BAC Information

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BAC

Clone NameB6Ng01-111L04
Chromosome6 (Build37)
Map Location 115,755,777 - 115,757,020
singlet/doubletsinglet
Overlap geneRpl32
Upstream geneAtg7, Vgll4, 1500001M20Rik, LOC100043420, Syn2, Timp4, Pparg, Tsen2, 2510049J12Rik, Mkrn2, Raf1, LOC100043759, D830050J10Rik, Tmem40, EG620848, Cand2
Downstream geneBC060267, Mbd4, Ift122, Rho, H1foo, Plxnd1, Tmcc1, LOC100043425, EG666634, EG666648, D6Wsu116e, Anubl1, March8, Alox5, LOC100043432, Olfr211, Olfr212, Olfr213, EG434080, Olfr214, Olfr215, Zfp422, Rassf4, 8430408G22Rik, C230095G01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-111L04.bB6Ng01-111L04.g
ACCDH917974DH917975
length1,1631,130
definitionDH917974|Mus musculus domesticus DNA, BAC clone: B6Ng01-111L04, 5' end.DH917975|Mus musculus domesticus DNA, BAC clone: B6Ng01-111L04, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttccactggagccaaaggcttccagtgcaaccactgtaaggtac
acagttcaagcagcgtgaacaacaaacactgcccgtgttccctcaaagtg
ttgacaatctgtcctaatgaacacattcccagcatggagatgaccgtgaa
gccatagaccgggagctgaggaaaaacccctagagaagcaggatggcaga
gctatggaaagcatacaaatggcaaatacctaatacagacagacaccacc
tgacagatttggggacagagtgcatcacgttctaacctgaagcacccatc
ccgggccacatgcatttatagctgtctagcacactcaccattcacaagtc
acatgctgccatatcccaccccaggactctttaccactcaggaaccaatg
gtttttctgtaactaccctccaacttgccctgctccccagctatacagag
gaaaatgcccagagacagaactcagtgagcggtgcacctgcagggtctga
caaggccaagcagctctcctggggcagatgtacccattagaaatgcagcc
cccataacactgcaccatcaacactgcctcatggactgctgctgtacaac
acacattctctctcctgcatccatccttccaaatgaacttgtagcacttc
aaggcctggttaaatgcacaacataatctccccataggactcctccatct
gcatgacaaccacctcagaaaacaaatccttataaccccgaacacataca
ctctctgcagtcctagtttacttgggaaaaataaactattcccatcacac
cctcatatccaatgtcaagagtatttcctgagaggccttggttttgcatc
tcagaggtcaccaagggttgtaacttgctcaaagtacccagaatacccca
caaccttctctctacagctgtgcctggagactttttctctacctcagccc
caaagacctgagctgctctgcaaatcacccgtcagagcagagcagcacag
ctagtcccagtagaccagccctgcagtctcatgacactatagcaatgtcc
acacagacataagacactgactcactgtaaagactcttctcagtctcagc
tcacagaaccgtctcttctctaagcatgccactgcatgccagtctcatga
gcagcatcagcag
gaattcaaatgttcaacatgacctggcttcttaatttaaaactattggtt
aaataaagatgctgatagtcaatagcggaacagaagagacataggcaggg
cttggggtcccctggcatagtgtcagaagagaaccatagggagagaaaga
gaagaaggtggggttggagggatgatgactcagtggttaagagcactgac
tgctcttccagaggtcctgagttcaaatcccagcaatcacatggtggctc
acaactatctataatgaagatctgatgccctcttctggtctgttggaaga
cagctacagtgtacttatatataataaacaaataaatcttaaaaaaaaaa
aaaaaaggaagaaaggaaggaagaaagagaagaaggtggagaggggagga
agctgccatggggtaagtgaatcataaaaacatagccatgagtgttgtgt
ccggccagcagaccacaacctgggttctagcctggaaaggcattttggaa
acctggaagagaagaggggctaggtggcgagagaaaagaatgtagccaag
acagttactctgatcaaggctcaaattttattgttgcgacactagttatg
aaggaagggggaggggacccgattcccgccgaataatctcgggtccagta
gaaaggtgcacgtgtgtggctcctcaggttccagcagtgggcgtggcaga
acgaatgagcaggaagctccaccccgagcaagcaggtttcaggctggggg
aggggagactacatctcctcccttttattaacaaattttaaaaaagaaaa
agctggcctgagggggaaaaattttctatgctcaatagttctgcctggaa
tctagggctaagaaaaaacttgcttcactggggattctttacttttctta
gggaaactgtatctggcttagactgtccttctatcttagggacactaact
gaaaagctggacctgtaggtcctgactttatatgctactagtactggcag
gaactttctagttgatttagcaggcgttggaacttgctagcttgatgaac
aatgtaatttactcatattaactaagtgaatttctcacttttcgatatag
agggaaactgggcaaggattcaccggccta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_115755777_115757020
seq2: B6Ng01-111L04.b_41_1203

seq1  GAATTCTTCCACTGGAGCCAAAGGCTTCCAGTGCAACCACTGTAAGGTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCACTGGAGCCAAAGGCTTCCAGTGCAACCACTGTAAGGTAC  50

seq1  ACAGTTCAAGCAGCGTGAACAACAAACACTGCCCGTGTTCCCTCAAAGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTCAAGCAGCGTGAACAACAAACACTGCCCGTGTTCCCTCAAAGTG  100

seq1  TTGACAATCTGTCCTAATGAACACATTCCCAGCATGGAGATGACCGTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACAATCTGTCCTAATGAACACATTCCCAGCATGGAGATGACCGTGAA  150

