BAC Information

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BAC

Clone NameB6Ng01-112N24
Chromosome6 (Build37)
Map Location 25,346,120 - 25,464,114
singlet/doubletdoublet
Overlap genenone
Upstream geneIqub, Ndufa5, Asb15, EG626715, Lmod2, Wasl, 4932701A20Rik, Hyal4, Spam1, Hyal5, 6332401O19Rik, LOC384358
Downstream geneGpr37, Pot1a, EG626912, LOC100041210
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-112N24.bB6Ng01-112N24.g
ACCDH918820DH918821
length7181,024
definitionDH918820|Mus musculus domesticus DNA, BAC clone: B6Ng01-112N24, 5' end.DH918821|Mus musculus domesticus DNA, BAC clone: B6Ng01-112N24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,346,120 - 25,346,829)(25,463,090 - 25,464,114)
sequence
gaattctaggaaatgctcttctagttatggtatggctgttgcacacatga
tctcatagcagtagtggttactgaacaaaacctccacaacatcaagccaa
taagaatttcagtatggatagggtaagagctgacaaatcccttggcctta
ctgaattggtgtatgcctgataggtgcaatactattttgtttttttaata
aggaaaatgaatttgccaactttcttaataacatatttagtttttcctca
atgaagctccatgtttcctttgtcatatatttagattctgcacaagcttg
aatctgtggtatcttaattgtgtttgattgctttatttttagtataattt
tccataatttatttttaatcacattacatcctattctctgccctctcttg
attctcttctcctaatcatacccgttacaaatccctccttccattactcc
ctccctttctctgaagaagaggaagccccttgggtactacaacaccctgg
ggcaactagtcccagaagaactaaagaccttctctcccactgaagcccaa
caaggaagtacaggtaggagaagggagtccaatggcaggcaacagaagtc
aaagacagctcttctgcacttccaattgttaagggacccacatgaaggac
caagctgcattatcttgctatgaacaaaagttgggggatgggggcaggta
cagttggaacatgccttt
gaattcagtaaatattttcactaatctcaaatacttcaaaaatttccaca
gtccattgactgcagaggtgaatattactcaatttccatatgtttatgaa
atttccaaaattccttccattattaatttatactttcattgcattctaat
aagataatccacctgacatcactttaatattatgtttcctgtcatttgtt
ttgtgatgtgatatgtaatctaactgaacataatgcacatgatgttaaga
actctgtgtgtttcatgttgtttcctggcaagttttgtatttatcataga
ctcatttttcttaaagtataattcaactccagtattttatttttaaaaaa
tcttctgtgtatataatctgcccattgttgaaagtaaggtagggagctct
ttgctattacaggactggactcggtctcttgcttctgatcatgtaataat
agatatattttacaatgtgtggttatatcttctgataacacacaagatac
tgaattttcaatccttttaattcatttagaaacaataaccttgctacttg
ctctttattcagtctgttgtaaaacattatgtagactctggaaattttga
ctctaatcataagagaactatatacaatgtatttttcttttagtttataa
aggaaatagtgttgatatctctgatattctgaaacatctaaaggatgctt
gactgtcccacatctatcctggaaatatgtaaatatgcttggaaacataa
ctatttcaaagataaattgacttttgcttcttccatcactcttttggatc
atattatttaaaaccttgatcatcaaccatgtatctattctttgaaccat
attttctttaaaggtaacattgaaataattttcatttcataaatgattgg
tgagagcatctgatgactctatcacttgttaagagcacatcgatcaaaat
tattttgatatttgccctgattcatcaaaaaagaaacaataacaaaacag
gcaatgataatatacatctaatac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_25346120_25346829
seq2: B6Ng01-112N24.b_49_766

seq1  GAATTCTAGGAAATGCTCTTCTAGTTATGGTATGGCTGTTGCACACATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGGAAATGCTCTTCTAGTTATGGTATGGCTGTTGCACACATGA  50

seq1  TCTCATAGCAGTAGTGGTTACTGAACAAAACCTCCACAACATCAAGCCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATAGCAGTAGTGGTTACTGAACAAAACCTCCACAACATCAAGCCAA  100

