BAC Information

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BAC

Clone NameB6Ng01-113D14
Chromosome6 (Build37)
Map Location 98,661,461 - 98,815,787
singlet/doubletdoublet
Overlap geneLOC665979
Upstream geneLOC641241, LOC100043692, Mitf, Gm765, LOC666019, LOC665963
Downstream geneFoxp1, Eif4e3, Gpr27, Prok2, LOC384466, LOC626503
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-113D14.bB6Ng01-113D14.g
ACCDH919074DH919075
length1,0441,053
definitionDH919074|Mus musculus domesticus DNA, BAC clone: B6Ng01-113D14, 5' end.DH919075|Mus musculus domesticus DNA, BAC clone: B6Ng01-113D14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,661,461 - 98,662,498)(98,814,741 - 98,815,787)
sequence
gaattccagttgtgtaactttttttctttccccatcttcccctaccaaca
ttcatttccaagactttagcgttaaatggctcttccttaatgtgcaaagg
atttaatgacaatcgtggctcaaatctccttcttcagttcacctaatgtc
actatacatgttcctttccataatctttctcacttgcttctaacttaccc
cttcttgctctaaactaggtctttgtaagtcattttaaatatttccggga
atcaaacagatacaatacaatacaataaaatcactgttgcctagagacca
tacagtctgggtttttcacattaactaataagctaggcaggccttcaggg
aaatcagagcatccaattctcatgttttctgtagattaatcatgaaattc
ttataattccttcatgaggtattgcaccaccaattcaatcaactcttggc
tgggataggctgagtcaaaaatgggggaaactagaaattataagatggga
aggaaggacttaaagagaagcatgagttgttcataggaatgtttgtggaa
gcctgcagacatggatccacggatatatagattcaacacagtggaaatta
cagaggggcactatgtagggcaacatctcatttccttgctgagtttccct
gtgctgcagtggagaatgactaaccatttcctaaagaaatccctattact
cgtcactctggaagatgctaagtatagtgcccggggtatgcagctttcta
gtggtaacaatactcacaatcccacaatacacagcacgtcttcctatggc
ttttgctgtgtgtttccttctgagagctctgtttatttgcatattacaca
acacatctctgtgtattttcttgtctttgcttacacagcagttctcccca
ccctgaccccacccccggcttcagttaaaggtgttgctgggaggagtgag
tgtagcagcagtcccagatggtgcccagactgagctaattttattgactt
gcacctgatttccttatacaccttgaaatatgccacgaaccatc
gaattctgacttcagatcccatcttcacagtgagtctataggcaggtcca
tggtacctgtctcaatgtcatgactccactagggactgaaatcctggcaa
tttgtgaaagagttttgcaaagtcctgctgtctatgtagaaatggacttc
tccctttctcccaacagacatttggtaaagtctttgctacgtctctggtt
tgtgcaaattagtgatttttgctactggcatctggtgcatgggggtcagg
atgctactaaagtccttctgtgtgtagcctggtcccccacaacaaactgt
ttactcaggggccatgtcagcagcactgctgatgaaaagctgtggttgga
catttagatagcctttaatggaattcttacaaatctattttgatggctgc
acggggctgcttcatggttttcctgaaactgagctggatgggaactacag
atgatttcaatttcatcttccttggggctttgctgccgtccatggacccc
ctagcgtctcaccagcaatggcagctccaggcagttgttttgtagtttgt
ttacttttctttaatgcagcttttgtttttaggatctttaggcagtgatc
agctggcctcaatgcaaagctccaaatgccattttttctcagactggcac
ataaaaattgtagagtcccaaactctgtgtataacataggttcctcgaaa
tatatgatttcactctggccttgcctgagctttgccccagattttaatct
gcttttaagaggttaatttcatgttagcaatagaatgacgtgacaacttg
tgtactagaagtctctccttccagatccttgcattttctgtggaataaga
aatgtcatcaccagtgcaagggccttatatggttcttgaataaaaacaga
aatattttttcttccttgtgtgtatcaggaggtttgattggttgttcatc
agcatctgtaatctaactcccactagaagaaagccaaaactgcccttgaa
attgatgcactagctaggcaggattggtttaacacccaaaccctatacta
cct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_98661461_98662498
seq2: B6Ng01-113D14.b_48_1091

seq1  GAATTCCAGTTGTGTAACTTTTTTTCTTTCCCCATCTTCCCCTACCAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTTGTGTAACTTTTTTTCTTTCCCCATCTTCCCCTACCAACA  50

seq1  TTCATTTCCAAGACTTTAGCGTTAAATGGCTCTTCCTTAATGTGCAAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTCCAAGACTTTAGCGTTAAATGGCTCTTCCTTAATGTGCAAAGG  100

seq1  ATTTAATGACAATCGTGGCTCAAATCTCCTTCTTCAGTTCACCTAATGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATGACAATCGTGGCTCAAATCTCCTTCTTCAGTTCACCTAATGTC  150

seq1  ACTATACATGTTCCTTTCCATAATCTTTCTCACTTGCTTCTAACTTACCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATACATGTTCCTTTCCATAATCTTTCTCACTTGCTTCTAACTTACCC  200