seq1  GCCATAGACCGGGAGCTGAGGAAAAACCCCTAGAGAAGCAGGATGGCAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATAGACCGGGAGCTGAGGAAAAACCCCTAGAGAAGCAGGATGGCAGA  200

seq1  GCTATGGAAAGCATACAAATGGCAAATACCTAATACAGACAGACACCACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATGGAAAGCATACAAATGGCAAATACCTAATACAGACAGACACCACC  250

seq1  TGACAGATTTGGGGACAGAGTGCATCACGTTCTAACCTGAAGCACCCATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGATTTGGGGACAGAGTGCATCACGTTCTAACCTGAAGCACCCATC  300

seq1  CCGGGCCACATGCATTTATAGCTGTCTAGCACACTCACCATTCACAAGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGGCCACATGCATTTATAGCTGTCTAGCACACTCACCATTCACAAGTC  350

seq1  ACATGCTGCCATATCCCACCCCAGGACTCTTTACCACTCAGGAACCAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCTGCCATATCCCACCCCAGGACTCTTTACCACTCAGGAACCAATG  400

seq1  GTTTTTCTGTAACTACCCTCCAACTTGCCCTGCTCCCCAGCTATACAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTCTGTAACTACCCTCCAACTTGCCCTGCTCCCCAGCTATACAGAG  450

seq1  GAAAATGCCCAGAGACAGAACTCAGTGAGCGGTGCACCTGCAGGGTCTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGCCCAGAGACAGAACTCAGTGAGCGGTGCACCTGCAGGGTCTGA  500

seq1  CAAGGCCAAGCAGCTCTCCTGGGGCAGATGTACCCATTAGAAATGCAGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCCAAGCAGCTCTCCTGGGGCAGATGTACCCATTAGAAATGCAGCC  550

seq1  CCCATAACACTGCACCATCAACACTGCCTCATGGACTGCTGCTGTACAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATAACACTGCACCATCAACACTGCCTCATGGACTGCTGCTGTACAAC  600

seq1  ACACATTCTCTCTCCTGCATCCATCCTTCCAAATGAACTTGTAGCACTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATTCTCTCTCCTGCATCCATCCTTCCAAATGAACTTGTAGCACTTC  650

seq1  AAGGCCTGGTTAAATGCACAACATAATCTCCCCATAGGACTCCTCCATCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCTGGTTAAATGCACAACATAATCTCCCCATAGGACTCCTCCATCT  700

seq1  GCATGACAACCACCTCAGAAAACAAATCCTTATAACCCCGAACACATACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGACAACCACCTCAGAAAACAAATCCTTATAACCCCGAACACATACA  750

seq1  CTCTCTGCAGTCCTAGTTTACTTGGGAAAAATAAACTATTCCCATCACAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGCAGTCCTAGTTTACTTGGGAAAAATAAACTATTCCCATCACAC  800

seq1  CCTCATATCCAATGTCAAGAGTATTTCCTGAGAGGCCTTGGTTTTGCATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATATCCAATGTCAAGAGTATTTCCTGAGAGGCCTTGGTTTTGCATC  850

seq1  TCAGAGGTCACCAAGGGTTGTAACTTGCTCAAAGTACCCAGAATACCCCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGGTCACCAAGGGTTGTAACTTGCTCAAAGTACCCAGAATACCCCA  900

seq1  CAACCTTCTCTCTACAGCTGTGCCTGGAGACTTTTTCTCTACCTCAGCCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTTCTCTCTACAGCTGTGCCTGGAGACTTTTTCTCTACCTCAGCCC  950

seq1  CAAAAGACCTGAGCTGCTCTGCAAATCCACCCGTCAGAGCAGAGCCAAGC  1000
      | |||||||||||||||||||||||| ||||||||||||||||||  |||
seq2  C-AAAGACCTGAGCTGCTCTGCAAAT-CACCCGTCAGAGCAGAGC--AGC  996

seq1  ACAGCTTAGGTCCCAGGTTAGACACAGGCCCCTGCAGTCTCATGACACTA  1050
      ||||||   |||||||  ||||| |||  |||||||||||||||||||||
seq2  ACAGCT--AGTCCCAG--TAGAC-CAG--CCCTGCAGTCTCATGACACTA  1039

seq1  TAGCAGTGTTCCACACAGGACCATAAAGGACACTGAACACCCACTGTAAA  1100
      ||||| || |||||||||   |||||  |||||||   || ||||||  |
seq2  TAGCAATG-TCCACACAG--ACATAA--GACACTG---ACTCACTGT--A  1079

seq1  AAGACCTTCTTCTCCAGTCTCAGGCTTCAACCAAGGGAACACGTCCTCTT  1150
      |||||  |||||| |||||||||   |||  ||   |||| ||| |||||
seq2  AAGAC--TCTTCT-CAGTCTCAG--CTCA--CA---GAAC-CGT-CTCTT  1117

seq1  TCCTCATAAGCATGCCCACTGCAGTGGCCTCAGTCTCACAGGAGGCAGGC  1200
        ||| |||||||| |||||||| ||    ||||||  || |||      
seq2  --CTC-TAAGCATG-CCACTGCA-TG---CCAGTCT--CATGAG------  1151

seq1  ACACTCCCAGCCAGGGGCCCAACTCACTTGTTGCACATCAGCAG  1244
                 |||                     |||||||||
seq2  -----------CAG---------------------CATCAGCAG  1163