BAC Information

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BAC

Clone NameB6Ng01-110J07
Chromosome6 (Build37)
Map Location 35,287,157 - 35,473,143
singlet/doubletdoublet
Overlap geneMtpn
Upstream geneAkr1b8, LOC664942, 2310005E10Rik, Akr1b7, Bpgm, LOC100039184, Cald1, Agbl3, Tmem140, 3110062M04Rik, 9530020G05Rik, Stra8, 2010107G12Rik, Cnot4, Nup205, 1810058I24Rik, Slc13a4, BC064033, 1700065J11Rik
Downstream geneLOC100039312, LOC100039327, 9330158H04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-110J07.bB6Ng01-110J07.g
ACCDH917161DH917162
length1,1251,132
definitionDH917161|Mus musculus domesticus DNA, BAC clone: B6Ng01-110J07, 5' end.DH917162|Mus musculus domesticus DNA, BAC clone: B6Ng01-110J07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,471,997 - 35,473,143)(35,287,157 - 35,288,308)
sequence
gaattctttataagtatcatttctgataatgatacatgtcataaaaaata
caaaatctcagtacttaaacttacagtctttggttacatattggcagtat
gctgactgaactcattagaagtaatggaacacagtgttataattcattgc
atttagcattatgtattgttttcagcttatctattcataaattgagtgcc
atatgttattgtgacttctttatgttttcatttcactttgcaaaaaatgc
agggttttttttgaaactctttaaagtttaaagaagttaaaaatatatca
gatgcctcagcgttttcctataggtataaatgtcatttttgtttaaaggg
agaagatgtcaaccggacactagagggtggaaggaagcctcttcattatg
ctgcagattgtggacagcttgaaatcctggaatttctgctgctgaaagga
gcagatattaatgtatgtaccaaatgtatattatgtttactgtatataat
gtatgccactctagaaaaattttgttatatgctctaggaaattgtttgct
gtaggtctgtgaaatagttacttttaataatatagtcctacacttttttt
aagctaatgaactatttgctgccttccccttagctgttgcttttcatgtt
ctaaaccttgccaagttgacactgtaggtagtagatgctatcatgtacta
aatcatagaaccctgaagtgataagctacactagcctgcactatggggca
agtgtgaggaattcatgaggcaggagctgtcatctcctgccttgaacact
ctgtaatttaaggatttatgacattgttttggtgatcatgatagtcaaag
agatgacttttcaccacatcacgtgattgggcctaatttggcattcttct
cttcctcctcattggcattttgaccctcttcttcttctctgatcacaatg
gcatttctacagtagtggaaaagatagttcagagaaactacttgtacatc
agtggcagataaaagattgagcttagtcagatttctactcatctgactct
ggaaatacatgctttgtacttggcttctgatcattttttagaccggaact
ttttttagtagtaaattattctctt
gaattctaccaagcactaccatgcagcaagggaccacataaagccctcct
gtctggtcctccttgtgttagaagcttgcttcttagtcttcagttgaaat
gtcacttttagggataagacctgttacttactctgctggctagttttatg
tcaacatgacaaaagctatactcatctgagaagagggaacctccactgga
aaaaaaatgcctccctaagatcaagttataggcaagcctgtagggcattt
tcctaattagtgattgatgggtcagggcccagtccattgtgagtggagcc
atcctggggctggtagtcgtgggttctaaagcagactgagcaagccatga
ggagcaagccagtaagtggcatccctccatggcctctggatcagctcctg
acaccaggttcctgccctgtttccattcctatcttgatttcctccaatga
tgaacagtgatgtggtagcataggccaaataaactcttccctccctaagt
tgctttggtcatggtgtttcatcacagcaatggtcattaattgtgactaa
gacacttttgattggctgctttgagagaaaagagaggcagagcgtttggg
gtggaactctgatgaggatgtcggacttctaggaccagtcttctggctgg
ggagaggtgagctgtcggaggtgtgaagtctttcaggtaccgtgaggaag
tggtaaatgtgcctggtaacgctaagggagagaaactggggcaggagcct
gtgagacggagcagaaggacttcagcccttagccctaacactcctgtgag
tgtctgcaagcagaggacttgagagcaaggggctttaggaatcatggagc
tcagagaggtaggtgtttcccacctcctttccgggatgcaatggaagctt
ttctctcagttcccgtggtggaaatggcttgttcattctgagaacactaa
cacatttatttgtttttcatttgttcagggcaaacaggtcggagcagttc
atgtgatccagtgccggttatctctgctacttaatgcttactcaaccact
ttgcctgacctttcgggtggcaccccttccaaatttcttttcaaaccaga
attctgcaggcttcctgcggtgtcacgccagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_35471997_35473143
seq2: B6Ng01-110J07.b_49_1173 (reverse)

