BAC Information

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BAC

Clone NameB6Ng01-110L04
Chromosome6 (Build37)
Map Location 42,999,512 - 43,113,365
singlet/doubletdoublet
Overlap geneEG622841, Igk-V, Olfr443-ps1, GA_x5J8B7W6337-1183223-1183810, Olfr441, Olfr440-ps1, GA_x5J8B7W6337-1221999-1222591, Olfr438
Upstream geneTas2r139, Tas2r144, Gstk1, Tmem139, Casp2, Clcn1, 6330503C03Rik, Zyx, Epha1, Tas2r143, Tas2r135, Tas2r126, Olfr458, Olfr457, Olfr456, LOC232745, EG546896, Eapa2, BC011487, 3321401G04Rik, LOC100039918, GA_x5J8B7W6337-801345-802245, Olfr453, Olfr38, Olfr452, Olfr451-ps1, Olfr450, Olfr449, Olfr448, Olfr447, Olfr446, GA_x5J8B7W6337-1014614-1015483, Olfr444
Downstream geneOlfr437, Olfr13, GA_x5J8B7W6337-1270568-1271367, Olfr435, Olfr434, LOC665745, Olfr47, Arhgef5, Nobox, Tpk1, LOC665747, LOC546897, LOC665779
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-110L04.bB6Ng01-110L04.g
ACCDH917248DH917249
length1,1911,113
definitionDH917248|Mus musculus domesticus DNA, BAC clone: B6Ng01-110L04, 5' end.DH917249|Mus musculus domesticus DNA, BAC clone: B6Ng01-110L04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,999,512 - 43,000,722)(43,112,224 - 43,113,365)
sequence
gaattcaaccgagagaatagattgttgctgtaatgaacctaaccacatta
gattttggaggaatgtagaaattttggaactctggaaaataaaagcagtt
ggatgatgtaaacagtgcttaatgggccatcctcataggaaacagaaaga
caataaataagaaatgaataaacaaacaaacataaataaataagcccctg
ctctgccctggaacaaagggaaggctgtcttcagagcaaaattccaccca
gctaagcatgcaacttgtgaaacaaaaagagctgaggaatgctctgctcc
tagaaagcatcatgatatggccaggaagtggaatacagtggtttgaatag
caatgtcccccacaggctcgaatgtttggatattctcagttgctggttct
gtttagggagttctaagatacgatgtgggaggcagaatatgagtgtttaa
aatctccatgttacttatggttcactcactgttttgtgcttgcagttgtt
cgagatgtgagctttctgcttcctgctcccactgccctacctgtcaccat
catatggacacataaatttcttagttacttttctattgctgtgaaaacac
gccatgacgaaggcaactaataaaagtttattgggagcttagtttcagag
tgtgagtccatgaccatcatagtgcagagaacgtcaacagcaggcaaaca
tggcactggagcagtagctgagagcttatattcttattcacaagaatgaa
ggagaaagaaagggggctaactatgatagtgtgggcttttaacacttgaa
aggctaaccctagtgacagacctccagtggccataccttctagtcctccc
aaatagttctgtaaactagagaccaaacattcaaatagatgagcctatgt
gggccattctcatttgaaccatcacattaaccttctggaccataaaccaa
aataaactctttttctgtagttgtcttgtcatggtcttttattacagcac
caaaaacactaagtgggagtctgtatcaatgtggacagaggactaaatga
gtcactgtattctgatctttgcttccagtcaacaagttccaggagatcat
ggagaattgctctagtcctgcagctttgtctccttggtcgagaaagctgt
gggtacctgtagtttgactttatcacattcattctcaaggg
gaattctattcctcctgacagccttcaggagatgaaatcaaatataggac
gataaagggactcactgaaatgtctccaaagaaccccaggtgcatagttc
aatttacagtcagaggacaaaacacttctgtgtctctagcgagagttcaa
attcccagagaaactatatgacatcataacaatgtatcttctccctgagg
ggtgggcaggccagcatcttctgtttagaagacaaaaaaaaaaaaagatt
gtacctaatgagcttgaagaacaacgtctagaccagccaattacttttcc
acaatccctcaagtctctagaagataatgaaactcagataaagccaaaca
caatatccaatcttttgcagttgttacagtttcatggctttgtgtatcat
tagatctgttcttcctgagatgatagaactctcccagtgccagcgtgtac
ctttttttcttacagtgattgtgaaggattgcagacagcagctatgagca
atagtattgagtacccgttacacttcagacaatgcactgagatctttctg
tgatctctgaatcttaatttcatttctctcagtgtatagccatgaggacc
gacactgaaaactattatctcactgtggctcgaggactctgagaatgatg
gagaagtttccagaagatcaagaggatcaaaaccatttacataatgatat
tttgacaaactttgtccattttctctggcattctctcatgtgtacatgct
gaaaattgaagatacgaagtagagctgactattaaagccaaactttaaat
ttataaattgtgaactaatgaaaattttctgactttaatacaataacagt
ttcataaatgacaacatttatactcaatatatgcatgtgtaaataaagat
gattcaaagtaaaatttcaaaacctctgctttaatttctattataatatc
attccaaacttccttaagtccttagtaactctagagtataaagaaatctg
aaacagaagcatggaaatatgcagtagtgatagccaccactttagcagat
agagtacaaacatatgatcttcgattttatagcaccaagacgaggtagac
tagtgttagaatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_42999512_43000722
seq2: B6Ng01-110L04.b_46_1236

