BAC Information

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BAC

Clone NameB6Ng01-111I10
Chromosome6 (Build37)
Map Location 117,160,953 - 117,256,263
singlet/doubletdoublet
Overlap geneLOC213422, EG640142
Upstream geneD6Wsu116e, Anubl1, March8, Alox5, LOC100043432, Olfr211, Olfr212, Olfr213, EG434080, Olfr214, Olfr215, Zfp422, Rassf4, 8430408G22Rik, C230095G01Rik, LOC100043439, Cxcl12
Downstream geneLOC100043777, LOC621462, EG640370, EG621705, LOC100043779, Zfp637, Zfp239, 4933440N22Rik, Hnrpf, Fxyd4, LOC232338, Rasgef1a, Galnact2, Ret, 1700069P05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-111I10.bB6Ng01-111I10.g
ACCDH917846DH917847
length339913
definitionDH917846|Mus musculus domesticus DNA, BAC clone: B6Ng01-111I10, 5' end.DH917847|Mus musculus domesticus DNA, BAC clone: B6Ng01-111I10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,255,925 - 117,256,263)(117,160,953 - 117,161,641)
sequence
ttccacccattgttcctaacttcacatgatgccaggaggaacatgtcatt
gtccaagatgtgataattaagaaaaccacgtctcacagaagccatgaggc
atgaccagagccacaattactaagcagcgaatcctggtttactattgtct
atgtgccccaaaggtttccttcatgtggaatgaatctcttggttccagca
ggcccagtggggagtggtgggctggcctgtcagagcagcctgaagatgca
gcaactcaggtggaacctgtggttttcacagagtgagtaatgaagacaag
tttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
gaattcctaagagaaggctggaggtgttgcttggtggcagagccagagtt
tggcatgtgtgagccactaagttcaatacagtgccccatagtcaaactca
tgggagtctgtgaagaaggaaagaagtagaaactttggtaattacaacat
cttttaatttttctcttaagaaaatgtatcagtgcaactttttttttaat
tagatattttcttcatttacatttcaaatgctatgccctttcctactttc
ctctctgaaagttgcctataccctccccctgccctgctccccaacccacc
cactcccacttcatggccctggcattcccctgtactggggcagataatct
tcgcaagaccaagggcctttcctcccattgatggcctactaggccatcct
ctgctacatatgcaactagagacaaaagccctgggagtactgattagttc
atattgctgttccacctatagggttgcagaccccttcggctcttgggtac
tttctctagctctttcattggggaccctgtgttccatccaatagatgact
gtgagcatccacttctgtattttccaggcactgccatagcctcacaagag
atagctatgtcaaggtcctgtcagcaaaatcctgctggcatatgcaataa
tgtctgggtttggtagttgtttatgggatggatccccgggtgggacagtc
tctggatggtccttccttccatctcagctccaaactttgtctttgtaact
ccttccatgggtatcttgttccccattctaagaaggaacgaagtatccac
actttggtcttccttctttttgagtttcatgtgttttgcaagttgtatct
tgggtattctaagttctgggctaatatccatttatcagtgagtgcatatc
gtgtgtgttcttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_117255925_117256263
seq2: B6Ng01-111I10.b_53_391 (reverse)

seq1  ACACACACACACACACACACACACACACACACACACAAACTTGTCTTCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACACACACAAACTTGTCTTCAT  50

seq1  TACTCACTCTGTGAAAACCACAGGTTCCACCTGAGTTGCTGCATCTTCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCACTCTGTGAAAACCACAGGTTCCACCTGAGTTGCTGCATCTTCAG  100

seq1  GCTGCTCTGACAGGCCAGCCCACCACTCCCCACTGGGCCTGCTGGAACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTCTGACAGGCCAGCCCACCACTCCCCACTGGGCCTGCTGGAACCA  150

seq1  AGAGATTCATTCCACATGAAGGAAACCTTTGGGGCACATAGACAATAGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATTCATTCCACATGAAGGAAACCTTTGGGGCACATAGACAATAGTA  200

