BAC Information

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BAC

Clone NameB6Ng01-111C22
Chromosome6 (Build37)6 (Build37)
Map Location 18,835,441 - 18,835,96842,330,017 - 42,331,179
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSt7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7
Downstream geneLOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-111C22.bB6Ng01-111C22.g
ACCDH917599DH917600
length9441,133
definitionDH917599|Mus musculus domesticus DNA, BAC clone: B6Ng01-111C22, 5' end.DH917600|Mus musculus domesticus DNA, BAC clone: B6Ng01-111C22, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,835,441 - 18,835,968)(42,330,017 - 42,331,179)
sequence
gaattctttgttcagttctgagccccatttttaatggggttatttgattt
tctgaagtccaccttcttgagttctttatatatgttggatattagtcccc
tatctgatttaggataggtaaagatcctttcccaatctgttggtggtctt
tttgtcttattgacggtgtcttttgccttgcagaaactttggagtttcat
taggtcccatttgtcaattctcaatcttacagcacaagccattgctattc
tgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccact
ttctcctctataagtttcagtgtctctggttttatgtgaagttccttgat
ccacttagatttgaccttagtacaaggagataagtatggatcaattcgca
ttcttctacatgataacaaccagttgtgccagcaccaattgttgaaaatg
ctgtctttcttccactggatggttttagctcccttgtcgaagatcaagtg
accataggtgtgtgggttcatttctgggtcttcaattctattccattggt
ctactggtctgtctctataccagtaccatgcagtttttatcacaattgct
ctgtagtaaagctttaggtcaggcatggtgattcaaccagaggttctttt
acccttgagaagactttttgctatcctaggttttttgttattccagatga
atttgcaaattgctccttctaattcgttgaagaattgagttggaattctg
atggggattgcattgaatctgtagattgcttttggcaagatagccatttt
tacaatgttgatcctgccaatccatgagcatgggagatctttccatctct
gagatcttctttaatttctttcttcagagatttgaagtttttatcatata
gatctttcacttccttagttagagtcacgccaagatatttatat
gaattccaaacaaggatggaagagagggaatgacaaaagaaaaaggaagg
aggaatggaaatcagtaagaaaggaaaggaagtgggggcatgtggaggaa
gaaaaggaacgctacatttttgtaagtcgatgcctggctcagaggttagt
tagcatgagaatactccaaccttgtaaaccactctctcctgcggaaaatg
gagcacaaacagccaactgtgtcggcccttttatctcagcaggcacttcc
tcaaccaccagctctctgctctttgttgtatttgaagccatcggttcaac
agttaagccacttcgcagaaaactccttttcttcctggcctggttggaag
gccgttcttactgagatgaggaaatcaagaaatctttctacctcacagcc
tacccatctttataatcatgctaatatgtgaaagtcctaccactaatcca
gtccattgaaaagaagtgtttacctggtattctctgatttttgtaaacaa
atttcaatggctgaaatacctggagcagctgcagttaccaaccttgatca
ctatgtggctctcagactgtatggcctggtttggcgaggaagggatagat
ttagaaagttgtacattggtttcttaccaacagttgttattgtctttatt
tgcaatatgtatgcataggtgtgtctatagaatagtaactttgaaactgt
atatagaatatatgtaatttatagtatgtatagtagtaactttataatag
catttggaatatataatgtaaaatgcatctgtaatagtatataaaatgtg
tttataatatatagtatatataacagtaatttataacataacctttctaa
ggaattagaagaatttgtgaccatttgaatgaagatgtcctcatagtctc
aaaaattgaatagatagatgctcctcagtgggggctatgtgggacgatta
tcagtgcagcctgaggagattcacaagcagactttgagacttcaaagatt
cgcacagtcagttcactctctgcttccgctccgtttgctggtcaagatgg
gagccttcagctgctacccagctagcctatcttgcctgcgaactctagct
cggggctcaatataatcactctctgtaagctgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_18835441_18835968
seq2: B6Ng01-111C22.b_47_574 (reverse)

