BAC Information

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BAC

Clone NameB6Ng01-113C22
Chromosome6 (Build37)
Map Location 83,067,689 - 83,251,268
singlet/doubletdoublet
Overlap geneGcs1, Wbp1, Znhit4, Rtkn, Wdr54, 1700003E16Rik, Dctn1, C330016K18Rik
Upstream geneEG622198, Tacr1, Pole4, LOC100043412, Hk2, EG622318, Sema4f, D6Mm5e, Dok1, Loxl3, Htra2, Aup1, Dqx1, Tlx2, Pcgf1, Lbx2, A230058J24Rik, Mrpl53
Downstream geneMthfd2, Mobk1b, Bola3, D230004J03Rik, Dguok, Actg2, Stambp, LOC664956, Clec4f, Cd207, Vax2os2, Vax2os1, Vax2, Atp6v1b1, 1700124L16Rik, Ankrd53, Tex261, LOC665004, Nagk, Paip2b, LOC384450, LOC622683, LOC380687, LOC665098, LOC676366, Zfml, Dysf, LOC665114
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-113C22.bB6Ng01-113C22.g
ACCDH919042DH919043
length1,0451,031
definitionDH919042|Mus musculus domesticus DNA, BAC clone: B6Ng01-113C22, 5' end.DH919043|Mus musculus domesticus DNA, BAC clone: B6Ng01-113C22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,067,689 - 83,068,733)(83,250,246 - 83,251,268)
sequence
gaattcctagtgcaacgggcagcccatgccaaccccccaaccctgctcct
gccagtcgtacacatgctagaaggccatgaccctgatgatttggcctttc
tccgcaaggctttcccccgcctgcatgcctggttctcttggctccatcaa
agtcaggcagggccagtgccactatcctaccgctggcggggcagggacct
agctttgcctaccctacttaaccccaagacgctgccctcaggcctggatg
actaccctagggcctcgcatccttccacagcagagcggcacctggacctg
cgctgctgggtggcactgggtgcccgggtgctgtcccagcttgcagaaca
gcttggggagactgaagctgctgcagagctgggcccattggctgcctctc
tagaagaacctggaagtcttgatgagctgcactgggctcctgagctgggg
gtctttgctgactttgggaaccacacaaaagcagtacagctcaagtcgag
gcccccacaggggctggttagggtggtaggcaggcctccacctcgattac
agtatgtggatgccctgggctatgtctctctttttcctttgctactacag
ctgctggaccccagctcaccccgcttaggacccctgctagacgttctagc
tgatagtcgccatctctggagcccttttgggttgcgctctctttcagcct
ctagcctcttttataaacagcgtaacactgagcacgatccaccctactgg
cgaggtgccgtgtggctgaatattaactacctagctttgggggcactaca
tcactatgggcatgtggagggtcctcacaaaggttcaggctgccaaactc
taccatgaactgcgggccaatgtagtgagaaacgtccgccagcaatacaa
gctaccggatttctgtgggagcagtacagtgaccaggatgggcggggcat
gggctgccgcccccttccaaggatggacagtcttgtctactgatcatggt
ctgagatactaatgggaacgaaaggaaagctagggccatttgtgt
gaattcctgttcctcctggctctgctgtgatcatagacacatatgtacca
acattcttgatttcataaagttctggggattgaacccagggctttctaca
tgagaggcagacactctaaccattgagctacctccctcccccaagtcctt
ttcctgaatgtttctatgtctactttctagttagctttcttcagtcctta
tctgacctgtgataactagccccactgttgcttaatttcttggagtgcct
tgtgttttgaccctttgtatatccacccaagcttcctttacagataatca
agctagccttcattgttgaatactttctttgttctgtgttcactttcagt
attctgtgtaatgatttgcagttcgttccttttctaacgttgaattcctt
tgtgcactgaaaccctgtttggtggcaatgaatgcatacatttagttctt
catctccatggccaggttactcacctgtctcccgggtgtgggccagcaaa
gccggccttgcccctcaatcctgcagccaatgattagacttgtctgatgc
tcagagtctacctcacatgagccccttccctacccctacaccacaccacc
ctggcctagagcagtttatggctgctcagggagggagtcatttccttatg
agtgtacccactgataagtctcccttggctcagtcaataaccccgtaccc
atgcacgtggaaaagagaagaggagatagcctttaccttcgatccagttc
tgagccactgatgggaggagtcagagagagtaactccaactggaagatct
tttttcctggagggaaatgaggagccagctgtgagcaagcccagcagggt
accggggacggtcttgttatccagaacccccttcacccactctgtgttct
gctcttcagccctagccacactgcacaaggggaaaggaatactggggcct
tcacagaaggatgggtggctttcagtctcaacacctcacacaggggctct
tagcttggttaggaaaggcattggggagggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_83067689_83068733
seq2: B6Ng01-113C22.b_46_1090

