BAC Information

Click to search

BAC

Clone NameB6Ng01-112E15
Chromosome6 (Build37)
Map Location 38,427,534 - 38,590,789
singlet/doubletdoublet
Overlap geneD130059P03Rik, 3110054G05Rik, 1110001J03Rik, LOC621228, Luc7l2, Klrg2
Upstream geneAkr1d1, LOC665046, Ybx1-ps2, LOC100039636, LOC665102, Trim24, Svopl, Atp6v0a4, LOC100039657, D630002J15Rik, D630045J12Rik, LOC665125, Zc3hav1l, Zc3hav1, Rpl30-ps1, Ttc26
Downstream geneLOC665180, Hipk2, Tbxas1, 1700025N23Rik, Parp12, 4930599N23Rik, A630082K20Rik, Slc37a3, Rab19, Mkrn1, ENSMUSG00000068601, Dennd2a, Adck2, Ndufb2, Braf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-112E15.bB6Ng01-112E15.g
ACCDH918391DH918392
length1,0511,039
definitionDH918391|Mus musculus domesticus DNA, BAC clone: B6Ng01-112E15, 5' end.DH918392|Mus musculus domesticus DNA, BAC clone: B6Ng01-112E15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,427,534 - 38,428,590)(38,589,738 - 38,590,789)
sequence
gaattccaatcctgctgtatagtgccaaggtttagctgctctccatgacc
ctttcatgccttttaaaactagtaccatcttgttgactcttcttacatta
caaagtttggttgctaacacaagataggtttttggatataaatgcatgga
ggtgcagctttaatattttattagtaagtattctttagtctggatagagg
tgactaaactgtagttggacaattataggaactaacttggtgttgggcta
gtccctgggcattggtttctacccatacccttgaatctttgttgtataga
cgaaccatatcttttgattggggacaggactttcaggtagaagatattct
tctgacatcaggtacccttactgtcccagaaaggatcccagcagaccggt
accagatgtcatagcaggagatgccttacttaccaatactgatagaggtc
tcctcagacagatgcttgccaatttctttttgagtggcagttctaagaat
ctgccgtttggtatgtcttggggccttgaattatcttcaaggtccacacc
tcctgaggcagcagtctgctctgaatttgaattggagtcttgatctctct
ggggcctccagaagttattaaacccagctaataagagtaaaggccactga
accaaaatttttgggcattaagcaagctttattttctgtcagacaggctg
tctccctaaagtggggtttgagaaaatggtattgaacataggagaaagta
ggggtagtatagctcaaaactacaagagtggggtttccaagggttgtgtt
acctaggaactcggcagagcagctcatcagggtagagctgaaggcataac
aatacgtcagattccagagaatgggtcaagacatggtcagatttagttac
acagaaactggaaggatttatcttgaccttgtaacagatggcttctaatc
tagattgcatcaggtttgctccattcaaaataaaatagctactaaggcaa
atgccgatttacagttctcctggctccaaaaaagaagcgtgaccatcatt
t
gaattcacgtctttctctctgctccagactgtggacatgtgactgccctg
actttccctcaggaatgaaatagaactgaaactagaacaccaaagcttag
caaaggaacaggacacacagtaaaaagaaagatacacggtgtctcgtgaa
gcccagaagattgaacgaatgagcctggcgcccagccacgatcaggaacc
tcgagactggggcagtatttgcagatcttccggcagctgcttccccgatg
gttctgatacttccagctctgcctttcccacatttggagtgccagattcc
taaaaggaacacctcacttgccactgaggccgtcacaaacatgctgagtt
gaccacccaggatggcagagccctcccaggaagccagcttactaggtggg
aagagctgctagggtaaagtcccacaggctgagtgcggtcaattaccccc
tcaattctggagaccagaaattcaagatcaaggtgtctggagggccagtt
ccttaggagagcatctattctttccctttttcctggcttctcagagcttg
ctgacatccctcatgatttccttagtgtttttgtttgtttggcttctgga
tgcattatcctgatccccgccttcaagttctggcattttctctgtgcaca
ggtctctcaatgtcttctttttctagagacacaagctacattgggttagt
gtaaccttctctcaacgaattacctcctcagtgactctgtttctagctga
aggaagactttgatatataaacctgtatcgggtgggaaacatttccccct
gaaataatgaaaatggggagaagctgaagacagcagacctgagacagcag
agcctagggaaaggaggaaagccagtcagctttggtgttggggaaagtgt
gggtgagagggactctaaggcaagaaagtactcagtatgttgtgcatgtc
tgcagttccagtgctcaagtgtaggcaggagaatcaggagtttaaaggct
ctccatcgctcatctcagtttgggagactgggtgctggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_38427534_38428590
seq2: B6Ng01-112E15.b_43_1093

