCTCTTTACTTAAAGCAAGA  50

seq1  AAAGCTTAGCAGTGAAACTCATTTTCCATGACTCCCAAATGGTTTCACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTTAGCAGTGAAACTCATTTTCCATGACTCCCAAATGGTTTCACAA  100

seq1  TAAATCTGTGAACTTAATCAGCTTCTTCTGTTGAGGAAACCTCCTCTAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCTGTGAACTTAATCAGCTTCTTCTGTTGAGGAAACCTCCTCTAAT  150

seq1  TGTGTTCTTGTGTGAAATAGACACGATGACAAAAAATACTCCAACTCTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTCTTGTGTGAAATAGACACGATGACAAAAAATACTCCAACTCTCA  200

seq1  AAGAAAGTGTGGATCACTGTAATCTGGGGAATAACAGTCTCAGTGTCCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGTGTGGATCACTGTAATCTGGGGAATAACAGTCTCAGTGTCCAG  250

seq1  TGAAGAGGAGCCAAGATCGTGCTGTCTCTGGTAGTATTTCTTTTCTAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAGGAGCCAAGATCGTGCTGTCTCTGGTAGTATTTCTTTTCTAGAT  300

seq1  AATTGTCAGGCTCTTCTTTCTTGGTCAACAGTATGACAACGAATATCCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTCAGGCTCTTCTTTCTTGGTCAACAGTATGACAACGAATATCCTG  350

seq1  AATTAAGTGTCTCTGGGACATAATGGTGTAGTAACTAGGAGCACTGCCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAGTGTCTCTGGGACATAATGGTGTAGTAACTAGGAGCACTGCCAA  400

seq1  CTAGATTTCTAGAAATTCCCACAAGACTCCTGCAGAGCCACAAGGCACTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATTTCTAGAAATTCCCACAAGACTCCTGCAGAGCCACAAGGCACTA  450

seq1  TAACAGCAAATGAACACAGAGATGAAACACAGAACCTGAACGCCTTGCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGCAAATGAACACAGAGATGAAACACAGAACCTGAACGCCTTGCTT  500

seq1  TCATCTCTTTTCCTGGTCTCTAGAAGCCAATGCCTGTCTTTCTTTCCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTCTTTTCCTGGTCTCTAGAAGCCAATGCCTGTCTTTCTTTCCCTT  550

seq1  TCCTCCATGCCAAGTATGGCGGGTGCAGAGGGGACATGCCCGGAATGTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCATGCCAAGTATGGCGGGTGCAGAGGGGACATGCCCGGAATGTTA  600

seq1  GCACAGCTGATTACTGTCAGCTAGCAAAGCAATCTGGTGGAAAGAAGACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGCTGATTACTGTCAGCTAGCAAAGCAATCTGGTGGAAAGAAGACA  650

seq1  ACAAGGACTCCGTGCGCTTGCTTCTTCCTGTTCCTCGGTTCTTGGGCAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGACTCCGTGCGCTTGCTTCTTCCTGTTCCTCGGTTCTTGGGCAGT  700

seq1  GACCTTCAGAGCTGCCGGGGTTTGTGGGAGCCGGTGGGTGTGGTCTGAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTCAGAGCTGCCGGGGTTTGTGGGAGCCGGTGGGTGTGGTCTGAGA  750

seq1  GGGAGAGTCTACAATTGGAAGCTGACCTTTCGGAGTCTAGATTTTTTTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAGTCTACAATTGGAAGCTGACCTTTCGGAGTCTAGATTTTTTTCC  800

seq1  GTCCTGGAAAATAAGAACTAAGCATAGAAATTGAATTAGAAGTGGAAGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGGAAAATAAGAACTAAGCATAGAAATTGAATTAGAAGTGGAAGGA  850