seq1  GAATTCCTAGTGCAACGGGCAGCCCATGCCAACCCCCCAACCCTGCTCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAGTGCAACGGGCAGCCCATGCCAACCCCCCAACCCTGCTCCT  50

seq1  GCCAGTCGTACACATGCTAGAAGGCCATGACCCTGATGATTTGGCCTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTCGTACACATGCTAGAAGGCCATGACCCTGATGATTTGGCCTTTC  100

seq1  TCCGCAAGGCTTTCCCCCGCCTGCATGCCTGGTTCTCTTGGCTCCATCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGCAAGGCTTTCCCCCGCCTGCATGCCTGGTTCTCTTGGCTCCATCAA  150

seq1  AGTCAGGCAGGGCCAGTGCCACTATCCTACCGCTGGCGGGGCAGGGACCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGGCAGGGCCAGTGCCACTATCCTACCGCTGGCGGGGCAGGGACCT  200

seq1  AGCTTTGCCTACCCTACTTAACCCCAAGACGCTGCCCTCAGGCCTGGATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTGCCTACCCTACTTAACCCCAAGACGCTGCCCTCAGGCCTGGATG  250

seq1  ACTACCCTAGGGCCTCGCATCCTTCCACAGCAGAGCGGCACCTGGACCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACCCTAGGGCCTCGCATCCTTCCACAGCAGAGCGGCACCTGGACCTG  300

seq1  CGCTGCTGGGTGGCACTGGGTGCCCGGGTGCTGTCCCAGCTTGCAGAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTGCTGGGTGGCACTGGGTGCCCGGGTGCTGTCCCAGCTTGCAGAACA  350

seq1  GCTTGGGGAGACTGAAGCTGCTGCAGAGCTGGGCCCATTGGCTGCCTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGGGAGACTGAAGCTGCTGCAGAGCTGGGCCCATTGGCTGCCTCTC  400

seq1  TAGAAGAACCTGGAAGTCTTGATGAGCTGCACTGGGCTCCTGAGCTGGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGAACCTGGAAGTCTTGATGAGCTGCACTGGGCTCCTGAGCTGGGG  450

seq1  GTCTTTGCTGACTTTGGGAACCACACAAAAGCAGTACAGCTCAAGTCGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTGCTGACTTTGGGAACCACACAAAAGCAGTACAGCTCAAGTCGAG  500

seq1  GCCCCCACAGGGGCTGGTTAGGGTGGTAGGCAGGCCTCCACCTCGATTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCCACAGGGGCTGGTTAGGGTGGTAGGCAGGCCTCCACCTCGATTAC  550

seq1  AGTATGTGGATGCCCTGGGCTATGTCTCTCTTTTTCCTTTGCTACTACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGTGGATGCCCTGGGCTATGTCTCTCTTTTTCCTTTGCTACTACAG  600