seq1  GAATTCCAATCCTGCTGTATAGTGCCAAGGTTTAGCTGCTCTCCATGACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAATCCTGCTGTATAGTGCCAAGGTTTAGCTGCTCTCCATGACC  50

seq1  CTTTCATGCCTTTTAAAACTAGTACCATCTTGTTGACTCTTCTTACATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCATGCCTTTTAAAACTAGTACCATCTTGTTGACTCTTCTTACATTA  100

seq1  CAAAGTTTGGTTGCTAACACAAGATAGGTTTTTGGATATAAATGCATGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTTTGGTTGCTAACACAAGATAGGTTTTTGGATATAAATGCATGGA  150

seq1  GGTGCAGCTTTAATATTTTATTAGTAAGTATTCTTTAGTCTGGATAGAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCAGCTTTAATATTTTATTAGTAAGTATTCTTTAGTCTGGATAGAGG  200

seq1  TGACTAAACTGTAGTTGGACAATTATAGGAACTAACTTGGTGTTGGGCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTAAACTGTAGTTGGACAATTATAGGAACTAACTTGGTGTTGGGCTA  250

seq1  GTCCCTGGGCATTGGTTTCTACCCATACCCTTGAATCTTTGTTGTATAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTGGGCATTGGTTTCTACCCATACCCTTGAATCTTTGTTGTATAGA  300

seq1  CGAACCATATCTTTTGATTGGGGACAGGACTTTCAGGTAGAAGATATTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAACCATATCTTTTGATTGGGGACAGGACTTTCAGGTAGAAGATATTCT  350

seq1  TCTGACATCAGGTACCCTTACTGTCCCAGAAAGGATCCCAGCAGACCGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACATCAGGTACCCTTACTGTCCCAGAAAGGATCCCAGCAGACCGGT  400

seq1  ACCAGATGTCATAGCAGGAGATGCCTTACTTACCAATACTGATAGAGGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGATGTCATAGCAGGAGATGCCTTACTTACCAATACTGATAGAGGTC  450

seq1  TCCTCAGACAGATGCTTGCCAATTTCTTTTTGAGTGGCAGTTCTAAGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAGACAGATGCTTGCCAATTTCTTTTTGAGTGGCAGTTCTAAGAAT  500

seq1  CTGCCGTTTGGTATGTCTTGGGGCCTTGAATTATCTTCAAGGTCCACACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCGTTTGGTATGTCTTGGGGCCTTGAATTATCTTCAAGGTCCACACC  550

seq1  TCCTGAGGCAGCAGTCTGCTCTGAATTTGAATTGGAGTCTTGATCTCTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAGGCAGCAGTCTGCTCTGAATTTGAATTGGAGTCTTGATCTCTCT  600

seq1  GGGGCCTCCAGAAGTTATTAAACCCAGCTAATAAGAGTAAAGGCCACTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCCTCCAGAAGTTATTAAACCCAGCTAATAAGAGTAAAGGCCACTGA  650