seq1  GAATTCAACCGAGAGAATAGATTGTTGCTGTAATGAACCTAACCACATTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACCGAGAGAATAGATTGTTGCTGTAATGAACCTAACCACATTA  50

seq1  GATTTTGGAGGAATGTAGAAATTTTGGAACTCTGGAAAATAAAAGCAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTGGAGGAATGTAGAAATTTTGGAACTCTGGAAAATAAAAGCAGTT  100

seq1  GGATGATGTAAACAGTGCTTAATGGGCCATCCTCATAGGAAACAGAAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGATGTAAACAGTGCTTAATGGGCCATCCTCATAGGAAACAGAAAGA  150

seq1  CAATAAATAAGAAATGAATAAACAAACAAACATAAATAAATAAGCCCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAATAAGAAATGAATAAACAAACAAACATAAATAAATAAGCCCCTG  200

seq1  CTCTGCCCTGGAACAAAGGGAAGGCTGTCTTCAGAGCAAAATTCCACCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCCTGGAACAAAGGGAAGGCTGTCTTCAGAGCAAAATTCCACCCA  250

seq1  GCTAAGCATGCAACTTGTGAAACAAAAAGAGCTGAGGAATGCTCTGCTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGCATGCAACTTGTGAAACAAAAAGAGCTGAGGAATGCTCTGCTCC  300

seq1  TAGAAAGCATCATGATATGGCCAGGAAGTGGAATACAGTGGTTTGAATAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAGCATCATGATATGGCCAGGAAGTGGAATACAGTGGTTTGAATAG  350

seq1  CAATGTCCCCCACAGGCTCGAATGTTTGGATATTCTCAGTTGCTGGTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTCCCCCACAGGCTCGAATGTTTGGATATTCTCAGTTGCTGGTTCT  400

seq1  GTTTAGGGAGTTCTAAGATACGATGTGGGAGGCAGAATATGAGTGTTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGGGAGTTCTAAGATACGATGTGGGAGGCAGAATATGAGTGTTTAA  450

seq1  AATCTCCATGTTACTTATGGTTCACTCACTGTTTTGTGCTTGCAGTTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCCATGTTACTTATGGTTCACTCACTGTTTTGTGCTTGCAGTTGTT  500

seq1  CGAGATGTGAGCTTTCTGCTTCCTGCTCCCACTGCCCTACCTGTCACCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGATGTGAGCTTTCTGCTTCCTGCTCCCACTGCCCTACCTGTCACCAT  550

seq1  CATATGGACACATAAATTTCTTAGTTACTTTTCTATTGCTGTGAAAACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGGACACATAAATTTCTTAGTTACTTTTCTATTGCTGTGAAAACAC  600

seq1  GCCATGACGAAGGCAACTAATAAAAGTTTATTGGGAGCTTAGTTTCAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGACGAAGGCAACTAATAAAAGTTTATTGGGAGCTTAGTTTCAGAG  650

seq1  TGTGAGTCCATGACCATCATAGTGCAGAGAACGTCAACAGCAGGCAAACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGTCCATGACCATCATAGTGCAGAGAACGTCAACAGCAGGCAAACA  700

seq1  TGGCACTGGAGCAGTAGCTGAGAGCTTATATTCTTATTCACAAGAATGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACTGGAGCAGTAGCTGAGAGCTTATATTCTTATTCACAAGAATGAA  750