seq1  TTTCCCAAGGCTCTCATTTGTCCCAGCTGCATCCA-CAGAGCCCACTTTT  899
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TTTCCCAAGGCTCTCATTTGTCCCAGCTGCATCCACCAGAGCCCACTTTT  900

seq1  GCCTTGCTCCTCTCATTCCCAGCTAGGATTCCTGCCTGTCCCTCCTTACT  949
      ||||||||||||||||||||||||||||||||||||||| ||| ||||||
seq2  GCCTTGCTCCTCTCATTCCCAGCTAGGATTCCTGCCTGT-CCTTCTTACT  949

seq1  CCGGGCTGGGTGCTGAGGTCAGCAGAAGCACCTTTGAGACAAACACACAA  999
       ||||||||||||||| ||||||||||||| |||||||||||||||||||
seq2  -CGGGCTGGGTGCTGA-GTCAGCAGAAGCA-CTTTGAGACAAACACACAA  996

seq1  ACTAAGCTGTCGTCAGCAGACCCAGCCTCAAAATTGGAGGAGGAATTGTG  1049
      ||||||||||||||||||||| |||||||||                   
seq2  ACTAAGCTGTCGTCAGCAGACTCAGCCTCAA-------------------  1027

seq1  AAAACATCGTTTCCCTGCAAATCGGACACCCTCCTCACTCCCACAACAAA  1099
                                                        
seq2  --------------------------------------------------  1027

seq1  AGAACTAGTGTTTCTAAATGCTCTTGCCGCAGGCCCTCACCCGCCTGTGA  1149
                                                        
seq2  --------------------------------------------------  1027

seq1  ATAGGGGCACGGAGGGGACAGAAACACCATAAAATCCTAGGTTCTCTCCA  1199
                                                        
seq2  --------------------------------------------------  1027

seq1  CTCAGCCTCAA  1210
                 
seq2  -----------  1027

seq1: chr6_93133953_93135088
seq2: B6Ng01-110F22.g_64_1181 (reverse)

seq1  CTGATTTAAGAAGCAAATATATTTTTATATTTGCTATGGCATGGGGGTAG  50
      |||||||||||  |||  |||||||||| |||||||| ||||||||||||
seq2  CTGATTTAAGAGCCAA--ATATTTTTAT-TTTGCTAT-GCATGGGGGTAG  46

seq1  AGGCAGGTG-GAGATGAAAATTAGCATCTATCTAAATTAATGAATGTTAG  99
      ||||| ||| ||||||||   ||||||| ||||||| | |||||||||||
seq2  AGGCAAGTGTGAGATGAA---TAGCATC-ATCTAAA-TCATGAATGTTAG  91

seq1  TTGAGTGTCAGTTTTGTGCCTTGAACTCCACAAAGCTCGAAGTAAAGAGA  149
       |||||||||| ||||||||||| ||||||| ||||||||||||||||||
seq2  GTGAGTGTCAG-TTTGTGCCTTG-ACTCCAC-AAGCTCGAAGTAAAGAGA  138

seq1  CCATTTGCAGACTCTCAAAGCCATGGAGGCTTAGCAGAAGATCAGAGTGT  199
      |||||||||||||||||||| ||||   ||||||||||||||||||||||
seq2  CCATTTGCAGACTCTCAAAG-CATG--AGCTTAGCAGAAGATCAGAGTGT  185

seq1  ATGGGCATTGCACCTGTTCCTCAGGTGGAGTCTCCACACATCTGAATTGT  249
      |||||||||||| ||| ||||||||| |||||||||||||||||||||||
seq2  ATGGGCATTGCA-CTG-TCCTCAGGT-GAGTCTCCACACATCTGAATTGT  232

seq1  GACTTAACCGGACCCGGCCTTTGTCCTCATCAAACGAAACTTTCTTAGCG  299
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GACTTAACCGGACCCGGCCTTTGTCCTCATCAAACGAAACTTTC-TAGCG  281