seq1  ACCAAAATTTTTGGGCATTAAGCAAGCTTTATTTTCTGTCAGACAGGCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAATTTTTGGGCATTAAGCAAGCTTTATTTTCTGTCAGACAGGCTG  700

seq1  TCTCCCTAAAGTGGGGTTTGAGAAAATGGTATTGAACATAGGAGAAAGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCTAAAGTGGGGTTTGAGAAAATGGTATTGAACATAGGAGAAAGTA  750

seq1  GGGGTAGTATAGCTCAAAACTACAAGAGTGGGGTTTCCAAGGGTTGTGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTAGTATAGCTCAAAACTACAAGAGTGGGGTTTCCAAGGGTTGTGTT  800

seq1  ACCTAGGAACTCGGCAGAGCAGCTCATCAGGGTAGAGCTGAAGGCATAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGGAACTCGGCAGAGCAGCTCATCAGGGTAGAGCTGAAGGCATAAC  850

seq1  AATACGTCAGATTCCAGAGAATGGGTCAAGACATGGTCAGATTTAAGTTA  900
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AATACGTCAGATTCCAGAGAATGGGTCAAGACATGGTCAGATTT-AGTTA  899

seq1  CACAGAAAACTGGAAGGAATTTATCTTGACCTTGTAACAAGATGGCTTCT  950
      ||||| ||||||||||| |||||||||||||||||||| |||||||||||
seq2  CACAG-AAACTGGAAGG-ATTTATCTTGACCTTGTAAC-AGATGGCTTCT  946

seq1  AATCTTAAGATTGCATCAGG-CTGCTCCA-TCAAAATAAAATAGCTACTA  998
      |||||  |||||||||||||  ||||||| ||||||||||||||||||||
seq2  AATCT--AGATTGCATCAGGTTTGCTCCATTCAAAATAAAATAGCTACTA  994

seq1  GGCAAAATGCAGATTTAACAGTTCTC--TGCTCCAAAAAAAGGAAGCGTG  1046
       |  |||||| ||||| |||||||||   |||||||||||  ||||||||
seq2  AGGCAAATGCCGATTT-ACAGTTCTCCTGGCTCCAAAAAA--GAAGCGTG  1041

seq1  ACCAATCATTT  1057
      ||| |||||||
seq2  ACC-ATCATTT  1051

seq1: chr6_38589738_38590789
seq2: B6Ng01-112E15.g_67_1105 (reverse)

seq1  CCCAGCAACCCAGGTTCTCCCAAACCTGGAGATGAAGCGGATGGAGATGG  50
      |||||| ||||||  ||||||||||   |||||| ||| |||||||| | 
seq2  CCCAGC-ACCCAG--TCTCCCAAAC--TGAGATG-AGC-GATGGAGA-GC  42

seq1  CTTTAAACTCCTGATTCTCCTGCCTCCACCTCTGAGCACTGGGACTGCAG  100
      ||||||||||||||||||||||||| |||   |||||||||| |||||||
seq2  CTTTAAACTCCTGATTCTCCTGCCTACAC--TTGAGCACTGGAACTGCAG  90

seq1  GCATGCACCAACATACCTGAGTACTTTTCTTGCCTTAGAGTCCCTCTCAC  150
       |||||| ||||||| |||||||| |||||||||||||||||||||||||
seq2  ACATGCA-CAACATA-CTGAGTAC-TTTCTTGCCTTAGAGTCCCTCTCAC  137

seq1  CCACACTTTCCCCAACACCAAAGCTGACTGGCTTTCCTCCTTCCCTTAGG  200
      |||||||||||||||||||||||||||||||||||||||||| || ||||
seq2  CCACACTTTCCCCAACACCAAAGCTGACTGGCTTTCCTCCTTTCCCTAGG  187

seq1  CTCTGCTGTCTCAGGTCTGCTGTCTTCAGCTTCTCCCCATTTTCATTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCTGTCTCAGGTCTGCTGTCTTCAGCTTCTCCCCATTTTCATTATT  237