seq1  GGAGAAAGAAGGGGGGCTAACTATGATAGTGTGGGCTTTTAACACTTGAA  800
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAAGAAAGGGGGCTAACTATGATAGTGTGGGCTTTTAACACTTGAA  800

seq1  AGGCTAACCCTAGTGACAGACCTCCAGTGGCCATACCTTCTAGTCCTCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTAACCCTAGTGACAGACCTCCAGTGGCCATACCTTCTAGTCCTCCC  850

seq1  AAATAGTTCTGTAAACTAGAGACCAAACATTCAAATAGATGAGCCTATGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGTTCTGTAAACTAGAGACCAAACATTCAAATAGATGAGCCTATGT  900

seq1  GGGCCATTCTCATTTGAACCATCACATTAACCTTCTGGACCATAAACCAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCATTCTCATTTGAACCATCACATTAACCTTCTGGACCATAAACCAA  950

seq1  AATAAACTCTTTTTCTGTAAGTTGTCTTGGTCATGGTCTTTTATTACAGC  1000
      |||||||||||||||||| ||||||||| |||||||||||||||||||||
seq2  AATAAACTCTTTTTCTGT-AGTTGTCTT-GTCATGGTCTTTTATTACAGC  998

seq1  AACCAAAAACAACTAAGTGGGAGGTCTGTATCAATGTGGACAGAGGAACT  1050
       ||||||||| ||||||||||| ||||||||||||||||||||||| |||
seq2  -ACCAAAAAC-ACTAAGTGGGA-GTCTGTATCAATGTGGACAGAGG-ACT  1044

seq1  AAATGGAAGTCACTGTATTCTGATCTTTGCCTTCCAAGGTCAACCAGGTC  1100
      |||||  |||||||||||||||||||||| ||||||  ||||| || || 
seq2  AAATG--AGTCACTGTATTCTGATCTTTG-CTTCCA--GTCAA-CAAGTT  1088

seq1  CCAGGAGATCATGAGAAATGGCTCCTAAGGTCCTGCAGCTCTGTCTCCTT  1150
      |||||||||||||   ||| ||| |||  ||||||||||| |||||||||
seq2  CCAGGAGATCATGGAGAATTGCT-CTA--GTCCTGCAGCTTTGTCTCCTT  1135

seq1  GGTCAGAG-AAGCTGTGGAAACCCTGATGTTTGACTCTATTCAACATTCA  1199
      |||| ||| |||||||||  | ||||  |||||||| |||   |||||||
seq2  GGTC-GAGAAAGCTGTGGGTA-CCTGTAGTTTGACTTTAT--CACATTCA  1181

seq1  TTCTCCAAAGGG  1211
      |||||  |||||
seq2  TTCTC--AAGGG  1191

seq1: chr6_43112224_43113365
seq2: B6Ng01-110L04.g_69_1181 (reverse)

seq1  CATTCTAACAACTAAGTCATAACCTCCGTCTTGGTGCTAATAATATCTGA  50
      ||||||||| ||| ||||   |||| |||||||||||| |||| ||| ||
seq2  CATTCTAAC-ACT-AGTC--TACCT-CGTCTTGGTGCT-ATAAAATC-GA  43

seq1  AGATCATATGTTTGTAACTCTAATCCTTGCTAAAGTGGTGGCTTATCACT  100
      ||||||||||||||| ||||| |||  ||||||||||||||| |||||| 
seq2  AGATCATATGTTTGT-ACTCT-ATC--TGCTAAAGTGGTGGC-TATCAC-  87

seq1  TACTGCAATTATTTTCCAATGCTTCTGTCTCAGAATATCTTTATACTCTT  150
      |||||||  |||||  | |||||||||| |||| || |||||||||||| 
seq2  TACTGCA--TATTT--CCATGCTTCTGTTTCAG-ATTTCTTTATACTCT-  131

seq1  AAGAGTTACTAAGGACCTTAAGGAAGTTTTGGAATTGATATTTATAATAG  200
       |||||||||||||| |||||||||| ||||||| ||||| |||||||||
seq2  -AGAGTTACTAAGGA-CTTAAGGAAG-TTTGGAA-TGATA-TTATAATAG  176