seq1  CTGCTGGACCCCAGCTCACCCCGCTTAGGACCCCTGCTAGACGTTCTAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGGACCCCAGCTCACCCCGCTTAGGACCCCTGCTAGACGTTCTAGC  650

seq1  TGATAGTCGCCATCTCTGGAGCCCTTTTGGGTTGCGCTCTCTTTCAGCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGTCGCCATCTCTGGAGCCCTTTTGGGTTGCGCTCTCTTTCAGCCT  700

seq1  CTAGCCTCTTTTATAAACAGCGTAACACTGAGCACGATCCACCCTACTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCCTCTTTTATAAACAGCGTAACACTGAGCACGATCCACCCTACTGG  750

seq1  CGAGGTGCCGTGTGGCTGAATATTAACTACCTAGCTTTGGGGGCACTACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGGTGCCGTGTGGCTGAATATTAACTACCTAGCTTTGGGGGCACTACA  800

seq1  TCACTATGGGCATGTGGAGGGTCCTCAC-AAGGTTCAGGCTGCCAAACTC  849
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TCACTATGGGCATGTGGAGGGTCCTCACAAAGGTTCAGGCTGCCAAACTC  850

seq1  TACCATGAACTGCGGGCCAATGTAGTGAGAAACGTCCGCCAGCAATACCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TACCATGAACTGCGGGCCAATGTAGTGAGAAACGTCCGCCAGCAATA-CA  899

seq1  GGCTACCGGATTTCTGTGGGAGCAGTACAGTGACCAGGATGGGCGGGGCA  949
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTACCGGATTTCTGTGGGAGCAGTACAGTGACCAGGATGGGCGGGGCA  949

seq1  TGGGCTGCCG-CCCCTTCCAAGGATGGACCAGTCTTGTCTTACTGATCAT  998
      |||||||||| ||||||||||||||||| |||||||||| ||||||||||
seq2  TGGGCTGCCGCCCCCTTCCAAGGATGGA-CAGTCTTGTC-TACTGATCAT  997

seq1  GG-CTGAAGAGTACTAATGGG-ACAGAAGGAAAGCTA-GGCCATTTGTGT  1045
      || ||| ||| |||||||||| ||  ||||||||||| ||||||||||||
seq2  GGTCTG-AGA-TACTAATGGGAACGAAAGGAAAGCTAGGGCCATTTGTGT  1045

seq1: chr6_83250246_83251268
seq2: B6Ng01-113C22.g_68_1098 (reverse)

seq1  GCCCTCCCC-ATGCCCTTCCTAACC-AGCTAAGAGCCCCTGTGTGAGGTG  48
      ||||||||| ||||| ||||||||| ||||||||||||||||||||||||
seq2  GCCCTCCCCAATGCCTTTCCTAACCAAGCTAAGAGCCCCTGTGTGAGGTG  50

seq1  TTGAGACTG-AAGCCACCCATCC-TCTGTG-AGGCCCCAGTATTCC-TTC  94
      ||||||||| ||||||||||||| |||||| ||||||||||||||| |||
seq2  TTGAGACTGAAAGCCACCCATCCTTCTGTGAAGGCCCCAGTATTCCTTTC  100

seq1  CCCTTGTGCAGTGTTGGCTAGGGCTGAAGAGCAGAACACAGAGTGGGTG-  143
      ||||||||||||| ||||||||||||||||||||||||||||||||||| 
seq2  CCCTTGTGCAGTG-TGGCTAGGGCTGAAGAGCAGAACACAGAGTGGGTGA  149

seq1  AGGGGGTTCTGGATAACAAGACCGTCCCCGGTACCCTGCTGGGCTTGCTC  193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGTTCTGGATAACAAGACCGTCCCCGGTACCCTGCTGGGCTTGCTC  199

seq1  ACAGCTGGCTCCTCATTTCCCTCCAGG-AAAAAGATCTTCCAGTTGGAGT  242
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ACAGCTGGCTCCTCATTTCCCTCCAGGAAAAAAGATCTTCCAGTTGGAGT  249