seq1  TCAGGGGGAAATGTTTCCCACCCGATACAGGTTTATATATCAAAGTCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGGGAAATGTTTCCCACCCGATACAGGTTTATATATCAAAGTCTTC  287

seq1  CTTCAGCTAGAAACAGAGTCACTGAGGAGGTAATTCGTTGAGAGAAGGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGCTAGAAACAGAGTCACTGAGGAGGTAATTCGTTGAGAGAAGGTT  337

seq1  ACACTAACCCAATGTAGCTTGTGTCTCTAGAAAAAGAAGACATTGAGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTAACCCAATGTAGCTTGTGTCTCTAGAAAAAGAAGACATTGAGAGA  387

seq1  CCTGTGCACAGAGAAAATGCCAGAACTTGAAGGCGGGGATCAGGATAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGCACAGAGAAAATGCCAGAACTTGAAGGCGGGGATCAGGATAATG  437

seq1  CATCCAGAAGCCAAACAAACAAAAACACTAAGGAAATCATGAGGGATGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCAGAAGCCAAACAAACAAAAACACTAAGGAAATCATGAGGGATGTC  487

seq1  AGCAAGCTCTGAGAAGCCAGGAAAAAGGGAAAGAATAGATGCTCTCCTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGCTCTGAGAAGCCAGGAAAAAGGGAAAGAATAGATGCTCTCCTAA  537

seq1  GGAACTGGCCCTCCAGACACCTTGATCTTGAATTTCTGGTCTCCAGAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTGGCCCTCCAGACACCTTGATCTTGAATTTCTGGTCTCCAGAATT  587

seq1  GAGGGGGTAATTGACCGCACTCAGCCTGTGGGACTTTACCCTAGCAGCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGGTAATTGACCGCACTCAGCCTGTGGGACTTTACCCTAGCAGCTC  637

seq1  TTCCCACCTAGTAAGCTGGCTTCCTGGGAGGGCTCTGCCATCCTGGGTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCACCTAGTAAGCTGGCTTCCTGGGAGGGCTCTGCCATCCTGGGTGG  687

seq1  TCAACTCAGCATGTTTGTGACGGCCTCAGTGGCAAGTGAGGTGTTCCTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTCAGCATGTTTGTGACGGCCTCAGTGGCAAGTGAGGTGTTCCTTT  737

seq1  TAGGAATCTGGCACTCCAAATGTGGGAAAGGCAGAGCTGGAAGTATCAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAATCTGGCACTCCAAATGTGGGAAAGGCAGAGCTGGAAGTATCAGA  787

seq1  ACCATCGGGGAAGCAGCTGCCGGAAGATCTGCAAATACTGCCCCAGTCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCGGGGAAGCAGCTGCCGGAAGATCTGCAAATACTGCCCCAGTCTC  837

seq1  GAGGTTCCTGATCGTGGCTGGGCGCCAGGCTCATTCGTTCAATCTTCTGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTCCTGATCGTGGCTGGGCGCCAGGCTCATTCGTTCAATCTTCTGG  887

seq1  GCTTCACGAGACACCGTGTATCTTTCTTTTTACTGTGTGTCCTGTTCCTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCACGAGACACCGTGTATCTTTCTTTTTACTGTGTGTCCTGTTCCTT  937

seq1  TGCTAAGCTTTGGTGTTCTAGTTTCAGTTCTATTTCATTCCTGAGGGAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAAGCTTTGGTGTTCTAGTTTCAGTTCTATTTCATTCCTGAGGGAAA  987

seq1  GTCAGGGCAGTCACATGTCCACAGTCTGGAGCAGAGAGAAAGACGTGAAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGGCAGTCACATGTCCACAGTCTGGAGCAGAGAGAAAGACGTGAAT  1037

seq1  TC  1052
      ||
seq2  TC  1039