BAC Information

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BAC

Clone NameB6Ng01-111K01
Chromosome6 (Build37)
Map Location 129,392,141 - 129,527,424
singlet/doubletdoublet
Overlap geneClec1a, Clec7a, Olr1, D630042F21Rik, Gabarapl1
Upstream geneEG667598, Pzp, LOC384494, EG667610, BC048546, Klrb1a, EG545878, LOC677440, Clec2h, LOC100043863, LOC100043861, Klrb1c, LOC100043862, Klrb1d, LOC667706, Clec2i, Clec2g, LOC667715, BC064078, Clec2f, Klrb1f, Clec2e, Klrb1-ps1, Clec2d, Cd69, 4922502D21Rik, Clec12a, 4933425B16Rik, Clec1b, Clec9a
Downstream geneKlre1, Klrd1, Klrk1, Klrc3, Klrc2, Klrc1, LOC640755, Klri1, Klri2, Gm156, Klra17, Klra5, LOC667764, Klra6, LOC100038893, LOC100038894, LOC100038895, Klra4, LOC667769, LOC100038897, Klra8, EG654449, Klra9, Klra7, LOC100038898, Klra12, Klra10, Klra13, Klra3, Klra1, LOC100038902, LOC100038903, LOC625436, EG625473, LOC640779, LOC667793
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-111K01.bB6Ng01-111K01.g
ACCDH917922DH917923
length812974
definitionDH917922|Mus musculus domesticus DNA, BAC clone: B6Ng01-111K01, 5' end.DH917923|Mus musculus domesticus DNA, BAC clone: B6Ng01-111K01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(129,526,613 - 129,527,424)(129,392,141 - 129,392,956)
sequence
gaattcttcctagtggatttctctttgactacgtatacatatgcagaagt
tctgtctcatgttttgcatcttttttttgtaaaattgaaagttaagtaac
taaaaagatgggaaacaaaattactgttactctccccaggccagactttc
agaatcactaagtgtcttaaacattctagtaatgagaagtccggaaagaa
aacaaacagagtggaggagattctgtgaatttgcagccccaaaactgcca
ccagtgggaagcatgcttaagagtgggagggtaagaaagactctggccat
gagtcccctgaaccagtctgtggagtcttatatcctccaactattctcat
cctgggtctcttttcgtatccctgatagtcccccttcactcagaggcctg
ggaaatggctcaattctcctagctgtgcagtttgaggagtctgcctcaca
gtcctggggcctctactatttatgtgcagctgagatgtctggattctgga
cttgacagcaataaagaatgtcaagatgagccaaactgacacaaacttgg
cctggttgttgatcaggagatacaatttgaattgtatcagagagaagtga
ccctcagggccatcaaccttggaaagagatttagggattttggaattaca
gtatttagagggaagaaagaaaacattgcaactctttgaagtataaatga
aatcactgggtcatttatgagcacactagacaggcttacacacaagaaag
gaattttttaagaacaaaagcatgaatggataaagggatggatggatggg
tggatagataga
gaattctctctatagatgaaaggattccggtgggtagctttcaggtgaaa
ttaacactgtagggtgatttttctaggtattctaactgggcatctcacag
aacaacttggctcaaatacagtgtcaaagagctactacatatattctgca
tgggaataagtaaaattcctacaaaccaacttggggcaatgaatggatta
taagatcacttgaataagtagttcccaatttaaagacaaaagtgtgatac
tattctagtaatggtctaaatttgtcaatctactaaaattttctattctc
tgaataaacatgttttcccataaaaaatggggtacggagctaaatgtaaa
attctcaaaagaagatacacaaatggctgagaaacactcaaagaaatatt
caacttctttagttattagggaattgcaaatcaaaactaccttgagattt
ctttctacaccagttggaatgcccaagattaataaaacaaagaagaatga
gaaacaccaatagtccagatacaagctctttgatctgcaatgttgacctt
catgcaagactcactaatgaatgaagttgtggtagtaactatccaatatc
taattagatttaaggcttacttcatgaaatggaatccattgccaacaatt
ctcagatggttagaacctgagactagattgatcagagctctaggggaaaa
ctaaacactactgttctgctaaaggaacatagcaataaaatgacttctaa
tgatgttgctctgctatactcatagatgtgtgccttcatcaaccattatc
agagatgtttcctcctgtaacagttgggagcagagacccacagccaatgt
gcagagagtgaaacctttaggaatcaaagtcatacctcaagctgtatgta
ctacagagcaattgtgataaaactgtctggtactagtacagtgacagaca
gtagatcaatggaatagactgaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_129526613_129527424
seq2: B6Ng01-111K01.b_42_853 (reverse)

