BAC Information

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BAC

Clone NameB6Ng01-111L11
Chromosome6 (Build37)
Map Location 137,327,496 - 137,473,846
singlet/doubletdoublet
Overlap genePtpro, Eps8
Upstream geneLOC545887, E330021D16Rik, EG627022, LOC100043893, Atf7ip, 1100001H23Rik, LOC100043894, Gucy2c, Hist4h4, H2afj, Wbp11, BC049715, C030030A07Rik, Art4, Mgp, Erp27, Arhgdib, Pde6h, Rerg
Downstream geneStrap, Dera, 9830102E05Rik, Mgst1, Lmo3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-111L11.bB6Ng01-111L11.g
ACCDH917988DH917989
length1,1221,083
definitionDH917988|Mus musculus domesticus DNA, BAC clone: B6Ng01-111L11, 5' end.DH917989|Mus musculus domesticus DNA, BAC clone: B6Ng01-111L11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(137,327,496 - 137,328,637)(137,472,748 - 137,473,846)
sequence
gaattctgtgtaggattcccactcatttctgcactaaataactaatccac
cttgcgtcaacactgactactttgtgtacacttttcatattctgttctgg
caaggacaccttggtgaccactctttccaacctggatgttgtcctaactc
taagacgagaaagtaaagaccaatgagacagggaatctgtcctcagaaat
ggtgtcaccttacacaaaaggcaacacagaaggcagaatgaggtccatgt
cacatgacaacctctgcacaagggacgcagaggtggatttttttttcctc
aaaggtcacagagaaggctctctgaggagctgcttcaggcagagaatgtg
caggctgccttcacgacttgctatctccagagaaaatgcatttctatgac
ccatagttcctgtgtattcatacctctcatttcagagatgggaaatgaat
tcatacttccatgactagaatctgcatctgtaagagccacctggtagtaa
gccgtgccggtccagccttagcacatacagtgtgtgttctgatagccata
aactttttttttaagtttttagaaaatgatttttaagctacccagggata
gggacacatattttcttaatgtgggattgtggtaagaccaggaatgtttg
aatcactgtacgtgagaagaagttaaattaccacattaacacatacagta
taaaaagttactacccgtgaagtgtgactggtgagaagctaagagataga
agtaaatatatgtatactatacaaaatgttagaagcttagatatggttgg
cttagaaattgttcctcctaatactttctctacggctgcctaaatggctc
agctggtggaggtatttaccaccaagcctagtcaccccagttcggtctcc
aggactcacatggtagaaggtcagatccaactgtttcacgttatcttcag
atctccatatatacatgctgaggcatgtgggtacacacactcgcgcacca
caacatacacacaacaacaccaaacacaacatgcatgccgcactcactca
actcaaataattaaagggtttttctgtcttaagaatcaatagatgcacta
taattgggttggaccagagtaa
gaattccagggatcgaactcaggtcctgaggcttagcagcaagtgtcctc
aaccacggaggcgtcttgttggcccagttcagagacttacaaaccaatga
aaaatactgagtcaaaaggcatttaaattttgtgtttgtatccctgcttt
taagtctgacttaaatgtgagttactgtcctgagtaaaggttccagacgt
cagcctctgcgttatggaatgaagggctttccttctctaggggaccgtga
ccatgatgcctccacatgaatttcctggacaatgctctgtactcaccata
gctcagaccactaaaaatgaggaaagccactcaccctggccagtgccaca
tttcttttcatgaggtgtgcattccttgctaatttaaaaatgcaagtgcc
ttgatactgtgatttgtaactagtctgtgtgcagaacatcttgcgataac
agtttttgagtgtaactttttatcatgggatgctacatggtgcgtttgcc
tcctttagcgatggcaacatttttcatagaagttcaaggttctagacacc
tccagttttaatcttctatataatagaggactttggccttagttgaccat
ctggaatgtgttgggctagactgttctaaggatgcactgtactggggtcc
attgcagtgttacctcaccctgaacatgatgcaggccaggctacttctcc
tagttcccctcagagaattaactagaaaggagactaaacaaagggctggg
gagactgttcggtggatgaactgcagttgaaatccccagaacctatgtca
agccagctgtgatggtacgtatctatcatcctcacacagctccagagaga
tggaatgcagagacaggagaatttctcagagctccagaccagctggacca
gctttatgtagggtaatcagcaaagggccttgcctccggcagtgaaagtg
aaaacatcacctgagttgtctctgacttctttatgtattcagtgtcatat
atgggcgtcacatgtgtgcttgtgtgtgtcgtgtgccgtgtgcactttct
ccaactccatgatctgagtctccatcaggtttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_137327496_137328637
seq2: B6Ng01-111L11.b_45_1166