seq1  TAAGAATTTCAGTATGGATAGGGTAAGAGCTGACAAATCCCTTGGCCTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAATTTCAGTATGGATAGGGTAAGAGCTGACAAATCCCTTGGCCTTA  150

seq1  CTGAATTGGTGTATGCCTGATAGGTGCAATACTATTTTGTTTTTTTAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATTGGTGTATGCCTGATAGGTGCAATACTATTTTGTTTTTTTAATA  200

seq1  AGGAAAATGAATTTGCCAACTTTCTTAATAACATATTTAGTTTTTCCTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAATGAATTTGCCAACTTTCTTAATAACATATTTAGTTTTTCCTCA  250

seq1  ATGAAGCTCCATGTTTCCTTTGTCATATATTTAGATTCTGCACAAGCTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGCTCCATGTTTCCTTTGTCATATATTTAGATTCTGCACAAGCTTG  300

seq1  AATCTGTGGTATCTTAATTGTGTTTGATTGCTTTATTTTTAGTATAATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGTGGTATCTTAATTGTGTTTGATTGCTTTATTTTTAGTATAATTT  350

seq1  TCCATAATTTATTTTTAATCACATTACATCCTATTCTCTGCCCTCTCTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATAATTTATTTTTAATCACATTACATCCTATTCTCTGCCCTCTCTTG  400

seq1  ATTCTCTTCTCCTAATCATACCCGTTACAAATCCCTCCTTCCATTACTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCTTCTCCTAATCATACCCGTTACAAATCCCTCCTTCCATTACTCC  450

seq1  CTCCCTTTCTCTGAAGAAGAGGAAGCCCCTTGGGTACTACAACACCCTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTTTCTCTGAAGAAGAGGAAGCCCCTTGGGTACTACAACACCCTGG  500

seq1  GGCAACTAGTCCCAGAAGAACTAAAGACCTTCTCTCCCACTGAAGCCCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAACTAGTCCCAGAAGAACTAAAGACCTTCTCTCCCACTGAAGCCCAA  550

seq1  CAAGGAAGTACAGGTAGGAGAAGGGAGTCCAATGGCAGGCAACAG-AGTC  599
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CAAGGAAGTACAGGTAGGAGAAGGGAGTCCAATGGCAGGCAACAGAAGTC  600

seq1  AAAGACAGCTC-TCTGCAC-TCCAATTGTT-AGGGACCCACATGAA-GAC  645
      ||||||||||| ||||||| |||||||||| ||||||||||||||| |||
seq2  AAAGACAGCTCTTCTGCACTTCCAATTGTTAAGGGACCCACATGAAGGAC  650

seq1  CAAGCTGCA-TATC-TGCTATGAAC-AGAGTTGGGGGATGGGGGCAGGTA  692
      ||||||||| |||| |||||||||| | ||||||||||||||||||||||
seq2  CAAGCTGCATTATCTTGCTATGAACAAAAGTTGGGGGATGGGGGCAGGTA  700

seq1  CAGTTGG-ACATGCTCTTT  710
      ||||||| |||||| ||||
seq2  CAGTTGGAACATGC-CTTT  718

seq1: chr6_25463090_25464114
seq2: B6Ng01-112N24.g_67_1084 (reverse)

seq1  GATGTATATTATCATTGCCCTGTTTTGTTTATTTGTTTTCTTTTTTGATG  50
      ||||||||||||||||| ||||||||| |||||   ||||||||||||||
seq2  GATGTATATTATCATTG-CCTGTTTTG-TTATT--GTTTCTTTTTTGATG  46

seq1  AATCAGGGCAAATATCAAAATAATTTTGATCGATGTTGCTCTTTAACAAG  100
      ||||||||||||||||||||||||||||||||||| ||||| ||||||||
seq2  AATCAGGGCAAATATCAAAATAATTTTGATCGATG-TGCTC-TTAACAAG  94