seq1  TACTCTCTCTGACTCCT-CCATCAGTGGCTCAGAACTGGATCGAAGGTAA  291
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TACTCTCTCTGACTCCTCCCATCAGTGGCTCAGAACTGGATCGAAGGTAA  299

seq1  AGGCTATCTCCTCTTCTCTTTTCCACGTGCATGGGTACGGGGTTATTGAC  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTATCTCCTCTTCTCTTTTCCACGTGCATGGGTACGGGGTTATTGAC  349

seq1  TGAGCCAAGGGAGACTTATCAGTGGGTACACTCATAAGGAAATGACTCCC  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCAAGGGAGACTTATCAGTGGGTACACTCATAAGGAAATGACTCCC  399

seq1  TCCCTGAGCAGCCATAAACTGCTCTAGGCCAGGGTGGTGTGGTGTAGGGG  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGAGCAGCCATAAACTGCTCTAGGCCAGGGTGGTGTGGTGTAGGGG  449

seq1  TAGGGAAGGGGCTCATGTGAGGTAGACTCTGAGCATCAGACAAGTCTAAT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGAAGGGGCTCATGTGAGGTAGACTCTGAGCATCAGACAAGTCTAAT  499

seq1  CATTGGCTGCAGGATTGAGGGGCAAGGCCGGCTTTGCTGGCCCACACCCG  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGCTGCAGGATTGAGGGGCAAGGCCGGCTTTGCTGGCCCACACCCG  549

seq1  GGAGACAGGTGAGTAACCTGGCCATGGAGATGAAGAACTAAATGTATGCA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACAGGTGAGTAACCTGGCCATGGAGATGAAGAACTAAATGTATGCA  599

seq1  TTCATTGCCACCAAACAGGGTTTCAGTGCACAAAGGAATTCAACGTTAGA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTGCCACCAAACAGGGTTTCAGTGCACAAAGGAATTCAACGTTAGA  649

seq1  AAAGGAACGAACTGCAAATCATTACACAGAATACTGAAAGTGAACACAGA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAACGAACTGCAAATCATTACACAGAATACTGAAAGTGAACACAGA  699

seq1  ACAAAGAAAGTATTCAACAATGAAGGCTAGCTTGATTATCTGTAAAGGAA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGAAAGTATTCAACAATGAAGGCTAGCTTGATTATCTGTAAAGGAA  749

seq1  GCTTGGGTGGATATACAAAGGGTCAAAACACAAGGCACTCCAAGAAATTA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGGTGGATATACAAAGGGTCAAAACACAAGGCACTCCAAGAAATTA  799

seq1  AGCAACAGTGGGGCTAGTTATCACAGGTCAGATAAGGACTGAAGAAAGCT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACAGTGGGGCTAGTTATCACAGGTCAGATAAGGACTGAAGAAAGCT  849

seq1  AACTAGAAAGTAGACATAGAAACATTCAGGAAAAGGACTTGGGGGAGGGA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGAAAGTAGACATAGAAACATTCAGGAAAAGGACTTGGGGGAGGGA  899

seq1  GGTAGCTCAATGGTTAGAGTGTCTGCCTCTCATGTAGAAAGCCCTGGGTT  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGCTCAATGGTTAGAGTGTCTGCCTCTCATGTAGAAAGCCCTGGGTT  949

seq1  CAATCCCCAGAACTTTATGAAATCAAGAATGTTGGTACATATGTGTCTAT  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCCCAGAACTTTATGAAATCAAGAATGTTGGTACATATGTGTCTAT  999

seq1  GATCACAGCAGAGCCAGGAGGAACAGGAATTC  1023
      ||||||||||||||||||||||||||||||||
seq2  GATCACAGCAGAGCCAGGAGGAACAGGAATTC  1031