BAC Information

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BAC

Clone NameB6Ng01-113G13
Chromosome7 (Build37)6 (Build37)
Map Location 117,195,371 - 117,195,968128,190,633 - 128,190,797
singlet/doubletsingletsinglet
Overlap geneIpo7
Upstream geneRic3, Lmo1, Stk33, EG668320, 1700095J03Rik, Trim66, Rpl27a, St5, LOC100042582, D930014E17Rik, BC051019, Ascl3, Tmem9b, 4930431P19Rik, Nrip3, Scube2, Phxr5, Rab6ip1, Tmem41b
Downstream geneAA474408, Zfp143, Wee1, Swap70, EG668368, Sbf2, LOC668246, Adm, B430319F04Rik, Ampd3, Rnf141, Xlkd1, Mrvi1, Ctr9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-113G13.bB6Ng01-113G13.g
ACCDH919212DH919213
length598320
definitionDH919212|Mus musculus domesticus DNA, BAC clone: B6Ng01-113G13, 5' end.DH919213|Mus musculus domesticus DNA, BAC clone: B6Ng01-113G13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(117,195,371 - 117,195,968)(128,190,633 - 128,190,797)
sequence
gaattccaggccagcctggtctacagaatgagttctgggaccacctaggc
tacataaaaaggagtttcagaaaaagccaatgtagtggcacacacattta
ttacaggagtatgggcttcaaatggaaaacagaaaattagaaagacaatt
gggttatatctcaggttgctatagtgttcctgtagcattcacagagcctg
aatttcatcccagcatccacaactgcactctgtaggtagaggcaggaaga
tctatgctctatgctggcctgtacaggcagtggacatttatggtgcactt
atacataccaaactacaatgaagggaatgggatagtgtacggaatatttt
gcttgtaatagaatgtacagtagcaatgtaaattgattgaatttgataac
aataattgttctcaccaaatatatacctcgcaacttgttctcttttctct
ctgggtttttggtttttcgagacagggtttctctgtatagccctggctgt
cctggaactcactctgtagaccaggctggcctcgaactcagaaatccgcc
tgcctctgcctcccaagtgctgggattaaaggtgtgcgccaccaccac
caggacatccagggctacacaaagaaaccctctttcaggagaaaaaaaaa
aagataaacaaaacatggtttccatctacagtctgagcacctgaaaggga
gagacaggaagatggctgtaagtttaaagcctacctaatctactacacag
caagttctagcccattgagagatatacagaaagattctgtctgaaaaata
aaatatatacattataaatggaagtatagctcagtgataaagagcttgct
tagaatgtagtaagccctgggctcaattttcagtactacaaaagtaggag
cagtgtgtgtgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_117195371_117195968
seq2: B6Ng01-113G13.b_46_643

seq1  GAATTCCAGGCCAGCCTGGTCTACAGAATGAGTTCTGGGACCACCTAGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGCCAGCCTGGTCTACAGAATGAGTTCTGGGACCACCTAGGC  50

seq1  TACATAAAAAGGAGTTTCAGAAAAAGCCAATGTAGTGGCACACACATTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAAAAAGGAGTTTCAGAAAAAGCCAATGTAGTGGCACACACATTTA  100

seq1  TTACAGGAGTATGGGCTTCAAATGGAAAACAGAAAATTAGAAAGACAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGGAGTATGGGCTTCAAATGGAAAACAGAAAATTAGAAAGACAATT  150

seq1  GGGTTATATCTCAGGTTGCTATAGTGTTCCTGTAGCATTCACAGAGCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTATATCTCAGGTTGCTATAGTGTTCCTGTAGCATTCACAGAGCCTG  200

seq1  AATTTCATCCCAGCATCCACAACTGCACTCTGTAGGTAGAGGCAGGAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCATCCCAGCATCCACAACTGCACTCTGTAGGTAGAGGCAGGAAGA  250

seq1  TCTATGCTCTATGCTGGCCTGTACAGGCAGTGGACATTTATGGTGCACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGCTCTATGCTGGCCTGTACAGGCAGTGGACATTTATGGTGCACTT  300

seq1  ATACATACCAAACTACAATGAAGGGAATGGGATAGTGTACGGAATATTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATACCAAACTACAATGAAGGGAATGGGATAGTGTACGGAATATTTT  350

seq1  GCTTGTAATAGAATGTACAGTAGCAATGTAAATTGATTGAATTTGATAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTAATAGAATGTACAGTAGCAATGTAAATTGATTGAATTTGATAAC  400

seq1  AATAATTGTTCTCACCAAATATATACCTCGCAACTTGTTCTCTTTTCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTGTTCTCACCAAATATATACCTCGCAACTTGTTCTCTTTTCTCT  450

seq1  CTGGGTTTTTGGTTTTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTTTTTGGTTTTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCTGT  500

seq1  CCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCC  550

seq1  TGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGTGTGCGCCACCACCAC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGTGTGCGCCACCACCAC  598

seq1: chr6_128190633_128190797
seq2: B6Ng01-113G13.g_75_394 (reverse)

seq1  --------------------------------------------------  0
                                                        
seq2  ACACACACACACACACACTGCTCCTACTTTTGTAGTACTGAAAATTGAGC  50

seq1  --------------------------------------------------  0
                                                        
seq2  CCAGGGCTTACTACATTCTAAGCAAGCTCTTTATCACTGAGCTATACTTC  100

seq1  ------------------------ACACACACACACACACACTGCATATT  26
                                 || ||| |  |   ||| |||| 
seq2  CATTTATAATGTATATATTTTATTTTTCAGACAGAATCTTTCTGTATATC  150

seq1  TCTCA----------------TCCATATTA-ATTAAGCCCTAGAATTTAA  59
      |||||                |   || || |||| |   |||  |||||
seq2  TCTCAATGGGCTAGAACTTGCTGTGTAGTAGATTAGG---TAGGCTTTAA  197

seq1  ATTAAGGACCATCTAGAACCATCACC---TTAGCTGCTC------TATTT  100
      | | |   ||||||       || ||   | || |||||      ||  |
seq2  ACTTACAGCCATCTTCCTGTCTCTCCCTTTCAGGTGCTCAGACTGTAGAT  247

seq1  -------TTTTCTTCTTCCTTTTTTTTTTTTTTTTCT-AGACAGGGTTTC  142
              | | || ||  | ||||||||||| | || | | ||||||||
seq2  GGAAACCATGTTTTGTTTATCTTTTTTTTTTTCTCCTGAAAGAGGGTTTC  297

seq1  TCTGTGTAGCCCTGGTTGTCCTG  165
      | ||||||||||||| |||||||
seq2  TTTGTGTAGCCCTGGATGTCCTG  320