seq1  TGATAGAGTCATCAGATGCTCTCACCCAATCATTTATGAAATGAAAATTA  150
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TGATAGAGTCATCAGATGCTCTCA-CCAATCATTTATGAAATGAAAATTA  143

seq1  TTTCAATGTTACCTTTAAAGAAAATATGGTTCAAAGAATAGATACATGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAATGTTACCTTTAAAGAAAATATGGTTCAAAGAATAGATACATGGT  193

seq1  TGATGATCAAGGTTTTAAATAATATGATCCAAAAGAGTGATGGAAGAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGATCAAGGTTTTAAATAATATGATCCAAAAGAGTGATGGAAGAAGC  243

seq1  AAAAGTCAATTTATCTTTGAAATAGTTATGTTTCCAAGCATATTTACATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTCAATTTATCTTTGAAATAGTTATGTTTCCAAGCATATTTACATA  293

seq1  TTTCCAGGATAGATGTGGGACAGTCAAGCATCCTTTAGATGTTTCAGAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAGGATAGATGTGGGACAGTCAAGCATCCTTTAGATGTTTCAGAAT  343

seq1  ATCAGAGATATCAACACTATTTCCTTTATAAACTAAAAGAAAAATACATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAGATATCAACACTATTTCCTTTATAAACTAAAAGAAAAATACATT  393

seq1  GTATATAGTTCTCTTATGATTAGAGTCAAAATTTCCAGAGTCTACATAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATAGTTCTCTTATGATTAGAGTCAAAATTTCCAGAGTCTACATAAT  443

seq1  GTTTTACAACAGACTGAATAAAGAGCAAGTAGCAAGGTTATTGTTTCTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTACAACAGACTGAATAAAGAGCAAGTAGCAAGGTTATTGTTTCTAA  493

seq1  ATGAATTAAAAGGATTGAAAATTCAGTATCTTGTGTGTTATCAGAAGATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATTAAAAGGATTGAAAATTCAGTATCTTGTGTGTTATCAGAAGATA  543

seq1  TAACCACACATTGTAAAATATATCTATTATTACATGATCAGAAGCAAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCACACATTGTAAAATATATCTATTATTACATGATCAGAAGCAAGAG  593

seq1  ACCGAGTCCAGTCCTGTAATAGCAAAGAGCTCCCTACCTTACTTTCAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGAGTCCAGTCCTGTAATAGCAAAGAGCTCCCTACCTTACTTTCAACA  643

seq1  ATGGGCAGATTATATACACAGAAGATTTTTTAAAAATAAAATACTGGAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCAGATTATATACACAGAAGATTTTTTAAAAATAAAATACTGGAGT  693

seq1  TGAATTATACTTTAAGAAAAATGAGTCTATGATAAATACAAAACTTGCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTATACTTTAAGAAAAATGAGTCTATGATAAATACAAAACTTGCCA  743

seq1  GGAAACAACATGAAACACACAGAGTTCTTAACATCATGTGCATTATGTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACAACATGAAACACACAGAGTTCTTAACATCATGTGCATTATGTTC  793

seq1  AGTTAGATTACATATCACATCACAAAACAAATGACAGGAAACATAATATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGATTACATATCACATCACAAAACAAATGACAGGAAACATAATATT  843

seq1  AAAGTGATGTCAGGTGGATTATCTTATTAGAATGCAATGAAAGTATAAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGATGTCAGGTGGATTATCTTATTAGAATGCAATGAAAGTATAAAT  893

seq1  TAATAATGGAAGGAATTTTGGAAATTTCATAAACATATGGAAATTGAGTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATGGAAGGAATTTTGGAAATTTCATAAACATATGGAAATTGAGTA  943

seq1  ATATTCACCTCTGCAGTCAATGGACTGTGGAAATTTTTGAAGTATTTGAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCACCTCTGCAGTCAATGGACTGTGGAAATTTTTGAAGTATTTGAG  993

seq1  ATTAGTGAAAATATTTACTGAATTC  1025
      |||||||||||||||||||||||||
seq2  ATTAGTGAAAATATTTACTGAATTC  1018