seq1  AAGAGATAATTTTACCTACTTAAAAAAAAGTTTCTGGCTCCTTAAAAATG  50
      ||||||  | |||| |||||  |||||||||| | |    || |||||||
seq2  AAGAGAATAATTTA-CTACT--AAAAAAAGTTCCGG---TCTAAAAAATG  44

seq1  ATCAAGAAGCCAAAGTACAAAAGCAATGTATTTTCCCAGGAGTCAGGATG  100
      ||| ||||||| |||||| ||||| ||||||||  ||| |||||| ||| 
seq2  ATC-AGAAGCC-AAGTAC-AAAGC-ATGTATTT--CCA-GAGTCA-GAT-  85

seq1  GAGTAGAAATCTGACCTAAGCTCAAATCTTTTATCTGCCACTGATGTAAC  150
      |||||||||||||| |||||||| ||||||||||||||||||||||| ||
seq2  GAGTAGAAATCTGA-CTAAGCTC-AATCTTTTATCTGCCACTGATGT-AC  132

seq1  AAGTTAGTTTCTCTGAACCTATCTTTTCCACTACTGTAGAAATGCCATTG  200
      ||| ||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AAG-TAGTTTCTCTGAA-CTATCTTTTCCACTACTGTAGAAATGCCATTG  180

seq1  TGATTCAGAGAAGAAGAAGAGGGGTCAAAATGCCAATGAGGAGGAAGAGA  250
      ||| |||||||||||||||| |||||||||||||||||||||||||||||
seq2  TGA-TCAGAGAAGAAGAAGA-GGGTCAAAATGCCAATGAGGAGGAAGAGA  228

seq1  AGAATGCCAAATTAGGCCCAATCACCTGATGTGGTGAAAAGTCATCTCTT  300
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AGAATGCCAAATTAGGCCCAATCACGTGATGTGGTGAAAAGTCATCTCTT  278

seq1  TGACTATCATGATCACCAAAACAATGTCATAAATCCTTAAATTACAGAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTATCATGATCACCAAAACAATGTCATAAATCCTTAAATTACAGAGT  328

seq1  GTTCAAGGCAGGAGATGACAGCTCCTGCCTCATGAATTCCTCACACTTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAAGGCAGGAGATGACAGCTCCTGCCTCATGAATTCCTCACACTTGC  378

seq1  CCCATAGTGCAGGCTAGTGTAGCTTATCACTTCAGGGTTCTATGATTTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATAGTGCAGGCTAGTGTAGCTTATCACTTCAGGGTTCTATGATTTAG  428

seq1  TACATGATAGCATCTACTACCTACAGTGTCAACTTGGCAAGGTTTAGAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGATAGCATCTACTACCTACAGTGTCAACTTGGCAAGGTTTAGAAC  478

seq1  ATGAAAAGCAACAGCTAAGGGGAAGGCAGCAAATAGTTCATTAGCTTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAAGCAACAGCTAAGGGGAAGGCAGCAAATAGTTCATTAGCTTAAA  528

seq1  AAAAGTGTAGGACTATATTATTAAAAGTAACTATTTCACAGACCTACAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTGTAGGACTATATTATTAAAAGTAACTATTTCACAGACCTACAGC  578

seq1  AAACAATTTCCTAGAGCATATAACAAAATTTTTCTAGAGTGGCATACATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAATTTCCTAGAGCATATAACAAAATTTTTCTAGAGTGGCATACATT  628

