BAC Information

Click to search

BAC

Clone NameB6Ng01-112A19
Chromosome3 (Build37)6 (Build37)
Map Location 41,059,187 - 41,059,7375,733,753 - 5,734,932
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-112A19.bB6Ng01-112A19.g
ACCDH918224DH918225
length9501,173
definitionDH918224|Mus musculus domesticus DNA, BAC clone: B6Ng01-112A19, 5' end.DH918225|Mus musculus domesticus DNA, BAC clone: B6Ng01-112A19, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,059,187 - 41,059,737)(5,733,753 - 5,734,932)
sequence
gaattctttgtttagctctgagccccatttttttaatgggttatttgatt
ttctggagtccaccttcttgaattctttatatatattggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggcct
ttttgtcttattgacggtgtcttttgccttgcaaaagctttgcaatttta
tgaagtcccatttgtcaattctcgatcttacagcacaagccatttctgtt
ctattcaggaatttttcccctgtacccatatcttcaaggcttttccctac
tttctccgttataagtttcactgtctctggttttatgtggagatccttaa
tccacttagatttgaccttagtacaaggagatagaaatggatcaattcgc
aatcttctacatgataacagccagttgtgctagcaccatttgttgaaaat
gttgtcttttttccactggatgatttttgctcccttgtcaaagagcaagt
gaccataggtgtatgctttcatttctgggtcttcaattctattccattgg
tctactcgtctgtcactataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttatgtcaggcatggtgattccaccagaagttcttt
tatccttgagaagagtttttgctatcctaggttttttgttattccagatg
aatttgcagattgccctttctaattcattgaagaattgagttggaatttt
gatggggattgcatcgaatctgtagattgcttttggcaagatggccattt
ttactatattgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttaatttctttcttcagagacttgaagttcttatcata
cggtctttcacttccttagttagagtcatgccaaggtattttatattatt

gaattctcttaacaaatgaaaaagaatgaccacaaacaggacacaacatt
ttaatactgatcccagacacaattagttgttagtaagaggggaacttggt
taggataaagccacatgtatccccaattccggactttatgtgggacactt
ctgagtgaagggatgggctttggtttataattttcttttggatcagtgtc
actttgcactgataggagttatcacggggtgggcaaaagtcatctttttg
tggtgttgtccacaaagagagactttagcccaagctgtagaaggaaaact
aatggaagaaaagaaacttatcaaacaggaagtctcaacaaaggagagaa
agccagagcaacaatagctctagcatcttaatacaaccatagcaaagaaa
tcataggaggaggaacaaaagagcagacatatacccaagttctgagtctg
actgcagctggagcactgaggggtctgtgtcccactgcagggtcctaatc
gtgcagcacaaaggaaaaagaacacagagaattaacaaagagggagggca
acagaacaaactaaaccgtgtcattcttcaaggcaacgtcatatacggta
cacacacagaacagcccctccacccccagggattaggacaaagaaggtta
ggaatagctgcttaacatcaaaaactatggccatttccatggaagacagc
ctacagccaattattccagtgccacgcacgcacgcacgcacacactcacg
tgtgcatgcacacacattcgtgctccagattcattgactgaatatgtgat
cctgatgtacttttgacctcggagcccaaacacatgttggagttctgagc
tcttccatggagtggagagaattaaatacagatggacaaggacggtagca
tctgcgaaagtcagccttaatggagtgtgactgtaaagtctggggaacag
ttggcgccctccggtcagttacgacaaaaatagcagcattgcatttgaaa
ccgatgagttcttttatcatacagactgtagggaaatggtcttcagtgct
aacatttgtctctgagaatgcagagaataagtacgttcttacattttctt
gtttggtaaccacaagcacagaagtcgtgaatgcattaattttctttgta
ctaataagatggatagtattcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059187_41059737
seq2: B6Ng01-112A19.b_45_596 (reverse)

seq1  AGACCAATGGAATAGAATTGAAGACTCAGAAACGAATCCACACACCTATG  50
      ||||||||||||||||||||||||| |||||| |||  || |||||||||
seq2  AGACCAATGGAATAGAATTGAAGACCCAGAAATGAAAGCATACACCTATG  50

seq1  GTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGTGGAAAAAAGAC  100
      |||||||| |||| ||||||||||| |||| |||||||||||||||||||
seq2  GTCACTTGCTCTTTGACAAGGGAGCAAAAATCATCCAGTGGAAAAAAGAC  100