seq1  TCTATCTATCCACCCATCCATCCATCCCTTTATCCATTCATGCTTTTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCTATCCACCCATCCATCCATCCCTTTATCCATTCATGCTTTTGTT  50

seq1  CTTAAAAAATTCCTTTCTTGTGTGTAAGCCTGTCTAGTGTGCTCATAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAAAATTCCTTTCTTGTGTGTAAGCCTGTCTAGTGTGCTCATAAAT  100

seq1  GACCCAGTGATTTCATTTATACTTCAAAGAGTTGCAATGTTTTCTTTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCAGTGATTTCATTTATACTTCAAAGAGTTGCAATGTTTTCTTTCTT  150

seq1  CCCTCTAAATACTGTAATTCCAAAATCCCTAAATCTCTTTCCAAGGTTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTAAATACTGTAATTCCAAAATCCCTAAATCTCTTTCCAAGGTTGA  200

seq1  TGGCCCTGAGGGTCACTTCTCTCTGATACAATTCAAATTGTATCTCCTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCTGAGGGTCACTTCTCTCTGATACAATTCAAATTGTATCTCCTGA  250

seq1  TCAACAACCAGGCCAAGTTTGTGTCAGTTTGGCTCATCTTGACATTCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAACCAGGCCAAGTTTGTGTCAGTTTGGCTCATCTTGACATTCTTT  300

seq1  ATTGCTGTCAAGTCCAGAATCCAGACATCTCAGCTGCACATAAATAGTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTGTCAAGTCCAGAATCCAGACATCTCAGCTGCACATAAATAGTAG  350

seq1  AGGCCCCAGGACTGTGAGGCAGACTCCTCAAACTGCACAGCTAGGAGAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCCAGGACTGTGAGGCAGACTCCTCAAACTGCACAGCTAGGAGAAT  400

seq1  TGAGCCATTTCCCAGGCCTCTGAGTGAAGGGGGACTATCAGGGATACGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCATTTCCCAGGCCTCTGAGTGAAGGGGGACTATCAGGGATACGAA  450

seq1  AAGAGACCCAGGATGAGAATAGTTGGAGGATATAAGACTCCACAGACTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGACCCAGGATGAGAATAGTTGGAGGATATAAGACTCCACAGACTGG  500

seq1  TTCAGGGGACTCATGGCCAGAGTCTTTCTTACCCTCCCACTCTTAAGCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGGGACTCATGGCCAGAGTCTTTCTTACCCTCCCACTCTTAAGCAT  550

seq1  GCTTCCCACTGGTGGCAGTTTTGGGGCTGCAAATTCACAGAATCTCCTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCCACTGGTGGCAGTTTTGGGGCTGCAAATTCACAGAATCTCCTCC  600

seq1  ACTCTGTTTGTTTTCTTTCCGGACTTCTCATTACTAGAATGTTTAAGACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGTTTGTTTTCTTTCCGGACTTCTCATTACTAGAATGTTTAAGACA  650

seq1  CTTAGTGATTCTGAAAGTCTGGCCTGGGGAGAGTAACAGTAATTTTGTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTGATTCTGAAAGTCTGGCCTGGGGAGAGTAACAGTAATTTTGTTT  700

seq1  CCCATCTTTTTAGTTACTTAACTTTCAATTTTACAAAAAAAAGATGCAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCTTTTTAGTTACTTAACTTTCAATTTTACAAAAAAAAGATGCAAA  750

