BAC Information

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BAC

Clone NameB6Ng01-113G01
Chromosome6 (Build37)
Map Location 56,404,945 - 56,535,955
singlet/doubletdoublet
Overlap geneEG666688
Upstream geneAdcyap1r1, LOC100042219, Neurod6, LOC100041339, Ccdc129, Gsbs, LOC100041357, Pde1c
Downstream geneLsm5, 5830411G16Rik, LOC100042288, Kbtbd2, Fkbp9, Nt5c3, LOC100042327, V1rc21, V1rc19, V1rc20, EG434016, V1rc32, V1rc30, V1rc1, V1rc3, EG626397, V1rc4, V1rc5, V1rc7, V1rc6, LOC100041445, V1r-ps6, V1rc29, V1rc16, V1rc26, V1rc27, EG434017, LOC666822, Ppm1k, Herc5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-113G01.bB6Ng01-113G01.g
ACCDH919189DH919190
length1,0741,022
definitionDH919189|Mus musculus domesticus DNA, BAC clone: B6Ng01-113G01, 5' end.DH919190|Mus musculus domesticus DNA, BAC clone: B6Ng01-113G01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,404,945 - 56,406,042)(56,534,939 - 56,535,955)
sequence
gaattcaagcacctcaatcaaagaatatactaaggaagctgatagttctc
aagacctgagatataaacagccagtaaacgtacacgatgttcaacttcac
tggccatcagagacgtgcaaattaaaaccacagtgagggtccaagttatc
aaggcaagacatctcactaaaataaataataaacaaaccaacaaataaac
agtaaattctcttgaggatatggactgaagggaactgttatgcactattg
aactaggttgcactccaactagaagcatcctcaccagcatttgttatgtg
aaaggtaaagaggtccagccactatgggactagtggtagtatgtgggaga
ggaccagcatgcaacattctgtcatcaaaacattgtgtatggacaactgc
tctctggaagactggtgagtctcgttgcctttttcatgagctcactatag
aactgacaagctgctctttcctcatcactaacttgtttctgtttgctgaa
ttggtatttgaattctctgttttcagtagattagcatttctccttttgca
ctaatttttaatcaaggaacatggctgcatgccaccatccaggcatgcca
gattcacactaaatctgctttctaagaagacattagtgaaaatttcctga
catctgctcaaaagctatctattttatattacatttattatagtgggagg
gtataagtatgaaatcagaacataaatttggggaattcattccttccctg
cattaggggagtcctgggtattaaactcaagtactcagacttggtggcca
gttcctttacccactaagctgttttccccagcccctaaaaattgtttgat
tttttttattagtattttcctcaattacatttccaatgctattccaaagt
ccccataccctacccacccattcccacttttggctggcgttccctgtaat
ggggcaataaagttgcatgtccatgggctctctttcagggaggccgacta
gacatctttgatactatgcagctagagtcaagaactccagtactgtagtc
tatagtgttacacctataggttgc
gaattctttatatattttggctatcagcccgctgtcagatgtaaggttgg
tgaagactttttccgcattctgtaggctgacattttgttcttctaatggt
gttctttgccttagagagtcttttcagtttcataaagtcccatttattaa
ttgttgatcttagtgccttagcttttggtgttctgttcagaaatttgtct
cctgtggtctaagcctgctgcatgctttggtttcgactttcatgtttctc
tgttgtaaatatagattgtgactctgacttcacttgtggtgctgagtcca
cggggaacagagctctgaggcccactcagcagacctctgtgtttagtatg
tgctctgaacatgcttccttctccaccctgtctattcagtgtttgccgag
atgctcagcgtgctacatgtagggtgagatgttccttaaacttacttgat
tgagatggatgtgtgaaagttagagtacaggtatgacttttttatgcatg
tgtgtaagaataagacagttgtggggagggttgtgtaagtcaagtaaata
tatacaaattaaacaagaaaacacctcgtttaataaaacctctgctattt
gtgatagatgcaatatttgaaactcgaaatatatacacaatttaagtaca
ctaaaatatagattggggtagtttcaatgagacgcaaacttttgcgaatg
ttagagaatgttacaacgataagaattttggtaagacaaaaggaaaatta
gtcagctgataggctggtgaacagatgcttagcaacttcacgttcgtcca
gttggtcaccaatcagctttgtctcgtccctttcttactgtatccttggt
gatgagcaagaagtgtgctgtgtcccctcgagccatggcctgtgggggag
tcactgccatcccatttgttctgggactttgggggtactagagtgcatga
ttgatttcccttgtatccacgtaccagtacataaatcctcacaagacggt
gaagagaatgggcatctctcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_56404945_56406042
seq2: B6Ng01-113G01.b_47_1120

seq1  GAATTCAAGCACCTCAATCAAAGAATATACTAAGGAAGCTGATAGTTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGCACCTCAATCAAAGAATATACTAAGGAAGCTGATAGTTCTC  50

seq1  AAGACCTGAGATATAAACAGCCAGTAAACGTACACGATGTTCAACTTCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCTGAGATATAAACAGCCAGTAAACGTACACGATGTTCAACTTCAC  100