seq1  AGCATTTTCAACAAATGGTGCTGGCACAACTGGTTGTTATCATGTAGAAG  150
      | |||||||||||||||||||| |||||||||| ||||||||||||||||
seq2  AACATTTTCAACAAATGGTGCTAGCACAACTGGCTGTTATCATGTAGAAG  150

seq1  AATGCGAATTGATCCACTCCTATCTCCTTGTACTAAGGTCAAATCTAAGT  200
      | |||||||||||||| | |||||||||||||||||||||||||||||||
seq2  ATTGCGAATTGATCCATTTCTATCTCCTTGTACTAAGGTCAAATCTAAGT  200

seq1  GGATCAAGGAACGCCACATAAAACCAGAGACACTGAAACTTATAGAGGAG  250
      |||| ||||| | ||||||||||||||||||| |||||||||||  ||||
seq2  GGATTAAGGATCTCCACATAAAACCAGAGACAGTGAAACTTATAACGGAG  250

seq1  AAAGTGGGGAAAAGCCTTGAAGATATGGTCACAGGGGAAAAATTCCTGCA  300
      ||||| ||||||||||||||||||||||  |||||||||||||||||| |
seq2  AAAGTAGGGAAAAGCCTTGAAGATATGGGTACAGGGGAAAAATTCCTGAA  300

seq1  TAGAACAGCAATGGCTTGTGCTGTAAGATTGAGAATAGACAAATGGGACC  350
      |||||||| |||||||||||||||||||| |||||| |||||||||||| 
seq2  TAGAACAGAAATGGCTTGTGCTGTAAGATCGAGAATTGACAAATGGGACT  350

seq1  TCATGAAACTGCAAAGCTTCTGCAAGGCAAAAGACACCGTCAATAAGACA  400
      |||| ||| |||||||||| ||||||||||||||||||||||||||||||
seq2  TCATAAAATTGCAAAGCTTTTGCAAGGCAAAAGACACCGTCAATAAGACA  400

seq1  AAAAGG-CACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGA  449
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGCCACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGA  450

seq1  TAGGGGACTAATATCCAATATATATCAAGAACTCAAGAAGGTGGATTCCA  499
      ||||||||||||||||||||||||| ||||| ||||||||||||| ||||
seq2  TAGGGGACTAATATCCAATATATATAAAGAATTCAAGAAGGTGGACTCCA  500

seq1  GAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAGCTAAACAAAGAA  549
      ||||||||||||||||  | ||||||||||||||||||||||||||||||
seq2  GAAAATCAAATAACCCATTAAAAAAATGGGGCTCAGAGCTAAACAAAGAA  550

seq1  TT  551
      ||
seq2  TT  552

seq1: chr6_5733753_5734932
seq2: B6Ng01-112A19.g_65_1237 (reverse)

seq1  TAGAATACTTATCCCATCTTATTAGTACAAAGGGAAATTAGATGCCATTA  50
      |||||||| ||| |||||||||||||||||| | |||||| ||| |||| 
seq2  TAGAATAC-TAT-CCATCTTATTAGTACAAA-GAAAATTA-ATG-CATTC  45

seq1  CCGACATCCTGTGCTATGT-GTTACAAAACATAGAAAATGTAAG-ACGTA  98
       |||| | ||||||| ||| ||||| ||||| |||||||||||| |||||
seq2  ACGAC-TTCTGTGCT-TGTGGTTACCAAACA-AGAAAATGTAAGAACGTA  92

seq1  CTTAATCTCTGGCATCTCAGAGACAAATGTTAGCACTGGAGACCATTTCC  148
      |||| ||||||   |||||||||||||||||||||||| |||||||||||
seq2  CTTATTCTCTGCATTCTCAGAGACAAATGTTAGCACTGAAGACCATTTCC  142

seq1  CTACAGTCTGTATGGATAAAAGAACTCATCGGTTTCAAATGCAATGCTGC  198
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CTACAGTCTGTAT-GATAAAAGAACTCATCGGTTTCAAATGCAATGCTGC  191

seq1  TATTTTTGTCGTAACTGACCGGAGGGCGCCAACTGTTCCCCAGACTTTAC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTGTCGTAACTGACCGGAGGGCGCCAACTGTTCCCCAGACTTTAC  241