seq1  CTTCTTGCTCTAAACTAGGTCTTTGTAAGTCATTTTAAATATTTCCGGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTGCTCTAAACTAGGTCTTTGTAAGTCATTTTAAATATTTCCGGGA  250

seq1  ATCAAACAGATACAATACAATACAATAAAATCACTGTTGCCTAGAGACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAACAGATACAATACAATACAATAAAATCACTGTTGCCTAGAGACCA  300

seq1  TACAGTCTGGGTTTTTCACATTAACTAATAAGCTAGGCAGGCCTTCAGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTCTGGGTTTTTCACATTAACTAATAAGCTAGGCAGGCCTTCAGGG  350

seq1  AAATCAGAGCATCCAATTCTCATGTTTTCTGTAGATTAATCATGAAATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAGAGCATCCAATTCTCATGTTTTCTGTAGATTAATCATGAAATTC  400

seq1  TTATAATTCCTTCATGAGGTATTGCACCACCAATTCAATCAACTCTTGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAATTCCTTCATGAGGTATTGCACCACCAATTCAATCAACTCTTGGC  450

seq1  TGGGATAGGCTGAGTCAAAAATGGGGGAAACTAGAAATTATAAGATGGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATAGGCTGAGTCAAAAATGGGGGAAACTAGAAATTATAAGATGGGA  500

seq1  AGGAAGGACTTAAAGAGAAGCATGAGTTGTTCATAGGAATGTTTGTGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGGACTTAAAGAGAAGCATGAGTTGTTCATAGGAATGTTTGTGGAA  550

seq1  GCCTGCAGACATGGATCCACGGATATATAGATTCAACACAGTGGAAATTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCAGACATGGATCCACGGATATATAGATTCAACACAGTGGAAATTA  600

seq1  CAGAGGGGCACTATGTAGGGCAACATCTCA-TTCCTTGCTGAGTTTCCCT  649
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CAGAGGGGCACTATGTAGGGCAACATCTCATTTCCTTGCTGAGTTTCCCT  650

seq1  GTGCTGCAGTGGAGAATGACTAACCA-TTCCTAAAGAAATCCCTATTACT  698
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GTGCTGCAGTGGAGAATGACTAACCATTTCCTAAAGAAATCCCTATTACT  700

seq1  CGTCACTCTGGAAGATGCTAAGTATAGTGCCC-GGGTATGCAGC-TTCTA  746
      |||||||||||||||||||||||||||||||| ||||||||||| |||||
seq2  CGTCACTCTGGAAGATGCTAAGTATAGTGCCCGGGGTATGCAGCTTTCTA  750

seq1  GTGGTAACAATACTCACAATCCCACAATACACAGCACGTC-TCCTATGGC  795
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GTGGTAACAATACTCACAATCCCACAATACACAGCACGTCTTCCTATGGC  800

seq1  TTTTGCTGTGTG-TTCCTTCTGAGAGCTCTGTTTATTTGCATATTACACA  844
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TTTTGCTGTGTGTTTCCTTCTGAGAGCTCTGTTTATTTGCATATTACACA  850

seq1  ACACATCTCTGTGTA-TTTCCTGTC-TTGCTTACACAGCAGTTGCTCCCC  892
      ||||||||||||||| |||| |||| ||||||||||||||||| ||||||
seq2  ACACATCTCTGTGTATTTTCTTGTCTTTGCTTACACAGCAGTT-CTCCCC  899

seq1  ACCCTGACCCCCACCCCCGGCTTCAGTTGAAGGTG-TGCTGTGAGGAGTG  941
      ||||||| |||||||||||||||||||| |||||| ||||| ||||||||
seq2  ACCCTGA-CCCCACCCCCGGCTTCAGTTAAAGGTGTTGCTGGGAGGAGTG  948

seq1  GGTGTAGCAGCAGTCCCAAGATGGTGCCCAGGACTGCAGCTAAGTCTTAT  991
       |||||||||||||||| |||||||||||| ||||| |||||| | |  |
seq2  AGTGTAGCAGCAGTCCC-AGATGGTGCCCA-GACTG-AGCTAATTTTATT  995

seq1  GACTTGCACCTGACTTCCTCATACACCTGAAAATA-GCCACG-ACCATC  1038
      ||||||||||||| ||||| ||||||||  ||||| |||||| ||||||
seq2  GACTTGCACCTGATTTCCTTATACACCTTGAAATATGCCACGAACCATC  1044

seq1: chr6_98814741_98815787
seq2: B6Ng01-113D14.g_68_1119 (reverse)

seq1  GGTAG--TAGGGTCTGGGTTGTTAAACATATTCCTGCCTAGCTAGTGGCT  48
      |||||  |||||| |||| ||||||||  | ||||||||||||||||  |
seq2  GGTAGTATAGGGTTTGGG-TGTTAAAC-CAATCCTGCCTAGCTAGTGCAT  48