seq1  AACCAGGATTCGCTGCTTAGTAATTGTGGCTCTGGTCATGCCTCATGGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGGATTCGCTGCTTAGTAATTGTGGCTCTGGTCATGCCTCATGGCT  250

seq1  TCTGTGAGACGTGGTTTTCTTAATTATCACATCTTGGACAATGACATGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGAGACGTGGTTTTCTTAATTATCACATCTTGGACAATGACATGTT  300

seq1  CCTCCTGGCATCATGTGAAGTTAGGAACAATGGGTGGAA  339
      |||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTGGCATCATGTGAAGTTAGGAACAATGGGTGGAA  339

seq1: chr6_117160953_117161641
seq2: B6Ng01-111I10.g_68_756

seq1  GAATTCCTAAGAGAAGGCTGGAGGTGTTGCTTGGTGGCAGAGCCAGAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAAGAGAAGGCTGGAGGTGTTGCTTGGTGGCAGAGCCAGAGTT  50

seq1  TGGCATGTGTGAGCCACTAAGTTCAATACAGTGCCCCATAGTCAAACTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATGTGTGAGCCACTAAGTTCAATACAGTGCCCCATAGTCAAACTCA  100

seq1  TGGGAGTCTGTGAAGAAGGAAAGAAGTAGAAACTTTGGTAATTACAACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGTCTGTGAAGAAGGAAAGAAGTAGAAACTTTGGTAATTACAACAT  150

seq1  CTTTTAATTTTTCTCTTAAGAAAATGTATCAGTGCAACTTTTTTTTTAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAATTTTTCTCTTAAGAAAATGTATCAGTGCAACTTTTTTTTTAAT  200

seq1  TAGATATTTTCTTCATTTACATTTCAAATGCTATGCCCTTTCCTACTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATATTTTCTTCATTTACATTTCAAATGCTATGCCCTTTCCTACTTTC  250

seq1  CTCTCTGAAAGTTGCCTATACCCTCCCCCTGCCCTGCTCCCCAACCCACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGAAAGTTGCCTATACCCTCCCCCTGCCCTGCTCCCCAACCCACC  300

seq1  CACTCCCACTTCATGGCCCTGGCATTCCCCTGTACTGGGGCAGATAATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCCACTTCATGGCCCTGGCATTCCCCTGTACTGGGGCAGATAATCT  350

seq1  TCGCAAGACCAAGGGCCTTTCCTCCCATTGATGGCCTACTAGGCCATCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCAAGACCAAGGGCCTTTCCTCCCATTGATGGCCTACTAGGCCATCCT  400

seq1  CTGCTACATATGCAACTAGAGACAAAAGCCCTGGGAGTACTGATTAGTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTACATATGCAACTAGAGACAAAAGCCCTGGGAGTACTGATTAGTTC  450

seq1  ATATTGCTGTTCCACCTATAGGGTTGCAGACCCCTTCGGCTCTTGGGTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGCTGTTCCACCTATAGGGTTGCAGACCCCTTCGGCTCTTGGGTAC  500

seq1  TTTCTCTAGCTCTTTCATTGGGGACCCTGTGTTCCATCCAATAGATGACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTAGCTCTTTCATTGGGGACCCTGTGTTCCATCCAATAGATGACT  550

seq1  GTGAGCATCCACTTCTGTATTTTCCAGGCACTGCCATAGCCTCACAAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCATCCACTTCTGTATTTTCCAGGCACTGCCATAGCCTCACAAGAG  600

seq1  ATAGCTATGTCAAGGTCCTGTCAGCAAAATCCTGCTGGCATATGCAATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTATGTCAAGGTCCTGTCAGCAAAATCCTGCTGGCATATGCAATAA  650

seq1  TGTCTGGGTTTGGTAGTTGTTTATGGGATGGATCCCCGG  689
      |||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGGGTTTGGTAGTTGTTTATGGGATGGATCCCCGG  689