BAC Information

Click to search

BAC

Clone NameB6Ng01-112C18
Chromosome6 (Build37)
Map Location 16,358,452 - 16,359,506
singlet/doubletsinglet
Overlap genenone
Upstream geneFoxp2, Mdfic, LOC100041116
Downstream geneTcfec, EG435881, Tes, EG232599, Cav2, Cav1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-112C18.bB6Ng01-112C18.g
ACCDH918310DH918311
length1,2331,104
definitionDH918310|Mus musculus domesticus DNA, BAC clone: B6Ng01-112C18, 5' end.DH918311|Mus musculus domesticus DNA, BAC clone: B6Ng01-112C18, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaaatatcactttttgcagatgatatgatagtatatatcagtga
ccataaaaattccaccagagaactcctaaaactgataaacagcttcagtg
aagtagcaggatgtaaaattaactcaaacaagtcaatggcctttctctac
acaaagaataaacaggctgagaaagatattagggaaacaacacccttctc
aatagtcacaaataatataaaatatcttggagtgattctaactaaggaag
tgaaagatccgtatgataaaaacttcaagttcctgaagaaagaaattaaa
gaagatctcagaagatggaaagatctcccatgcttatggattggcaggat
caacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatg
caatccccatcaaaattccaactcaattcttcaaggaattagaaagggca
atctgcaaattcatctggaacaacaaaaaacctaggatagcaaaaattct
tctcaaggataaaagaacctctggtggaatcaccatgcctgacctaaagc
tgtactacagaacaattgtgataaaaactgcatggtacatgtataacgac
agacaagtagaccaatggaacagaattgaagaccctgagatgaacccaca
cacctatggtcacttgatctttgacaagggagcaaaaaccatcagtggaa
aaaagacagcattttcaacaaatggtgctggcacaactggcgtttatcat
gtagaagaatgtgaattgatgcattcctatcgccttgtactaaggtcaaa
tctaagtggattaaggaactccacataaaaccagagacactgaaacttat
agaagagaaagtatggaaaagccttgaagatatgggtacaggggaaaaat
tcctgaatagaacagcaatggcttgtgctgtaagatcgagaatcgataat
gggactcataaagtgcaaggctctgcaaggcaaagacaccgtcataggac
aaaagacaccacagatggtgaaaggatctttacctatctatatcagatag
gggactatatccagtatatataaggactcagaagtggacccagaaaatca
aataaccccataaattggggctcgaactgaaaaggaaattccacctgagg
aaatcgaatgaagaagctggaaggttccaatctatcttgagtgatgccac
tctaagaaccgtgagaatacacgtcagacacgt
gaattctctaggaagtcctagagacttggaatggatgaggctcctgggag
tcaataagtgtgatcctagccaagattccaagtggtggtgacatagaacg
aaaggagttctccttttgtagctgggcagtaactccagtgaagtgataaa
gacaccaacgcacccagaaaacttttggcccaaaatgtatcttgtctaaa
tgaaatgcaggaacaaagatcatatagagactgtaggaatggccaaccaa
taactacctcatcttgagacccatctcatgggcatgtaacaatacatacc
atgtatacccttttgggtctgagttaccttacttgtgttgatattttcta
gttctatccatttttctacaaaattccttatgtccttgtttttaatagct
gaatagtattctattttgaaaatgaaccacattttctgtatccattcttc
agtgtaaggacatctaggttgtttctagtttctggctattacaaataaag
caatgaatatagtgagaaaaaaaaagaaaagaagtcaggaacttgcaaag
tcaaatacaaacatgaagcagagaaagcactagaaagcattagaaggact
gtgaactataaaatctcaaatttgcaataaatctccttccaaatatgccc
tgaaaattaaaacacaacatagttaatatgaatacatgctgtgcgcctag
attgggcagatctaccactcctctaccatcttctttatctacgagacccc
ttagaacttgcggtttctccaggccatgtgcttctgctctgcttttcctc
ttcttcctccttctctgcatcctctccctcttccattttctcctttcttc
tctctctctgaccttctgctccaccttctcttttatctgcccaatcatca
gctttgctttattttacaaattaagttgggaagcagtttaaggaaatcac
ctgagtgctgactcagtccttgttcacaccactcactggagaaaggatta
acaccaatatattagccccaggctatccacacattacaaataagcatgac
atcatggagaaaaaataaaagaagcagaacttgcaagccaatacaacatg
aaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_16358452_16359506
seq2: B6Ng01-112C18.g_130_1170 (reverse)

seq1  GTTTCATGTTTGTATTTGGCTTTGCAAGTTCTTGCCTTCTTTTATTTTTT  50
      |||||||| ||||| ||||| |||||||||||   |||||||||||||||
seq2  GTTTCATG-TTGTA-TTGGC-TTGCAAGTTCT--GCTTCTTTTATTTTTT  45