seq1  CAATTTCATGGGCAGTTTTGGCTATCTGTCTAGTGGGAGGTTAGATTACA  98
      |||||||| |||||||||||||| ||| |||||||||| |||||||||||
seq2  CAATTTCAAGGGCAGTTTTGGCTTTCT-TCTAGTGGGA-GTTAGATTACA  96

seq1  GTTGCTGATGAACAGCCAATC-AACCTCCTGACTACACAC-AGGAAG-AT  145
      | |||||||||||| |||||| |||||||||| ||||||| |||||| | 
seq2  GATGCTGATGAACAACCAATCAAACCTCCTGA-TACACACAAGGAAGAAA  145

seq1  AGATGTTTCTGTTTTTAT--CAGAACCATATAAGGCCC-TGCACTGGTGA  192
      | || |||||||||||||   ||||||||||||||||| |||||||||||
seq2  AAATATTTCTGTTTTTATTCAAGAACCATATAAGGCCCTTGCACTGGTGA  195

seq1  TGACATTTCTTATTCCACAGGAAATGCAATGGATCTGGAAGGAGAGACTA  242
      |||||||||||||||||||| |||||||| ||||||||||||||||||| 
seq2  TGACATTTCTTATTCCACAGAAAATGCAA-GGATCTGGAAGGAGAGACTT  244

seq1  CTAGTACACAAGTTGTCACGTCATTCTATTGCTAACATGAAATTAACCTC  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTACACAAGTTGTCACGTCATTCTATTGCTAACATGAAATTAACCTC  294

seq1  -TAAAAGCAGATTGAAATCTGGGGC-AAGCTCAGGCAAGGCCAGAGTGAA  340
       |||||||||||| ||||||||||| ||||||||||||||||||||||||
seq2  TTAAAAGCAGATTAAAATCTGGGGCAAAGCTCAGGCAAGGCCAGAGTGAA  344

seq1  ATCATATATTTCGAGGAACCTATGTTATACACAGAGTTTGGGACTCTACA  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATATATTTCGAGGAACCTATGTTATACACAGAGTTTGGGACTCTACA  394

seq1  ATTTTTATGTGCCAGTCTGAG-AAAAATGGCATTTGGAGCTTTGCATTGA  439
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ATTTTTATGTGCCAGTCTGAGAAAAAATGGCATTTGGAGCTTTGCATTGA  444

seq1  GGCCAGCTGATCACTGCCTAAAGATCCTAAAAACAAAAGCTGCATTAAAG  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGCTGATCACTGCCTAAAGATCCTAAAAACAAAAGCTGCATTAAAG  494

seq1  AAAAGTAAACAAACTACAAAACAACTGCCTGGAGCTGCCATTGCTGGTGA  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTAAACAAACTACAAAACAACTGCCTGGAGCTGCCATTGCTGGTGA  544

seq1  GACGCTAGGGGGTCCATGGACGGCAGCAAAGCCCCAAGGAAGATGAAATT  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGCTAGGGGGTCCATGGACGGCAGCAAAGCCCCAAGGAAGATGAAATT  594

seq1  GAAATCATCTGTAGTTCCCATCCAGCTCAGTTTCAGGAAAACCATGAAGC  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCATCTGTAGTTCCCATCCAGCTCAGTTTCAGGAAAACCATGAAGC  644

seq1  AGCCCCGTGCAGCCATCAAAATAGATTTGTAAGAATTCCATTAAAGGCTA  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCGTGCAGCCATCAAAATAGATTTGTAAGAATTCCATTAAAGGCTA  694

seq1  TCTAAATGTCCAACCACAGCTTTTCATCAGCAGTGCTGCTGACATGGCCC  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAATGTCCAACCACAGCTTTTCATCAGCAGTGCTGCTGACATGGCCC  744

seq1  CTGAGTAAACAGTTTGTTGTGGGGGACCAGGCTACACACAGAAGGACTTT  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTAAACAGTTTGTTGTGGGGGACCAGGCTACACACAGAAGGACTTT  794

seq1  AGTAGCATCCTGACCCCCATGCACCAGATGCCAGTAGCAAAAATCACTAA  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCATCCTGACCCCCATGCACCAGATGCCAGTAGCAAAAATCACTAA  844

seq1  TTTGCACAAACCAGAGACGTAGCAAAGACTTTACCAAATGTCTGTTGGGA  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCACAAACCAGAGACGTAGCAAAGACTTTACCAAATGTCTGTTGGGA  894

seq1  GAAAGGGAGAAGTCCATTTCTACATAGACAGCAGGACTTTGCAAAACTCT  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGGAGAAGTCCATTTCTACATAGACAGCAGGACTTTGCAAAACTCT  944

seq1  TTCACAAATTGCCAGGATTTCAGTCCCTAGTGGAGTCATGACATTGAGAC  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAAATTGCCAGGATTTCAGTCCCTAGTGGAGTCATGACATTGAGAC  994

seq1  AGGTACCATGGACCTGCCTATAGACTCACTGTGAAGATGGGATCTGAAGT  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTACCATGGACCTGCCTATAGACTCACTGTGAAGATGGGATCTGAAGT  1044

seq1  CAGAATTC  1047
      ||||||||
seq2  CAGAATTC  1052