seq1  ATATACAGTAAACATAATATACATTTGGTACATACATTAATATCTGCTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACAGTAAACATAATATACATTTGGTACATACATTAATATCTGCTCC  678

seq1  TTTCAGCAGCAGAAATTCCAGGATTTCAAGCTGTCCACAATCTGCAGCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGCAGCAGAAATTCCAGGATTTCAAGCTGTCCACAATCTGCAGCAT  728

seq1  AATGAAGAGGCTTCCTTCCACCCTCTAGTGTCCGGTTGACATCTTCTCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAGAGGCTTCCTTCCACCCTCTAGTGTCCGGTTGACATCTTCTCCC  778

seq1  TTTAAACAAAAATGACATTTATACCTATAGGAAAACGCTGAGGCATCTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAACAAAAATGACATTTATACCTATAGGAAAACGCTGAGGCATCTGA  828

seq1  TATATTTTTAACTTCTTTAAACTTTAAAGAGTTTCAAAAAAAACCCTGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTTTAACTTCTTTAAACTTTAAAGAGTTTCAAAAAAAACCCTGCA  878

seq1  TTTTTTGCAAAGTGAAATGAAAACATAAAGAAGTCACAATAACATATGGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGCAAAGTGAAATGAAAACATAAAGAAGTCACAATAACATATGGC  928

seq1  ACTCAATTTATGAATAGATAAGCTGAAAACAATACATAATGCTAAATGCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAATTTATGAATAGATAAGCTGAAAACAATACATAATGCTAAATGCA  978

seq1  ATGAATTATAACACTGTGTTCCATTACTTCTAATGAGTTCAGTCAGCATA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATTATAACACTGTGTTCCATTACTTCTAATGAGTTCAGTCAGCATA  1028

seq1  CTGCCAATATGTAACCAAAGACTGTAAGTTTAAGTACTGAGATTTTGTAT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAATATGTAACCAAAGACTGTAAGTTTAAGTACTGAGATTTTGTAT  1078

seq1  TTTTTATGACATGTATCATTATCAGAAATGATACTTATAAAGAATTC  1147
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATGACATGTATCATTATCAGAAATGATACTTATAAAGAATTC  1125

seq1: chr6_35287157_35288308
seq2: B6Ng01-110J07.g_67_1198

seq1  GAATTCTACCAAGCACTACCATGCAGCAAGGGACCACATAAAGCCCTCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACCAAGCACTACCATGCAGCAAGGGACCACATAAAGCCCTCCT  50

seq1  GTCTGGTCCTCCTTGTGTTAGAAGCTTGCTTCTTAGTCTTCAGTTGAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGTCCTCCTTGTGTTAGAAGCTTGCTTCTTAGTCTTCAGTTGAAAT  100

seq1  GTCACTTTTAGGGATAAGACCTGTTACTTACTCTGCTGGCTAGTTTTATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTTTTAGGGATAAGACCTGTTACTTACTCTGCTGGCTAGTTTTATG  150

seq1  TCAACATGACAAAAGCTATACTCATCTGAGAAGAGGGAACCTCCACTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACATGACAAAAGCTATACTCATCTGAGAAGAGGGAACCTCCACTGGA  200

seq1  AAAAAAATGCCTCCCTAAGATCAAGTTATAGGCAAGCCTGTAGGGCATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAATGCCTCCCTAAGATCAAGTTATAGGCAAGCCTGTAGGGCATTT  250

seq1  TCCTAATTAGTGATTGATGGGTCAGGGCCCAGTCCATTGTGAGTGGAGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAATTAGTGATTGATGGGTCAGGGCCCAGTCCATTGTGAGTGGAGCC  300

seq1  ATCCTGGGGCTGGTAGTCGTGGGTTCTAAAGCAGACTGAGCAAGCCATGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGGGGCTGGTAGTCGTGGGTTCTAAAGCAGACTGAGCAAGCCATGA  350

seq1  GGAGCAAGCCAGTAAGTGGCATCCCTCCATGGCCTCTGGATCAGCTCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCAAGCCAGTAAGTGGCATCCCTCCATGGCCTCTGGATCAGCTCCTG  400