seq1  ACATGAGACAGAACTTCTGCATATGTATACGTAGTCAAAGAGAAATCCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAGACAGAACTTCTGCATATGTATACGTAGTCAAAGAGAAATCCAC  800

seq1  TAGGAAGAATTC  812
      ||||||||||||
seq2  TAGGAAGAATTC  812

seq1: chr6_129392141_129392956
seq2: B6Ng01-111K01.g_66_881

seq1  GAATTCTCTCTATAGATGAAAGGATTCCGGTGGGTAGCTTTCAGGTGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCTATAGATGAAAGGATTCCGGTGGGTAGCTTTCAGGTGAAA  50

seq1  TTAACACTGTAGGGTGATTTTTCTAGGTATTCTAACTGGGCATCTCACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACACTGTAGGGTGATTTTTCTAGGTATTCTAACTGGGCATCTCACAG  100

seq1  AACAACTTGGCTCAAATACAGTGTCAAAGAGCTACTACATATATTCTGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACTTGGCTCAAATACAGTGTCAAAGAGCTACTACATATATTCTGCA  150

seq1  TGGGAATAAGTAAAATTCCTACAAACCAACTTGGGGCAATGAATGGATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAATAAGTAAAATTCCTACAAACCAACTTGGGGCAATGAATGGATTA  200

seq1  TAAGATCACTTGAATAAGTAGTTCCCAATTTAAAGACAAAAGTGTGATAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATCACTTGAATAAGTAGTTCCCAATTTAAAGACAAAAGTGTGATAC  250

seq1  TATTCTAGTAATGGTCTAAATTTGTCAATCTACTAAAATTTTCTATTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTAGTAATGGTCTAAATTTGTCAATCTACTAAAATTTTCTATTCTC  300

seq1  TGAATAAACATGTTTTCCCATAAAAAATGGGGTACGGAGCTAAATGTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAAACATGTTTTCCCATAAAAAATGGGGTACGGAGCTAAATGTAAA  350

seq1  ATTCTCAAAAGAAGATACACAAATGGCTGAGAAACACTCAAAGAAATATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCAAAAGAAGATACACAAATGGCTGAGAAACACTCAAAGAAATATT  400

seq1  CAACTTCTTTAGTTATTAGGGAATTGCAAATCAAAACTACCTTGAGATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTCTTTAGTTATTAGGGAATTGCAAATCAAAACTACCTTGAGATTT  450

seq1  CTTTCTACACCAGTTGGAATGCCCAAGATTAATAAAACAAAGAAGAATGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTACACCAGTTGGAATGCCCAAGATTAATAAAACAAAGAAGAATGA  500

seq1  GAAACACCAATAGTCCAGATACAAGCTCTTTGATCTGCAATGTTGACCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACACCAATAGTCCAGATACAAGCTCTTTGATCTGCAATGTTGACCTT  550

seq1  CATGCAAGACTCACTAATGAATGAAGTTGTGGTAGTAACTATCCAATATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAAGACTCACTAATGAATGAAGTTGTGGTAGTAACTATCCAATATC  600

seq1  TAATTAGATTTAAGGCTTACTTCATGAAATGGAATCCATTGCCAACAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAGATTTAAGGCTTACTTCATGAAATGGAATCCATTGCCAACAATT  650

seq1  CTCAGATGGTTAGAACCTGAGACTAGATTGATCAGAGCTCTAGGGGAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGATGGTTAGAACCTGAGACTAGATTGATCAGAGCTCTAGGGGAAAA  700

seq1  CTAAACACTACTGTTCTGCTAAAGGAACATAGCAATAAAATGACTTCTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACACTACTGTTCTGCTAAAGGAACATAGCAATAAAATGACTTCTAA  750

seq1  TGATGTTGCTCTGCTATACTCATAGATGTGTGCCTTCATCAACCATTATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTTGCTCTGCTATACTCATAGATGTGTGCCTTCATCAACCATTATC  800

seq1  AGAGATGTTTCCTCCT  816
      ||||||||||||||||
seq2  AGAGATGTTTCCTCCT  816