seq1  ATAGAATGAGACCATTTACCCAAAGATGGGCAGAAGCAGCTCTCCTCACT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAATGAGACCATTTACCCAAAGATGGGCAGAAGCAGCTCTCCTCACT  331

seq1  CACCTCTCTGAAGCAGCATACCTGACTCAAAGTATACTCCGGCATATGAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCTCTGAAGCAGCATACCTGACTCAAAGTATACTCCGGCATATGAC  381

seq1  ATGTGTGTGTATAGATCTCAGGGGCAACGTGGGGACTTAATTCTGGCAGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGTGTATAGATCTCAGGGGCAACGTGGGGACTTAATTCTGGCAGA  431

seq1  CCCTAACCTGCAGATATCTATCCTGTTTCTGCTAGGCTGTTTGGGGTCCC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAACCTGCAGATATCTATCCTGTTTCTGCTAGGCTGTTTGGGGTCCC  481

seq1  CAGGGGGTACTGAGGACTGCAATAGCAGAGAAACCAACCCACTGTTTGAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGGTACTGAGGACTGCAATAGCAGAGAAACCAACCCACTGTTTGAG  531

seq1  GGCTCAGTGAGGCAGCTTGTTAGAGCCATACTCAGATGAGACCCTATTGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCAGTGAGGCAGCTTGTTAGAGCCATACTCAGATGAGACCCTATTGC  581

seq1  TGTGTAGCTGATGGACTATGAAGTTGTCTCTTCATTGCTCTGAGCTTTTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAGCTGATGGACTATGAAGTTGTCTCTTCATTGCTCTGAGCTTTTC  631

seq1  TTCCTATACTAGAAAAGGGAATTATTAATGCCTACAGACCAGGACTTCCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTATACTAGAAAAGGGAATTATTAATGCCTACAGACCAGGACTTCCT  681

seq1  GACAGTATGAATGAAAGAACACCCAGTATAGTCCCAGGAACATTATAAGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTATGAATGAAAGAACACCCAGTATAGTCCCAGGAACATTATAAGC  731

seq1  TGTTAAATAAATATGAGCTAAGGTTATTATTTTTAACATTCAATGCACAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAATAAATATGAGCTAAGGTTATTATTTTTAACATTCAATGCACAT  781

seq1  AGTTGGGAGGTGGGGTGGGGAGGCAGATAACTAAAACAGCTTTTTCCACC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGGAGGTGGGGTGGGGAGGCAGATAACTAAAACAGCTTTTTCCACC  831

seq1  AACAAGCTAAAGAATGGCTTCTAGATGGGAAAAAAAGTTAGATAATTAGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGCTAAAGAATGGCTTCTAGATGGGAAAAAAAGTTAGATAATTAGG  881

seq1  GCCTGACAACTCTAGACCAGTCCCAGATTTTTATCCCCTGAGCTTTGTAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGACAACTCTAGACCAGTCCCAGATTTTTATCCCCTGAGCTTTGTAT  931

seq1  TATGCTAATGAATAGACACTCTTTAGCTGGGGGGTGGGGTCACCTACTAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTAATGAATAGACACTCTTTAGCTGGGGGGTGGGGTCACCTACTAG  981

seq1  CTCTGCAAACTTTGTAAGCTGTATTCTGGCTTTGAAGAGCAAGATCTCTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCAAACTTTGTAAGCTGTATTCTGGCTTTGAAGAGCAAGATCTCTT  1031

seq1  ACATCAGCAGTCAACCCCATAGGGACCTTCCAGCCCTTTTTATTTTCTCT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAGCAGTCAACCCCATAGGGACCTTCCAGCCCTTTTTATTTTCTCT  1081

seq1  TAGTCCCAAAGGTTGGCAACAGAGGCATTAGGAATTC  1136
      |||||||||||||||||||||||||||||||||||||
seq2  TAGTCCCAAAGGTTGGCAACAGAGGCATTAGGAATTC  1118