seq1  TGGCCATCAGAGACGTGCAAATTAAAACCACAGTGAGGGTCCAAGTTATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCATCAGAGACGTGCAAATTAAAACCACAGTGAGGGTCCAAGTTATC  150

seq1  AAGGCAAGACATCTCACTAAAATAAATAATAAACAAACCAACAAATAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAAGACATCTCACTAAAATAAATAATAAACAAACCAACAAATAAAC  200

seq1  AGTAAATTCTCTTGAGGATATGGACTGAAGGGAACTGTTATGCACTATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAATTCTCTTGAGGATATGGACTGAAGGGAACTGTTATGCACTATTG  250

seq1  AACTAGGTTGCACTCCAACTAGAAGCATCCTCACCAGCATTTGTTATGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGGTTGCACTCCAACTAGAAGCATCCTCACCAGCATTTGTTATGTG  300

seq1  AAAGGTAAAGAGGTCCAGCCACTATGGGACTAGTGGTAGTATGTGGGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTAAAGAGGTCCAGCCACTATGGGACTAGTGGTAGTATGTGGGAGA  350

seq1  GGACCAGCATGCAACATTCTGTCATCAAAACATTGTGTATGGACAACTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCAGCATGCAACATTCTGTCATCAAAACATTGTGTATGGACAACTGC  400

seq1  TCTCTGGAAGACTGGTGAGTCTCGTTGCCTTTTTCATGAGCTCACTATAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGGAAGACTGGTGAGTCTCGTTGCCTTTTTCATGAGCTCACTATAG  450

seq1  AACTGACAAGCTGCTCTTTCCTCATCACTAACTTGTTTCTGTTTGCTGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGACAAGCTGCTCTTTCCTCATCACTAACTTGTTTCTGTTTGCTGAA  500

seq1  TTGGTATTTGAATTCTCTGTTTTCAGTAGATTAGCATTTCTCCTTTTGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTATTTGAATTCTCTGTTTTCAGTAGATTAGCATTTCTCCTTTTGCA  550

seq1  CTAATTTTTAATCAAGGAACATGGCTGCATGCCACCATCCAGGCATGCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTTTTAATCAAGGAACATGGCTGCATGCCACCATCCAGGCATGCCA  600

seq1  GATTCACACTAAATCTGCTTTCTAAGAAGACATTAGTGAAAATTTCCTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCACACTAAATCTGCTTTCTAAGAAGACATTAGTGAAAATTTCCTGA  650

seq1  CATCTGCTCAAAAGCTATCTATTTTATATTACATTTATTATAGTGGGAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGCTCAAAAGCTATCTATTTTATATTACATTTATTATAGTGGGAGG  700

seq1  GTATAAGTATGAAATCAGAACATAAATTTGGGGAATTCATTCCTTCCCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAAGTATGAAATCAGAACATAAATTTGGGGAATTCATTCCTTCCCTG  750

seq1  CATTAGGGGAGTCCTGGGTATTAAACTCAAGTACTCAGACTTGGTGGCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGGGGAGTCCTGGGTATTAAACTCAAGTACTCAGACTTGGTGGCCA  800

seq1  GTTCCTTTACCCACTAAGCTGTTTTCCCCAGCCCCTAAAAATTGTTTGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GTTCCTTTACCCACTAAGCTGTTTTCCCCAGCCCCTAAAAATTGTTTGA-  849

seq1  TTTTTTTTATTAGGTATTTTCCTCAATTACATTTCCAATGCTATTCCAAA  900
      |||||||||||| |||||||||||||||||||||||||||||||||| ||
seq2  TTTTTTTTATTA-GTATTTTCCTCAATTACATTTCCAATGCTATTCC-AA  897

seq1  AGTCCCCCATACCCTACCCACCCATTCCCACTTTTTGGCCTGGCGTTCCC  950
      ||| |||||||||||||||||||||||||||||||  | |||||||| ||
seq2  AGT-CCCCATACCCTACCCACCCATTCCCACTTTT--GGCTGGCGTT-CC  943

seq1  CTGTAATGGGGCATATAAAGTTTGCATGTCCAATGGGCCTCTCTTTCCAG  1000
      ||||||||||||| |||||| |||||||||| ||||| |||||||| |||
seq2  CTGTAATGGGGCA-ATAAAG-TTGCATGTCC-ATGGG-CTCTCTTT-CAG  988

seq1  TGATGGCCGACTAGGCCATCTTTTGATACATATGCAGCTAGAGTCAAGAA  1050
       || ||||||||| | |||| |||||||| ||||||||||||||||||||
seq2  GGA-GGCCGACTA-GACATC-TTTGATAC-TATGCAGCTAGAGTCAAGAA  1034

seq1  CTCCAGGGTACTGGTTAGTTCATATTGTTGTTCCACCTATAGGGTTGC  1098
      |||||  ||||||  ||||  |||    |||| |||||||| ||||||
seq2  CTCCA--GTACTG--TAGTCTATA---GTGTTACACCTATA-GGTTGC  1074

seq1: chr6_56534939_56535955
seq2: B6Ng01-113G01.g_67_1088 (reverse)