seq1  CCCAGAGATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAG  50
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAAATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAG  50

seq1  CTAAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGG  100

seq1  CACAACTGGTTGTTATCTTGTAGAAGAATGTGAATCGATCCATACTTATC  150
      ||||||||||||||||| |||||||||||| |||| ||||||||||||||
seq2  CACAACTGGTTGTTATCATGTAGAAGAATGCGAATTGATCCATACTTATC  150

seq1  TCCATGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAAC  200
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAAC  200

seq1  CAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGAT  250

seq1  ATGGGCAGAGGGGAAAAGTTCCTGAACAGAACAGCAATGGC-TGTGCTGT  299
      ||||||| ||||||||| ||||||||||||| ||||||||| ||||||||
seq2  ATGGGCACAGGGGAAAAATTCCTGAACAGAATAGCAATGGCTTGTGCTGT  300

seq1  GAGGTAGAGAATCGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCA  349
       || | |||||| |||||||||||||||||||||||||||||||||||||
seq2  AAGATTGAGAATTGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCA  350

seq1  AGGCAAAAGACACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAAAGACACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAA  400

seq1  AGGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATA  450

seq1  TAAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAATA  499
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TAAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAA-A  499

seq1  AATGGGGCTCAGAACTGAACAAAGAATTC  528
      |||||||||||||||||||||||||||||
seq2  AATGGGGCTCAGAACTGAACAAAGAATTC  528

seq1: chr6_42330017_42331179
seq2: B6Ng01-111C22.g_68_1200 (reverse)

seq1  GCAGCTTACAGAAGAAGTGATTTTATTTTGGAGACTCCGGAAGCTTGGAG  50
      ||||||||||||   ||||||| ||||   ||| | |||  ||| | |||
seq2  GCAGCTTACAGA--GAGTGATTATATT---GAG-CCCCG--AGC-TAGAG  41

seq1  TCTGCATGGCAGATCACGGCTAGCTGGGGTAGCAGCTGAGAGCTCCCATC  100
      |  ||| |  ||||   |||||||| |||||||||||||  |||||||||
seq2  TTCGCAGGCAAGAT--AGGCTAGCT-GGGTAGCAGCTGAAGGCTCCCATC  88

seq1  TTGGACAGCAAACGGGAAGCGGGAAGCAGAGAGTGAACTTGAACTGGTGC  150
      |||  ||||||||||  ||| ||||||||||||||||||   ||| ||||
seq2  TTGACCAGCAAACGG--AGC-GGAAGCAGAGAGTGAACT--GACT-GTGC  132

seq1  GAATCCTTTGAAGTCTC-AAGTCTGCTCTGGTGACATCCTTCCTCAGGCT  199
      |||| |||||||||||| |||||||  || |||| |||  ||||||||||
seq2  GAAT-CTTTGAAGTCTCAAAGTCTG--CTTGTGA-ATC--TCCTCAGGCT  176

seq1  GCACTGATAATCCGTCCCACATAGCCACCCACTGAGGAGCATCTATCTAT  249
      ||||||||||| |||||||||||||| |||||||||||||||||||||||
seq2  GCACTGATAAT-CGTCCCACATAGCC-CCCACTGAGGAGCATCTATCTAT  224

seq1  TCAAATATCTGAGACTTATGAGGGACATC-TCATTCAAATGGTCACAAAT  298
      || ||| | |||||| ||||| ||||||| ||||||||||||||||||| 
seq2  TC-AATTTTTGAGAC-TATGA-GGACATCTTCATTCAAATGGTCACAAA-  270

seq1  TTCTTCTAATTCCCTTAGAAAGGTATTGTTATAAATTACTGTTATATATA  348
      ||||||||||| ||||||||||||  ||||||||||||||||||||||||
seq2  TTCTTCTAATT-CCTTAGAAAGGTTATGTTATAAATTACTGTTATATATA  319