seq1  GAATTCTGTGTAGGATTCCCACTCATTTCAGCACTAAATAACTAATCCAC  50
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GAATTCTGTGTAGGATTCCCACTCATTTCTGCACTAAATAACTAATCCAC  50

seq1  CTTGCGTCAACACTGACTACTTTGTGTACACTTTTCATATTCTGTTCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCGTCAACACTGACTACTTTGTGTACACTTTTCATATTCTGTTCTGG  100

seq1  CAAGGACACCTTGGTGACCACTCTTTCCAACCTGGATGTTGTCCTAACTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGACACCTTGGTGACCACTCTTTCCAACCTGGATGTTGTCCTAACTC  150

seq1  TAAGACGAGAAAGTAAAGACCAATGAGACAGGGAATCTGTCCTCAGAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACGAGAAAGTAAAGACCAATGAGACAGGGAATCTGTCCTCAGAAAT  200

seq1  GGTGTCACCTTACACAAAAGGCAACACAGAAGGCAGAATGAGGTCCATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTCACCTTACACAAAAGGCAACACAGAAGGCAGAATGAGGTCCATGT  250

seq1  CACATGACAACCTCTGCACAAGGGACGCAGAGGTGGATTTTTTTTTCCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGACAACCTCTGCACAAGGGACGCAGAGGTGGATTTTTTTTTCCTC  300

seq1  AAAGGTCACAGAGAAGGCTCTCTGAGGAGCTGCTTCAGGCAGAGAATGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTCACAGAGAAGGCTCTCTGAGGAGCTGCTTCAGGCAGAGAATGTG  350

seq1  CAGGCTGCCTTCACGACTTGCTATCTCCAGAGAAAATGCATTTCTATGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTGCCTTCACGACTTGCTATCTCCAGAGAAAATGCATTTCTATGAC  400

seq1  CCATAGTTCCTGTGTATTCATACCTCTCATTTCAGAGATGGGAAATGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGTTCCTGTGTATTCATACCTCTCATTTCAGAGATGGGAAATGAAT  450

seq1  TCATACTTCCATGACTAGAATCTGCATCTGTAAGAGCCACCTGGTAGTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACTTCCATGACTAGAATCTGCATCTGTAAGAGCCACCTGGTAGTAA  500

seq1  GCCGTGCCGGTCCAGCCTTAGCACATACAGTGTGTGTTCTGATAGCCATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGTGCCGGTCCAGCCTTAGCACATACAGTGTGTGTTCTGATAGCCATA  550

seq1  AACTTTTTTTTTAAGTTTTTAGAAAATGATTTTTAAGCTACCCAGGGATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTTTTTTTAAGTTTTTAGAAAATGATTTTTAAGCTACCCAGGGATA  600

seq1  GGGACACATATTTTCTTAATGTGGGATTGTGGTAAGACCAGGAATGTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACACATATTTTCTTAATGTGGGATTGTGGTAAGACCAGGAATGTTTG  650

seq1  AATCACTGTACGTGAGAAGAAGTTAAATTACCACATTAACACATACAGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACTGTACGTGAGAAGAAGTTAAATTACCACATTAACACATACAGTA  700