seq1  AGTCACACTCCATTAAGGCTGACTTTCGCAGATGCTACCGTCCTTGTCCA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACACTCCATTAAGGCTGACTTTCGCAGATGCTACCGTCCTTGTCCA  291

seq1  TCTGTATTTAATTCTCTCCACTCCATGGAAGAGCTCAGAACTCCAACATG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTATTTAATTCTCTCCACTCCATGGAAGAGCTCAGAACTCCAACATG  341

seq1  TGTTTGGGCTCCGAGGTCAAAAGTACATCAGGATCACATATTCAGTCAAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGGGCTCCGAGGTCAAAAGTACATCAGGATCACATATTCAGTCAAT  391

seq1  GAATCTGGAGCACGAATGTGTGTGCATGCACACGTGAGTGTGTGCGTGCG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTGGAGCACGAATGTGTGTGCATGCACACGTGAGTGTGTGCGTGCG  441

seq1  TGCGTGCGTGGCACTGGAATAATTGGCTGTAGGCTGTCTTCCATGGAAAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTGCGTGGCACTGGAATAATTGGCTGTAGGCTGTCTTCCATGGAAAT  491

seq1  GGCCATAGTTTTTGATGTTAAGCAGCTATTCCTAACCTTCTTTGTCCTAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATAGTTTTTGATGTTAAGCAGCTATTCCTAACCTTCTTTGTCCTAA  541

seq1  TCCCTGGGGGTGGAGGGGCTGTTCTGTGTGTGTACCGTATATGACGTTGC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGGGGGTGGAGGGGCTGTTCTGTGTGTGTACCGTATATGACGTTGC  591

seq1  CTTGAAGAATGACACGGTTTAGTTTGTTCTGTTGCCCTCCCTCTTTGTTA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAGAATGACACGGTTTAGTTTGTTCTGTTGCCCTCCCTCTTTGTTA  641

seq1  ATTCTCTGTGTTCTTTTTCCTTTGTGCTGCACGATTAGGACCCTGCAGTG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCTGTGTTCTTTTTCCTTTGTGCTGCACGATTAGGACCCTGCAGTG  691

seq1  GGACACAGACCCCTCAGTGCTCCAGCTGCAGTCAGACTCAGAACTTGGGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACAGACCCCTCAGTGCTCCAGCTGCAGTCAGACTCAGAACTTGGGT  741

seq1  ATATGTCTGCTCTTTTGTTCCTCCTCCTATGATTTCTTTGCTATGGTTGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTCTGCTCTTTTGTTCCTCCTCCTATGATTTCTTTGCTATGGTTGT  791

seq1  ATTAAGATGCTAGAGCTATTGTTGCTCTGGCTTTCTCTCCTTTGTTGAGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGATGCTAGAGCTATTGTTGCTCTGGCTTTCTCTCCTTTGTTGAGA  841

seq1  CTTCCTGTTTGATAAGTTTCTTTTCTTCCATTAGTTTTCCTTCTACAGCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTGTTTGATAAGTTTCTTTTCTTCCATTAGTTTTCCTTCTACAGCT  891

seq1  TGGGCTAAAGTCTCTCTTTGTGGACAACACCACAAAAAGATGACTTTTGC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTAAAGTCTCTCTTTGTGGACAACACCACAAAAAGATGACTTTTGC  941

seq1  CCACCCCGTGATAACTCCTATCAGTGCAAAGTGACACTGATCCAAAAGAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCCGTGATAACTCCTATCAGTGCAAAGTGACACTGATCCAAAAGAA  991

seq1  AATTATAAACCAAAGCCCATCCCTTCACTCAGAAGTGTCCCACATAAAGT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATAAACCAAAGCCCATCCCTTCACTCAGAAGTGTCCCACATAAAGT  1041

seq1  CCGGAATTGGGGATACATGTGGCTTTATCCTAACCAAGTTCCCCTCTTAC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGAATTGGGGATACATGTGGCTTTATCCTAACCAAGTTCCCCTCTTAC  1091

seq1  TAACAACTAATTGTGTCTGGGATCAGTATTAAAATGTTGTGTCCTGTTTG  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAACTAATTGTGTCTGGGATCAGTATTAAAATGTTGTGTCCTGTTTG  1141

seq1  TGGTCATTCTTTTTCATTTGTTAAGAGAATTC  1180
      ||||||||||||||||||||||||||||||||
seq2  TGGTCATTCTTTTTCATTTGTTAAGAGAATTC  1173