seq1  CTATATATTATAAACACATTTTATATACTATTACAGATGCATTTTACATT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATATTATAAACACATTTTATATACTATTACAGATGCATTTTACATT  369

seq1  ATATATTCCAAATGCTATTATAAAGTTACTACTATACATACTATAAATTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTCCAAATGCTATTATAAAGTTACTACTATACATACTATAAATTA  419

seq1  CATATATTCTATATACAGTTTCAAAGTTACTATTCTATAGACACACCTAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATTCTATATACAGTTTCAAAGTTACTATTCTATAGACACACCTAT  469

seq1  GCATACATATTTGCAAATAAAGACAATAACAACTGTTGGTAAGAAACCAA  548
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GCATACATA-TTGCAAATAAAGACAATAACAACTGTTGGTAAGAAACCAA  518

seq1  TGTACAACTTTCTAAATCTATCCCTTCCTCGCCAAACCAGGCCATACAGT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACAACTTTCTAAATCTATCCCTTCCTCGCCAAACCAGGCCATACAGT  568

seq1  CTGAGAGCCACCTAGTGATCAAGGTTGGTAACTGCAGCTGCTCCAGGTAT  648
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAGCCACATAGTGATCAAGGTTGGTAACTGCAGCTGCTCCAGGTAT  618

seq1  TTCAGCCATTGAAATTTGTTTACAAAAATCAGAGAATACCAGGTAAACAC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCCATTGAAATTTGTTTACAAAAATCAGAGAATACCAGGTAAACAC  668

seq1  TTCTTTTCAATGGACTGGATTAGTGGTAGGACTTTCACATATTAGCATGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTCAATGGACTGGATTAGTGGTAGGACTTTCACATATTAGCATGA  718

seq1  TTATAAAGATGGGTAGGCTGTGAGGTAGAAAGATTTCTTGATTTCCTCAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAAGATGGGTAGGCTGTGAGGTAGAAAGATTTCTTGATTTCCTCAT  768

seq1  CTCAGTAAGAACGGCCTTCCAACCAGGCCAGGAAGAAAAGGAGTTTTCTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTAAGAACGGCCTTCCAACCAGGCCAGGAAGAAAAGGAGTTTTCTG  818

seq1  CGAAGTGGCTTAACTGTTGAACCGATGGCTTCAAATACAACAAAGAGCAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAGTGGCTTAACTGTTGAACCGATGGCTTCAAATACAACAAAGAGCAG  868

seq1  AGAGCTGGTGGTTGAGGAAGTGCCTGCTGAGATAAAAGGGCCGACACAGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTGGTGGTTGAGGAAGTGCCTGCTGAGATAAAAGGGCCGACACAGT  918

seq1  TGGCTGTTTGTGCTCCATTTTCCGCAGGAGAGAGTGGTTTACAAGGTTGG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGTTTGTGCTCCATTTTCCGCAGGAGAGAGTGGTTTACAAGGTTGG  968

seq1  AGTATTCTCATGCTAACTAACCTCTGAGCCAGGCATCGACTTACAAAAAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTCTCATGCTAACTAACCTCTGAGCCAGGCATCGACTTACAAAAAT  1018

seq1  GTAGCGTTCCTTTTCTTCCTCCACATGCCCCCACTTCCTTTCCTTTCTTA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCGTTCCTTTTCTTCCTCCACATGCCCCCACTTCCTTTCCTTTCTTA  1068

seq1  CTGATTTCCATTCCTCCTTCCTTTTTCTTTTGTCATTCCCTCTCTTCCAT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTTCCATTCCTCCTTCCTTTTTCTTTTGTCATTCCCTCTCTTCCAT  1118

seq1  CCTTGTTTGGAATTC  1163
      |||||||||||||||
seq2  CCTTGTTTGGAATTC  1133