seq1  AAATTAAAGCAGAGGTTTTTGAAAATTTTACTTTGAATTCATCTTTATTT  250
      |||||||||||||||||||   ||||||||||||||| ||||||||||||
seq2  AAATTAAAGCAGAGGTTTT--GAAATTTTACTTTGAA-TCATCTTTATTT  223

seq1  ACACATGCATATATTGAGTATAAATGTTGTCATTTATGAAACTGTTATTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATGCATATATTGAGTATAAATGTTGTCATTTATGAAACTGTTATTG  273

seq1  TATTAAAGTCAGAAAATTTTCATTAGTTCACAATTTTATAAATTTTAAAG  350
      ||||||||||||||||||||||||||||||||| |||||||| |||||||
seq2  TATTAAAGTCAGAAAATTTTCATTAGTTCACAA-TTTATAAA-TTTAAAG  321

seq1  TTTGGCTTTAATAGTCAGCTCTACTTCGTATCTTCAATTTTCAGCATGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCTTTAATAGTCAGCTCTACTTCGTATCTTCAATTTTCAGCATGTA  371

seq1  CACATGAGAGAATGCCAGAGAAAATGGACAAAGTTTGTCAAAATATCATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGAGAGAATGCCAGAGAAAATGGACAAAGTTTGTCAAAATATCATT  421

seq1  ATGTAAATGGTTTTGATCCTCTTGATCTTCTGGAAACTTCTCCATCATTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAATGGTTTTGATCCTCTTGATCTTCTGGAAACTTCTCCATCATTC  471

seq1  TCAGAGTCCTCGAGCCACAGTGAGATAATAGTTTTCAGTGTCGGTCCTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGTCCTCGAGCCACAGTGAGATAATAGTTTTCAGTGTCGGTCCTCA  521

seq1  TGGCTATACACTGAGAGAAATGAAATTAAGATTCAGAGATCACAGAAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTATACACTGAGAGAAATGAAATTAAGATTCAGAGATCACAGAAAGA  571

seq1  TCTCAGTGCATTGTCTGAAGTGTAACGGGTACTCAATACTATTGCTCATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGTGCATTGTCTGAAGTGTAACGGGTACTCAATACTATTGCTCATA  621

seq1  GCTGCTGTCTGCAATCCTTCACAATCACTGTAAGAAAAAAAGGTACACGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTGTCTGCAATCCTTCACAATCACTGTAAGAAAAAAAGGTACACGC  671

seq1  TGGCACTGGGAGAGTTCTATCATCTCAGGAAGAACAGATCTAATGATACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACTGGGAGAGTTCTATCATCTCAGGAAGAACAGATCTAATGATACA  721

seq1  CAAAGCCATGAAACTGTAACAACTGCAAAAGATTGGATATTGTGTTTGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCCATGAAACTGTAACAACTGCAAAAGATTGGATATTGTGTTTGGC  771

seq1  TTTATCTGAGTTTCATTATCTTCTAGAGACTTGAGGGATTGTGGAAAAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCTGAGTTTCATTATCTTCTAGAGACTTGAGGGATTGTGGAAAAGT  821

seq1  AATTGGCTGGTCTAGACGTTGTTCTTCAAGCTCATTAGGTACAATCTTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGCTGGTCTAGACGTTGTTCTTCAAGCTCATTAGGTACAATCTTTT  871

seq1  TTTTTTTTTGTCTTCTAAACAGAAGATGCTGGCCTGCCCACCCCTCAGGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTGTCTTCTAAACAGAAGATGCTGGCCTGCCCACCCCTCAGGG  921

seq1  AGAAGATACATTGTTATGATGTCATATAGTTTCTCTGGGAATTTGAACTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGATACATTGTTATGATGTCATATAGTTTCTCTGGGAATTTGAACTC  971

seq1  TCGCTAGAGACACAGAAGTGTTTTGTCCTCTGACTGTAAATTGAACTATG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCTAGAGACACAGAAGTGTTTTGTCCTCTGACTGTAAATTGAACTATG  1021

seq1  CACCTGGGGTTCTTTGGAGACATTTCAGTGAGTCCCTTTATCGTCCTATA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGGGGTTCTTTGGAGACATTTCAGTGAGTCCCTTTATCGTCCTATA  1071

seq1  TTTGATTTCATCTCCTGAAGGCTGTCAGGAGGAATAGAATTC  1142
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATTTCATCTCCTGAAGGCTGTCAGGAGGAATAGAATTC  1113