seq1  CT-CATGATGTTCATTGCTTTATTTGTAATTGTTGTGGATAGCCCTGGGG  99
      || ||||||| ||| ||| |||||||||||   ||||||||| |||||||
seq2  CTCCATGATG-TCA-TGC-TTATTTGTAAT--GTGTGGATAG-CCTGGGG  89

seq1  CTAATTATATTTGGTGTTAATTCCTTTCTCCAGTGAGTGGTTGTGAACAA  149
      |||| |||| |||||||||| ||||||||||||||||||| |||||||||
seq2  CTAA-TATA-TTGGTGTTAA-TCCTTTCTCCAGTGAGTGG-TGTGAACAA  135

seq1  GGACTGAGTCAGCACTCAGGTGATTTCCTTAAACCTGCTTCCCAACTTAA  199
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GGACTGAGTCAGCACTCAGGTGATTTCCTTAAA-CTGCTTCCCAACTTAA  184

seq1  TTTGTAAAATAAAGCAAAGCTGATGATTGGGCAGATAAAAGAGAAGGTGG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAAAATAAAGCAAAGCTGATGATTGGGCAGATAAAAGAGAAGGTGG  234

seq1  AGCAGAAGGTCAGAGAGAGAGAAG-AAGGAGAAAATGGAAGAGGGAGAGG  298
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AGCAGAAGGTCAGAGAGAGAGAAGAAAGGAGAAAATGGAAGAGGGAGAGG  284

seq1  ATGCAGAGAAGGAGGAAGAAGAGGAAAAGCAGAGCAGAAGCACATGGCCT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGAGAAGGAGGAAGAAGAGGAAAAGCAGAGCAGAAGCACATGGCCT  334

seq1  GGAGAAACCGCAAGTTCTAAGGGGTCTCGTAGATAAAGAAGATGGTAGAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAACCGCAAGTTCTAAGGGGTCTCGTAGATAAAGAAGATGGTAGAG  384

seq1  GAGTGGTAGATCTGCCCAATCTAGGCGCACAGCATGTATTCATATTAACT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGTAGATCTGCCCAATCTAGGCGCACAGCATGTATTCATATTAACT  434

seq1  ATGTTGTGTTTTAATTTTCAGGGCATATTTGGAAGGAGATTTATTGCAAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGTGTTTTAATTTTCAGGGCATATTTGGAAGGAGATTTATTGCAAA  484

seq1  TTTGAGATTTTATAGTTCACAGTCCTTCTAATGCTTTCTAGTGCTTTCTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGATTTTATAGTTCACAGTCCTTCTAATGCTTTCTAGTGCTTTCTC  534

seq1  TGCTTCATGTTTGTATTTGACTTTGCAAGTTCCTGACTTCTTTTCTTTTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCATGTTTGTATTTGACTTTGCAAGTTCCTGACTTCTTTTCTTTTT  584

seq1  TTTTCTCACTATATTCATTGCTTTATTTGTAATAGCCAGAAACTAGAAAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCACTATATTCATTGCTTTATTTGTAATAGCCAGAAACTAGAAAC  634

seq1  AACCTAGATGTCCTTACACTGAAGAATGGATACAGAAAATGTGGTTCATT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTAGATGTCCTTACACTGAAGAATGGATACAGAAAATGTGGTTCATT  684

seq1  TTCAAAATAGAATACTATTCAGCTATTAAAAACAAGGACATAAGGAATTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAATAGAATACTATTCAGCTATTAAAAACAAGGACATAAGGAATTT  734

seq1  TGTAGAAAAATGGATAGAACTAGAAAATATCAACACAAGTAAGGTAACTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAAAAATGGATAGAACTAGAAAATATCAACACAAGTAAGGTAACTC  784

seq1  AGACCCAAAAGGGTATACATGGTATGTATTGTTACATGCCCATGAGATGG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCAAAAGGGTATACATGGTATGTATTGTTACATGCCCATGAGATGG  834

seq1  GTCTCAAGATGAGGTAGTTATTGGTTGGCCATTCCTACAGTCTCTATATG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAAGATGAGGTAGTTATTGGTTGGCCATTCCTACAGTCTCTATATG  884

seq1  ATCTTTGTTCCTGCATTTCATTTAGACAAGATACATTTTGGGCCAAAAGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTGTTCCTGCATTTCATTTAGACAAGATACATTTTGGGCCAAAAGT  934

seq1  TTTCTGGGTGCGTTGGTGTCTTTATCACTTCACTGGAGTTACTGCCCAGC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGGGTGCGTTGGTGTCTTTATCACTTCACTGGAGTTACTGCCCAGC  984

seq1  TACAAAAGGAGAACTCCTTTCGTTCTATGTCACCACCACTTGGAATCTTG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAAGGAGAACTCCTTTCGTTCTATGTCACCACCACTTGGAATCTTG  1034

seq1  GCTAGGA  1055
      |||||||
seq2  GCTAGGA  1041