seq1  CTGAGATGATG-CCATTCTC-TCACCGTCTTGTAGAGATTTTATGTAACT  48
      |||||| |||| |||||||| |||||||||||| |||  ||||||| |||
seq2  CTGAGA-GATGCCCATTCTCTTCACCGTCTTGT-GAGGATTTATGT-ACT  47

seq1  GTAACGTGGATAC-AGGGAAATCAATCATGCACTCTAGTACCCCCAAAGT  97
      |  |||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GGTACGTGGATACAAGGGAAATCAATCATGCACTCTAGTACCCCCAAAGT  97

seq1  CCAAGAACAAATGGGATGGGCAGTGACT-CCCCACAGGCCATGGCTCGAG  146
      || |||||||||||||| |||||||||| |||||||||||||||||||||
seq2  CCCAGAACAAATGGGAT-GGCAGTGACTCCCCCACAGGCCATGGCTCGAG  146

seq1  GGGACACAGCACACTTCCTGCTCATCACC-AGGATACAGT-AGAAAGGGA  194
      ||||||||||||||||| ||||||||||| |||||||||| |||||||||
seq2  GGGACACAGCACACTTCTTGCTCATCACCAAGGATACAGTAAGAAAGGGA  196

seq1  CGAGAC-AAGCTGATTGGTGACCAACTGGACGAACGTGAAGTTGCTAAGC  243
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGACAAAGCTGATTGGTGACCAACTGGACGAACGTGAAGTTGCTAAGC  246

seq1  ATCTGTTCACCAGCCTATCAGCTGACTAATTTTCCTTTTGTCTTACC-AA  292
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ATCTGTTCACCAGCCTATCAGCTGACTAATTTTCCTTTTGTCTTACCAAA  296

seq1  ATTCTTATCGTTGTAACATTCTCTAACATTCGCAAAAGTTTGCGTCTCAT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTATCGTTGTAACATTCTCTAACATTCGCAAAAGTTTGCGTCTCAT  346

seq1  TGAAACTA-CCCAATCTATATTTTAGTGTACTTAAATTGTGTATATATTT  391
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACTACCCCAATCTATATTTTAGTGTACTTAAATTGTGTATATATTT  396

seq1  CGAGTTTCAAATATTGCATCTATCACAAATAGCAGAGGTTTTATTAAACG  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGTTTCAAATATTGCATCTATCACAAATAGCAGAGGTTTTATTAAACG  446

seq1  AGGTGTTTTCTTGTTTAATTTGTATATATTTACTTGACTTACACAACCCT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTTTTCTTGTTTAATTTGTATATATTTACTTGACTTACACAACCCT  496

seq1  CCCCACAACTGTCTTATTCTTACACACATGCATAAAAAAGTCATACCTGT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACAACTGTCTTATTCTTACACACATGCATAAAAAAGTCATACCTGT  546

seq1  ACTCTAACTTTCACACATCCATCTCAATCAAGTAAGTTTAAGGAACATCT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTAACTTTCACACATCCATCTCAATCAAGTAAGTTTAAGGAACATCT  596

seq1  CACCCTACATGTAGCACGCTGAGCATCTCGGCAAACACTGAATAGACAGG  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTACATGTAGCACGCTGAGCATCTCGGCAAACACTGAATAGACAGG  646

seq1  GTGGAGAAGGAAGCATGTTCAGAGCACATACTAAACACAGAGGTCTGCTG  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGAAGGAAGCATGTTCAGAGCACATACTAAACACAGAGGTCTGCTG  696

seq1  AGTGGGCCTCAGAGCTCTGTTCCCCGTGGACTCAGCACCACAAGTGAAGT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGCCTCAGAGCTCTGTTCCCCGTGGACTCAGCACCACAAGTGAAGT  746

seq1  CAGAGTCACAATCTATATTTACAACAGAGAAACATGAAAGTCGAAACCAA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTCACAATCTATATTTACAACAGAGAAACATGAAAGTCGAAACCAA  796

seq1  AGCATGCAGCAGGCTTAGACCACAGGAGACAAATTTCTGAACAGAACACC  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGCAGCAGGCTTAGACCACAGGAGACAAATTTCTGAACAGAACACC  846

seq1  AAAAGCTAAGGCACTAAGATCAACAATTAATAAATGGGACTTTATGAAAC  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCTAAGGCACTAAGATCAACAATTAATAAATGGGACTTTATGAAAC  896

seq1  TGAAAAGACTCTCTAAGGCAAAGAACACCATTAGAAGAACAAAATGTCAG  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAGACTCTCTAAGGCAAAGAACACCATTAGAAGAACAAAATGTCAG  946

seq1  CCTACAGAATGCGGAAAAAGTCTTCACCAACCTTACATCTGACAGCGGGC  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACAGAATGCGGAAAAAGTCTTCACCAACCTTACATCTGACAGCGGGC  996

seq1  TGATAGCCAAAATATATAAAGAATTC  1017
      ||||||||||||||||||||||||||
seq2  TGATAGCCAAAATATATAAAGAATTC  1022