seq1  TAAAAAGTTACTACCCGTGAAGTGTGACTGGTGAGAAGCTAAGAGATAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGTTACTACCCGTGAAGTGTGACTGGTGAGAAGCTAAGAGATAGA  750

seq1  AGTAAATATATGTATACTATACAAAATGTTAGAAGCTTAGATATGGTTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAATATATGTATACTATACAAAATGTTAGAAGCTTAGATATGGTTGG  800

seq1  CTTAGAAATTGTTCCTCCTAATACTTTCTCTACGGCTGCCTAAATGGCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAAATTGTTCCTCCTAATACTTTCTCTACGGCTGCCTAAATGGCTC  850

seq1  AGCTGGTGGAGGTATTTACCACCAAGCCTAGTCACCCCAGTTCGGTCTCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGTGGAGGTATTTACCACCAAGCCTAGTCACCCCAGTTCGGTCTCC  900

seq1  AGGACTCACATGGTAGAAGGTCAGATCCAACTGTTTCACGTTATCTTCAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTCACATGGTAGAAGGTCAGATCCAACTGTTTCACGTTATCTTCAG  950

seq1  ATCTCCATATATAACATGCTGAGGCATGTGGGTACACACACTCGCGCACA  1000
      |||||||||||| |||||||||||||||||||||||||||||||||||| 
seq2  ATCTCCATATAT-ACATGCTGAGGCATGTGGGTACACACACTCGCGCAC-  998

seq1  CACACACACACACACACACACACACACACACACACATGCATGCACGCACT  1050
      |||| ||| |||||||   |||| || ||||| |||||||||| ||||||
seq2  CACA-ACATACACACAACAACAC-CAAACACA-ACATGCATGC-CGCACT  1044

seq1  CACTCACACTCACAATAAATTAAAGGGTTTTTTCCTGTCTATAAGAAGTC  1100
      |||||| ||||| ||| |||||||||||||||  |||||| |||||| ||
seq2  CACTCA-ACTCA-AAT-AATTAAAGGGTTTTT--CTGTCT-TAAGAA-TC  1087

seq1  AAATTAAGATGCACCTGATAATTGTGTTGGACTCATGAGTAA  1142
      ||    ||||||||   ||||||| ||||||| || ||||||
seq2  AA---TAGATGCAC--TATAATTGGGTTGGAC-CA-GAGTAA  1122

seq1: chr6_137472748_137473846
seq2: B6Ng01-111L11.g_68_1150 (reverse)

seq1  AAAAACTGATGGGAGACCTCAAGATCATGGAGTGTGAGAGAAAGTGCACA  50
      |||| ||||| ||||| ||| |||||||||||| || |||||||||||||
seq2  AAAACCTGAT-GGAGA-CTC-AGATCATGGAGT-TG-GAGAAAGTGCACA  45

seq1  CGTGCACACGGACACACACAAGCACACATGTGACCGCCCATATATGAACA  100
      || |||||| ||||||||||||||||||||||| |||||||||||| |||
seq2  CG-GCACAC-GACACACACAAGCACACATGTGA-CGCCCATATATG-ACA  91

seq1  CTGATTACATAAAAGGAAGTCAGAGGACAACCTCAGGTGATGTTTTCCAC  150
      |||| ||||||||  ||||||||| ||||| ||||||||||||||||   
seq2  CTGAATACATAAA--GAAGTCAGA-GACAA-CTCAGGTGATGTTTTC--A  135

seq1  CTTTCACCTTGCCGGAGGCAAGGCCCTTTGCTGATTACCCCTACAT-AAG  199
      |||||||  |||||||||||||||||||||||||||| |||||||| |||
seq2  CTTTCAC--TGCCGGAGGCAAGGCCCTTTGCTGATTA-CCCTACATAAAG  182

seq1  CTGGTCCAGCTGGTCTGGAGCTCTGAGAAATTCTCCTGTCTCTGCATTCC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCCAGCTGGTCTGGAGCTCTGAGAAATTCTCCTGTCTCTGCATTCC  232