seq1  ACACCAGGTTCCTGCCCTGTTTCCATTCCTATCTTGATTTCCTCCAATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCAGGTTCCTGCCCTGTTTCCATTCCTATCTTGATTTCCTCCAATGA  450

seq1  TGAACAGTGATGTGGTAGCATAGGCCAAATAAACTCTTCCCTCCCTAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAGTGATGTGGTAGCATAGGCCAAATAAACTCTTCCCTCCCTAAGT  500

seq1  TGCTTTGGTCATGGTGTTTCATCACAGCAATGGTCATTAATTGTGACTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTGGTCATGGTGTTTCATCACAGCAATGGTCATTAATTGTGACTAA  550

seq1  GACACTTTTGATTGGCTGCTTTGAGAGAAAAGAGAGGCAGAGCGTTTGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTTTTGATTGGCTGCTTTGAGAGAAAAGAGAGGCAGAGCGTTTGGG  600

seq1  GTGGAACTCTGATGAGGATGTCGGACTTCTAGGACCAGTCTTCTGGCTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAACTCTGATGAGGATGTCGGACTTCTAGGACCAGTCTTCTGGCTGG  650

seq1  GGAGAGGTGAGCTGTCGGAGGTGTGAAGTCTTTCAGGTACCGTGAGGAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGGTGAGCTGTCGGAGGTGTGAAGTCTTTCAGGTACCGTGAGGAAG  700

seq1  TGGTAAATGTGCCTGGTAACGCTAAGGGAGAGAAACTGGGGCAGGAGCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAAATGTGCCTGGTAACGCTAAGGGAGAGAAACTGGGGCAGGAGCCT  750

seq1  GTGAGACGGAGCAGGAAGGACTTCAGGCCCTTAGCCCTAACACTCCTGTG  800
      ||||||||||||| ||||||||||| ||||||||||||||||||||||||
seq2  GTGAGACGGAGCA-GAAGGACTTCA-GCCCTTAGCCCTAACACTCCTGTG  798

seq1  AGTGTCTGCAAGCAGAGGACTTGAGAGCAAGGGGCTTTAGGAATCATGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCTGCAAGCAGAGGACTTGAGAGCAAGGGGCTTTAGGAATCATGGA  848

seq1  GCTCAGAGAGGTAGGTGTTTCCCACCTCCTTTCCGGGATGCAATGGAAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGAGAGGTAGGTGTTTCCCACCTCCTTTCCGGGATGCAATGGAAGC  898

seq1  TTTTCTCTCAGGTTCCCGTGGTGGAAATGGCCTTGTTCATTCTGAGAACA  950
      |||||||||| ||||||||||||||||||| |||||||||||||||||||
seq2  TTTTCTCTCA-GTTCCCGTGGTGGAAATGG-CTTGTTCATTCTGAGAACA  946

seq1  CTAAACACATTTATTTGTTTTTCATTTGTTCAGGGCAAACAGGTCGGAGC  1000
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CT-AACACATTTATTTGTTTTTCATTTGTTCAGGGCAAACAGGTCGGAGC  995

seq1  AGTTCATGTGATTCCAGGTGCCGGTTATCTCTGCTACTTAATGCTTAACT  1050
      ||||||||||| |||| ||||||||||||||||||||||||||||| |||
seq2  AGTTCATGTGA-TCCA-GTGCCGGTTATCTCTGCTACTTAATGCTT-ACT  1042

seq1  CAACACACTCTGCCTGCACCCTTCCGGTTGCAACCCCTTCCCCCAAATTC  1100
      |||| |||| |||||| ||| ||| ||| || |||||||   ||||||| 
seq2  CAAC-CACTTTGCCTG-ACCTTTCGGGTGGC-ACCCCTT---CCAAATTT  1086

seq1  TCTTTCAGACCCAAGGAATTCTGCAGGGCTTCCCTGCGGTGTCACAGCCA  1150
        ||||| |||    |||||||||| ||||| ||||||||||||| ||||
seq2  CTTTTCAAACC---AGAATTCTGCA-GGCTT-CCTGCGGTGTCAC-GCCA  1130

seq1  GG  1152
      ||
seq2  GG  1132