seq1  ATCTCTCTGGAGCTGTGTGAGGATGATAGATACGTACCATCACAGCTGGC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTCTGGAGCTGTGTGAGGATGATAGATACGTACCATCACAGCTGGC  282

seq1  TTGACATAGGTTCTGGGGATTTCAACTGCAGTTCATCCACCGAACAGTCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACATAGGTTCTGGGGATTTCAACTGCAGTTCATCCACCGAACAGTCT  332

seq1  CCCCAGCCC-TTGTTTAGTCTCCTTTCTAGTTAATTCTCTGAGGGGAACT  398
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGCCCTTTGTTTAGTCTCCTTTCTAGTTAATTCTCTGAGGGGAACT  382

seq1  AGGAGAAGTAGCCTGGCCTGCATCATGTTCAGGGTGAGGTAACACTGCAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAAGTAGCCTGGCCTGCATCATGTTCAGGGTGAGGTAACACTGCAA  432

seq1  TGGACCCCAGTACAGTGCATCCTTAGAACAGTCTAGCCCAACACATTCCA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACCCCAGTACAGTGCATCCTTAGAACAGTCTAGCCCAACACATTCCA  482

seq1  GATGGTCAACTAAGGCCAAAGTCCTCTATTATATAGAAGATTAAAACTGG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTCAACTAAGGCCAAAGTCCTCTATTATATAGAAGATTAAAACTGG  532

seq1  AGGTGTCTAGAACCTTGAACTTCTATGAAAAATGTTGCCATCGCTAAAGG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTCTAGAACCTTGAACTTCTATGAAAAATGTTGCCATCGCTAAAGG  582

seq1  AGGCAAACGCACCATGTAGCATCCCATGATAAAAAGTTACACTCAAAAAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAACGCACCATGTAGCATCCCATGATAAAAAGTTACACTCAAAAAC  632

seq1  TGTTATCGCAAGATGTTCTGCACACAGACTAGTTACAAATCACAGTATCA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATCGCAAGATGTTCTGCACACAGACTAGTTACAAATCACAGTATCA  682

seq1  AGGCACTTGCATTTTTAAATTAGCAAGGAATGCACACCTCATGAAAAGAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACTTGCATTTTTAAATTAGCAAGGAATGCACACCTCATGAAAAGAA  732

seq1  ATGTGGCACTGGCCAGGGTGAGTGGCTTTCCTCATTTTTAGTGGTCTGAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGCACTGGCCAGGGTGAGTGGCTTTCCTCATTTTTAGTGGTCTGAG  782

seq1  CTATGGTGAGTACAGAGCATTGTCCAGGAAATTCATGTGGAGGCATCATG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGGTGAGTACAGAGCATTGTCCAGGAAATTCATGTGGAGGCATCATG  832

seq1  GTCACGGTCCCCTAGAGAAGGAAAGCCCTTCATTCCATAACGCAGAGGCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACGGTCCCCTAGAGAAGGAAAGCCCTTCATTCCATAACGCAGAGGCT  882

seq1  GACGTCTGGAACCTTTACTCAGGACAGTAACTCACATTTAAGTCAGACTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGTCTGGAACCTTTACTCAGGACAGTAACTCACATTTAAGTCAGACTT  932

seq1  AAAAGCAGGGATACAAACACAAAATTTAAATGCCTTTTGACTCAGTATTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCAGGGATACAAACACAAAATTTAAATGCCTTTTGACTCAGTATTT  982

seq1  TTCATTGGTTTGTAAGTCTCTGAACTGGGCCAACAAGACGCCTCCGTGGT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTGGTTTGTAAGTCTCTGAACTGGGCCAACAAGACGCCTCCGTGGT  1032

seq1  TGAGGACACTTGCTGCTAAGCCTCAGGACCTGAGTTCGATCCCTGGAATT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGACACTTGCTGCTAAGCCTCAGGACCTGAGTTCGATCCCTGGAATT  1082

seq1  C  1099
      |
seq2  C  1083